BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0420.0001.p (206 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value pir||T18205 mnxC protein - Bacillus sp >gi|942619|gb|AAB06485.1|... 124 1e-27 gb|EAK57890.1| unknown [environmental sequence] 99 6e-20 gb|EAC77507.1| unknown [environmental sequence] 98 1e-19 gb|EAF82073.1| unknown [environmental sequence] 90 3e-17 gb|EAK56729.1| unknown [environmental sequence] 89 5e-17 >pir||T18205 mnxC protein - Bacillus sp gb|AAB06485.1| MnxC Length = 195 Score = 124 bits (311), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 62/154 (40%), Positives = 93/154 (60%), Gaps = 5/154 (3%) Query: 33 NDKLPVIGEVQDFSLENVDGRPITLADTEGKPRLVYFFFTECPDVCPITTFMLSQTQDLL 92 ++LP++G V++ +LE+VDG L D K +LV FF+T CPD+CP+T F L Q + L Sbjct: 25 QERLPLLGSVENAALESVDGSTFQLHDQ--KIKLVVFFYTHCPDICPMTLFDLEQVKKEL 82 Query: 93 KKDGSFGKDVEFVSISFDPLNDTREAIKAFADRFHADYSGWYFLRGDQEQVRTLAADSFK 152 + F + V F+SI+ DP DT+E ++ +A F D++GW LRGD +A D FK Sbjct: 83 ETKNLFKEKVRFISITLDPEVDTQERLQEYAQNFSVDHAGWMMLRGDTSTTEQIAKD-FK 141 Query: 153 VLIYGDNKDNFA-HANLIGLVDRNNRLRGLYDAG 185 +IY N+ F H+ + LVD NN++R +D Sbjct: 142 -MIYQKNESGFVTHSTTMYLVDANNKIRAYHDMA 174 >gb|EAK57890.1| unknown [environmental sequence] Length = 171 Score = 99.0 bits (245), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 61/165 (36%), Positives = 88/165 (53%), Gaps = 12/165 (7%) Query: 31 KGNDKLPVIGEVQDFSLENVDGRPITLADTEGKPRLVYFFFTECPDVCPITTFMLSQTQ- 89 K ++LP+IG++ F L + +G TL +G L F FT C CPI T +S Q Sbjct: 4 KEENELPIIGKIPSFDLIDQNGESFTLESVKGNVWLADFIFTTCAGPCPIMTERMSTVQH 63 Query: 90 DLLKKDGSFGKDVEFVSISFDPLNDTREAIKAFADRFHADYSGWYFLRGDQEQVRTLAAD 149 DL+ D ++FVS + +P DT E +K +A R+ AD S W F+ G EQ++ L A+ Sbjct: 64 DLIDID-----KLKFVSFTVNPDYDTPEVLKKYAKRYDADISTWSFVTGKYEQIQELIAN 118 Query: 150 SFKVLIYGDNKDNFAHANLIGLVDRNNRLRGLY---DAGDTENVT 191 FK+ GD ++ H+ LVD LRG Y + D EN+T Sbjct: 119 GFKM---GDEEEIVFHSTRFALVDHEGNLRGYYSGTEPMDHENLT 160 >gb|EAC77507.1| unknown [environmental sequence] Length = 164 Score = 98.2 bits (243), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 61/170 (35%), Positives = 88/170 (51%), Gaps = 9/170 (5%) Query: 36 LPVIGEVQDFSLENVDGRPITLADTEGKPRLVYFFFTECPDVCPITTFMLSQTQDLLKKD 95 + V+ EVQ F L + DG+P + EGK +V FFFT+C +CP LS+ +L+K Sbjct: 1 MEVLSEVQPFELVDQDGQPFSSEKLEGKVCVVNFFFTQCEGLCP----QLSEEMTILQKR 56 Query: 96 GSFGKDVEFVSISFDPLNDTREAIKAFADRFHADYSGWYFLRGDQEQVRTLAADSFKVLI 155 + D VSIS DP NDT E + AF + + D S W L GDQE + L D F V Sbjct: 57 FARSLDFHLVSISADPKNDTPENVSAFIAKHNIDTSNWTLLTGDQETILRLMKDDFLVST 116 Query: 156 YGDNKDNFAHANLIGLVDRNNRLRGLYDAGDTENVTPEFLAGALKKLARE 205 D + H++ L+DR ++R Y D+ + E L +++L E Sbjct: 117 VVDPR---LHSDRFLLLDRELKMRASYSMSDSSAM--ERLPRGVRRLIVE 161 >gb|EAF82073.1| unknown [environmental sequence] Length = 174 Score = 90.1 bits (222), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 50/163 (30%), Positives = 87/163 (53%), Gaps = 4/163 (2%) Query: 29 WNKGNDKLPVIGEVQDFSLENVDGRPITLADTEGKPRLVYFFFTECPDVCPITTFMLSQT 88 +NK D+ + ++ +S N +G I+ D + K LV FFFT CP +CP+ T + + Sbjct: 9 FNKEIDEDTLFHKIPYWSFLNQNGENISSKDYKNKISLVDFFFTNCPTICPLMTVNMKKI 68 Query: 89 QDLLKKDGSFGKDVEFVSISFDPLNDTREAIKAFADRFHADYSGWYFLRGDQEQVRTLAA 148 Q+ ++K+ ++VE +S + DP D+ + + +++ ++ D S W L G+Q + L Sbjct: 69 QNAIQKECL--ENVELISFTVDPSRDSVKRLNEYSNSYNIDASNWNMLTGNQSAIYELGI 126 Query: 149 DSFKVLIYGD--NKDNFAHANLIGLVDRNNRLRGLYDAGDTEN 189 F V D F H+ + L+D+N R+RG YD D+ N Sbjct: 127 KGFLVPNQEDALAPGGFLHSEKMILIDKNQRIRGYYDGTDSLN 169 >gb|EAK56729.1| unknown [environmental sequence] Length = 215 Score = 89.4 bits (220), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 55/152 (36%), Positives = 79/152 (51%), Gaps = 9/152 (5%) Query: 42 VQDFSLENVDGRPITLADTEGKPRLVYFFFTECPDVCPITTFMLSQTQDLLKKDGSFGKD 101 + DFSL N +G +T D + K + FFFT CPD+CPI T + Q+ LK + Sbjct: 53 ISDFSLLNQNGNNVTQEDYKNKIYVADFFFTTCPDICPIMTGNMLYLQENLK-----DTN 107 Query: 102 VEFVSISFDPLNDTREAIKAFADRFHADYSGWYFLRGDQEQVRTLAADSF---KVLIYGD 158 V S S P DT E +K ++ D S W + GD++Q+ LA S+ K + YG Sbjct: 108 VMLASFSVTPKIDTVEVLKEYSTLKGVDDSRWNLMTGDKKQIYHLARKSYLVAKAIPYGK 167 Query: 159 NKDNFAHANLIGLVDRNNRLRGLYDAGDTENV 190 N N + LVDR+ R+RG YD + E++ Sbjct: 168 NHGMIHTENFV-LVDRDKRIRGYYDGTNIEDM 198 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.320 0.139 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 295,559,576 Number of extensions: 12160379 Number of successful extensions: 25770 Number of sequences better than 1.0e-05: 307 Number of HSP's gapped: 25607 Number of HSP's successfully gapped: 307 Length of query: 206 Length of database: 757,237,578 Length adjustment: 120 Effective length of query: 86 Effective length of database: 431,425,698 Effective search space: 37102610028 Effective search space used: 37102610028 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 123 (52.0 bits)