BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0420.0004.p (332 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_471134.1| similar to hypothetical proteins [Listeria inno... 238 2e-61 ref|NP_388742.1| yfhP [Bacillus subtilis] >gi|7475004|pir||H6980... 237 3e-61 ref|NP_241795.1| BH0929~unknown conserved protein in B. subtilis... 236 4e-61 ref|NP_465215.1| similar to hypothetical proteins [Listeria mono... 230 3e-59 ref|NP_691816.1| hypothetical protein OB0895 [Oceanobacillus ihe... 213 7e-54 >ref|NP_471134.1| similar to hypothetical proteins [Listeria innocua] pir||AE1657 hypothetical protein homolog lin1798 [imported] - Listeria innocua (strain Clip11262) emb|CAC97029.1| lin1798 [Listeria innocua] Length = 326 Score = 238 bits (607), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 136/329 (41%), Positives = 186/329 (56%), Gaps = 10/329 (3%) Query: 1 MDTATHFVMGLGLAGLSFVDPVVASQPTLAGAVMVATVLASQAPDADTALRLKDNALYIR 60 MDT TH VMG+ L L+ VDPVVA A +M AT++ SQ PD DT L+LK+NA YIR Sbjct: 1 MDTGTHVVMGIALGALATVDPVVAGSSQAAIGIMTATIIGSQIPDIDTVLKLKNNADYIR 60 Query: 61 NHRGITHSLPFLLLWPALITLVIGPVFGFTELHDLSHIALWSFIGVAVHVFTDLFNTYGT 120 NHRGITHSLP L +WP LI+ ++ +F H+ LW+FI V +H+F D+FN YGT Sbjct: 61 NHRGITHSLPMLAIWPLLISSILYLIF---PAATFIHLLLWTFIAVGLHIFVDIFNAYGT 117 Query: 121 QAARPFTEKWIAWNIIHIFDPFIFGSHVAAIILWISGFVPPAPLFITLYACIALYYIWRT 180 QA RPF E W+A+ I+ FD FIFGSHV AI +W+ G P P F+TLY +ALYY+ R Sbjct: 118 QAIRPFKETWVAFGFINTFDWFIFGSHVVAIAVWLLG-SPAVPTFVTLYIILALYYVAR- 175 Query: 181 LVHARLTRKLKTKDIHHSPGERYFVIPTISPARWNVVKAKPDGSYIIGLL--NSGRLEWF 238 V R+ + I S E + TI +W V D Y+ N E F Sbjct: 176 FVTQRMIKHAVQNLIPDS--EEIIIASTIHFFQWRVAVTTKDHYYVGRAFKRNISIYEKF 233 Query: 239 KHAVCSTHPAVEHSKSHPDIKAFLYFTSYAVAEVEELPSGYIVRWGDVRYLHRKQFPFVA 298 + + +K ++ AF+ F+ +EE G V + D+RY +PFVA Sbjct: 234 DRLPVPDNEIIRSAKKDKNLAAFISFSKVYNWRIEEKLDGTYVTFTDLRYRSNGHYPFVA 293 Query: 299 VLVMDSQYHPLNTYVGWL-SSEKLDERFA 326 V+ +D +++Y GW+ S+EKL ++ A Sbjct: 294 VVKLDDDLKIISSYTGWIFSTEKLYKKLA 322 >ref|NP_388742.1| yfhP [Bacillus subtilis] pir||H69801 hypothetical protein yfhP - Bacillus subtilis emb|CAB12690.1| yfhP [Bacillus subtilis subsp. subtilis str. 168] dbj|BAA24482.1| YfhP [Bacillus subtilis] Length = 327 Score = 237 bits (604), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 131/331 (39%), Positives = 193/331 (58%), Gaps = 11/331 (3%) Query: 1 MDTATHFVMGLGLAGLSFVDPVVASQPTLAGAVMVATVLASQAPDADTALRLKDNALYIR 60 MDT TH VMG+ L G++ +DPVV S P +A AVM+AT+ SQAPD DT L+LK+NA+YIR Sbjct: 1 MDTGTHVVMGIALGGIATLDPVVGSDPAMAHAVMIATLAGSQAPDIDTVLKLKNNAVYIR 60 Query: 61 NHRGITHSLPFLLLWPALITLVIGPVFGFTELHDLSHIALWSFIGVAVHVFTDLFNTYGT 120 NHRG THS+P +L W +I ++ + F D H+ LW+ + V +HVF D+FN YGT Sbjct: 61 NHRGFTHSIPAVLFWSVIIPAIL---YLFYPQADFLHLWLWTLLAVVLHVFVDIFNAYGT 117 Query: 121 QAARPFTEKWIAWNIIHIFDPFIFGSHVAAIILWISGFVPPAPLFITLYACIALYYIWRT 180 