BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0420.0012.p
         (63 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_833883.1| hypothetical protein [Bacillus cereus ATCC 1457...    69   2e-11
dbj|BAC81194.1| Homolog of unknown protein YycC [Brevibacillus c...    65   7e-10
ref|NP_391927.1| yycC [Bacillus subtilis] >gi|2636594|emb|CAB160...    59   4e-08
sp|P37481|YYCC_BACSU Hypothetical protein yycC >gi|2126984|pir||...    57   1e-07

>ref|NP_833883.1| hypothetical protein [Bacillus cereus ATCC 14579]
 ref|NP_846622.1| conserved hypothetical protein [Bacillus anthracis str. Ames]
 ref|NP_980535.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
 gb|AAP11084.1| hypothetical protein [Bacillus cereus ATCC 14579]
 gb|AAP28108.1| conserved hypothetical protein [Bacillus anthracis str. Ames]
 gb|AAS43143.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
 gb|EAH03044.1| unknown [environmental sequence]
          Length = 48

 Score = 69.3 bits (168), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/47 (72%), Positives = 42/47 (89%), Gaps = 1/47 (2%)

Query: 1  MKPLQISPETAVTLAKQLGVPLEHLMHMPQHILLQKIAELSKKQSQD 47
          M+PLQISP+TAV L+K LGVPLE LMHMPQHIL+QK+ EL +KQ++D
Sbjct: 1  MRPLQISPDTAVRLSKALGVPLEQLMHMPQHILIQKLVEL-EKQNKD 46


>dbj|BAC81194.1| Homolog of unknown protein YycC [Brevibacillus choshinensis]
          Length = 83

 Score = 64.7 bits (156), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 30/41 (73%), Positives = 37/41 (90%)

Query: 1  MKPLQISPETAVTLAKQLGVPLEHLMHMPQHILLQKIAELS 41
          ++PLQISPETAV LA++L VPLE LMHMPQHIL+QK+ EL+
Sbjct: 33 VRPLQISPETAVKLAEKLNVPLEQLMHMPQHILMQKMMELA 73


>ref|NP_391927.1| yycC [Bacillus subtilis]
 emb|CAB16084.1| yycC [Bacillus subtilis subsp. subtilis str. 168]
          Length = 46

 Score = 58.9 bits (141), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/43 (67%), Positives = 35/43 (81%)

Query: 1  MKPLQISPETAVTLAKQLGVPLEHLMHMPQHILLQKIAELSKK 43
          M+PLQIS ETA  LA+ L +PLE +MHMPQHILL K+AEL K+
Sbjct: 1  MRPLQISAETAQKLAESLNLPLEQIMHMPQHILLAKMAELQKE 43


>sp|P37481|YYCC_BACSU Hypothetical protein yycC
 pir||S65972 yycC protein - Bacillus subtilis
 dbj|BAA05178.1| unknown [Bacillus subtilis]
          Length = 88

 Score = 57.4 bits (137), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/43 (65%), Positives = 35/43 (81%)

Query: 1  MKPLQISPETAVTLAKQLGVPLEHLMHMPQHILLQKIAELSKK 43
          ++PLQIS ETA  LA+ L +PLE +MHMPQHILL K+AEL K+
Sbjct: 43 VRPLQISAETAQKLAESLNLPLEQIMHMPQHILLAKMAELQKE 85


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.306    0.121    0.318 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 80,722,368
Number of extensions: 2094841
Number of successful extensions: 5996
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5996
Number of HSP's successfully gapped: 4
Length of query: 63
Length of database: 757,237,578
Length adjustment: 35
Effective length of query: 28
Effective length of database: 662,209,113
Effective search space: 18541855164
Effective search space used: 18541855164
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 120 (50.8 bits)