QA RPF++KW+A +I+ FDPFIF SH+AAI +W +G P F++LY + YY+ R Sbjct: 118 QAIRPFSKKWVALGLINTFDPFIFISHLAAIAIWYAGG-SPGITFLSLYIILVGYYLVRL 176 Query: 181 LVHARLTRKLKTKDIHHSPGERYFVIPTISPARWNVVKAKPDGSYIIGLLNSGR---LEW 237 ++ R+ RKL ++ H E + PT+ +W + Y +G G L+ Sbjct: 177 IMQLRIKRKL--HEMIHDEIESIIISPTMKFRQWRIAVTTAHAFY-VGRSMEGHVVILDT 233 Query: 238 FKHAVCSTHPAVEHSKSHPDIKAFLYFTSYAVAEVEELPSGYIVRWGDVRYLHRKQFPFV 297 F + +K +I AFL F+ EV+ Y VR+ D+RY + +PFV Sbjct: 234 FNRVPVPETDVMHAAKQDDNIAAFLSFSPVYRWEVDTFKDHYEVRFIDLRYRSKGHYPFV 293 Query: 298 AVLVMDSQYHPLNTYVGWL-SSEKLDERFAI 327 A++ + ++Y GW+ S EKL ++ + Sbjct: 294 AIVHIGHDLTIRSSYTGWIFSEEKLQKKLKL 324 >ref|NP_241795.1| BH0929~unknown conserved protein in B. subtilis [Bacillus halodurans] pir||A83766 hypothetical protein BH0929 [imported] - Bacillus halodurans (strain C-125) dbj|BAB04648.1| BH0929~unknown conserved protein in B. subtilis [Bacillus halodurans] Length = 327 Score = 236 bits (603), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 131/329 (39%), Positives = 190/329 (57%), Gaps = 14/329 (4%) Query: 1 MDTATHFVMGLGLAGLSFVDPVVASQPTLAGAVMVATVLASQAPDADTALRLKDNALYIR 60 MDT TH VMG+ L GL+ +DP V + P + VM+AT++ SQAPD DT L+L++NA+YIR Sbjct: 1 MDTGTHVVMGVALGGLAAIDPAVTNDPMMKSTVMIATIIGSQAPDFDTILKLRNNAVYIR 60 Query: 61 NHRGITHSLPFLLLWPALITLVIGPVFGFTELHDLSHIALWSFIGVAVHVFTDLFNTYGT 120 NHRG+THSLP L +WP L+ I +F + L LWSFI V +HVF D+FN YGT Sbjct: 61 NHRGLTHSLPALFIWPFLVAGGIWLLFPESAFFTL---WLWSFIAVFLHVFVDIFNAYGT 117 Query: 121 QAARPFTEKWIAWNIIHIFDPFIFGSHVAAIILWISGFVPPAPLFITLYACIALYYIWRT 180 QA RP +++WIA +I+IFDPFIF +HV AI W G P P F+ LY + YY+WR Sbjct: 118 QALRPISDRWIALGVINIFDPFIFFAHVVAIFCWYLG-TNPIPTFLLLYFVLTCYYVWRL 176 Query: 181 LVHARLTRKLKTKDIHHSPGERYFVIPTISPARWNVVKAKPDGSYIIGLLNSGR----LE 236 + + K + H+ FV PT+ +W+VV + Y+ + GR E Sbjct: 177 KLKHEIVLKARN---HYPEATHVFVSPTLHWNKWHVVIRTKEMLYVARV--KGRSFTFYE 231 Query: 237 WFKHAVCSTHPAVEHSKSHPDIKAFLYFTSYAVAEVEELPSGYI-VRWGDVRYLHRKQFP 295 + P + +++ ++ AFL F+ E+ EL VR+ D+RY + +P Sbjct: 232 QYPFEPIPDIPVLNAARNDKNLAAFLSFSPTYRWEINELEEDVTEVRFYDLRYRSKGHYP 291 Query: 296 FVAVLVMDSQYHPLNTYVGWLSSEKLDER 324 FVA + +D + + +Y GW+ SEK ++ Sbjct: 292 FVACVQLDQDLNVIRSYTGWVFSEKTLQK 320 >ref|NP_465215.1| similar to hypothetical proteins [Listeria monocytogenes EGD-e] pir||AB1286 hypothetical proteins homolog lmo1690 [imported] - Listeria monocytogenes (strain EGD-e) emb|CAC99768.1| lmo1690 [Listeria monocytogenes] Length = 326 Score = 230 bits (587), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 136/329 (41%), Positives = 185/329 (56%), Gaps = 10/329 (3%) Query: 1 MDTATHFVMGLGLAGLSFVDPVVASQPTLAGAVMVATVLASQAPDADTALRLKDNALYIR 60 MDT TH VMG+ L L+ VDPVVA A +M AT++ SQ PD DT L+LK+NA YIR Sbjct: 1 MDTGTHVVMGIALGALATVDPVVAGSSQAAIGIMTATIIGSQIPDIDTVLKLKNNADYIR 60 Query: 61 NHRGITHSLPFLLLWPALITLVIGPVFGFTELHDLSHIALWSFIGVAVHVFTDLFNTYGT 120 NHRGITHSLP L +WP LI+ ++ +F H+ LW+FI V +H+F D+FN YGT Sbjct: 61 NHRGITHSLPMLAIWPLLISSILYLLF---PAATFIHLLLWTFIAVGLHIFVDIFNAYGT 117 Query: 121 QAARPFTEKWIAWNIIHIFDPFIFGSHVAAIILWISGFVPPAPLFITLYACIALYYIWRT 180 QA RPF E W+A+ I+ FD FIFGSHV AI W+ G P P F+TLY +ALYY+ R Sbjct: 118 QAVRPFKETWVAFGFINTFDWFIFGSHVVAIAAWLLG-SPVLPTFVTLYVILALYYVAR- 175 Query: 181 LVHARLTRKLKTKDIHHSPGERYFVIPTISPARWNVVKAKPDGSYIIGLL--NSGRLEWF 238 V R+ + I S E + TI +W V D Y+ N E F Sbjct: 176 FVTQRMIKHAVQNLIPDS--EEIIIASTIHFFQWRVAVTTKDHYYVGRAFKRNISIYEKF 233 Query: 239 KHAVCSTHPAVEHSKSHPDIKAFLYFTSYAVAEVEELPSGYIVRWGDVRYLHRKQFPFVA 298 + + +K ++ AF+ F+ +EE G V + D+RY +PFVA Sbjct: 234 DRLPVPDNEIIRSAKKDKNLAAFISFSKVYNWRIEEKLDGTYVTFTDLRYRSNGHYPFVA 293 Query: 299 VLVMDSQYHPLNTYVGWL-SSEKLDERFA 326 V+ +D +++Y GW+ S+EKL ++ A Sbjct: 294 VVKLDDDLKIVSSYTGWIFSTEKLYKKLA 322 >ref|NP_691816.1| hypothetical protein OB0895 [Oceanobacillus iheyensis HTE831] dbj|BAC12851.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 329 Score = 213 bits (541), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 127/326 (38%), Positives = 184/326 (56%), Gaps = 16/326 (4%) Query: 1 MDTATHFVMGLGLAGLSFVDPVVASQPTLAGAVMVATVLASQAPDADTALRLKDNALYIR 60 MDT TH VMG+ L GL+ +DPVV S PTL AV+V TV+ S APD DT +LK+NA YIR Sbjct: 1 MDTGTHIVMGVALGGLATIDPVVQSDPTLFHAVLVGTVVGSHAPDFDTVFKLKNNATYIR 60 Query: 61 NHRGITHSLPFLLLWPALITLVIGPVFGFTELHDLSHIALWSFIGVAVHVFTDLFNTYGT 120 +HRG +HSLP +++W L++ G ++ F H+ LW+ + V +HVF DLFN YGT Sbjct: 61 HHRGASHSLPAIVIWSFLVS---GLIYLFVPEVSYLHLWLWTLLAVVIHVFVDLFNAYGT 117 Query: 121 QAARPFTEKWIAWNIIHIFDPFIFGSHVAAIILWISGFVPPAPLFITLYACIALYYIWRT 180 QA RPF++KWIA I+ FDP+IF +VA I W G P ++ +Y+ I LYYI R Sbjct: 118 QAFRPFSKKWIAKGFINTFDPYIFFLNVAGIAAWALG-ANPGITWVIIYSVIVLYYIKRF 176 Query: 181 LVHARLTRKLKTKDIHHSPGERYFVI--PTISPARWNVVKAKPDGSYIIGLLNSGRLEWF 238 + + +K IH E V+ PTI W V P+ Y +G + + +E Sbjct: 177 MDKREIVKK-----IHEYYPETVSVVTSPTIKQNYWRVAITTPERFY-VGRVENRHIEII 230 Query: 239 KHAVCSTHPA---VEHSKSHPDIKAFLYFTSYAVAEVEELPSGYI-VRWGDVRYLHRKQF 294 + P + + +I++FL F+ E E G VR+ D+RY + + Sbjct: 231 DEFLRVPLPESDIMNIAIQDKNIQSFLNFSPIYRWETYEQEEGTTEVRFIDLRYRSKDYY 290 Query: 295 PFVAVLVMDSQYHPLNTYVGWLSSEK 320 PFVAV+ +++ + +Y GW+ SE+ Sbjct: 291 PFVAVVQINANLEIVTSYTGWIFSER 316 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.326 0.140 0.454 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 533,006,477 Number of extensions: 22339206 Number of successful extensions: 65243 Number of sequences better than 1.0e-05: 41 Number of HSP's gapped: 65191 Number of HSP's successfully gapped: 41 Length of query: 332 Length of database: 757,237,578 Length adjustment: 126 Effective length of query: 206 Effective length of database: 415,135,104 Effective search space: 85517831424 Effective search space used: 85517831424 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 126 (53.1 bits)