BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0417.0021.p
         (115 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_390573.1| similar to spore coat protein [Bacillus subtili...   191   4e-48
ref|NP_347251.1| Spore coat protein F [Clostridium acetobutylicu...    86   2e-16
ref|NP_241609.1| spore coat protein [Bacillus halodurans] >gi|25...    73   2e-12
ref|NP_390576.1| similar to spore coat protein [Bacillus subtili...    72   4e-12

>ref|NP_390573.1| similar to spore coat protein [Bacillus subtilis]
 pir||F69970 spore coat protein homolog yraF - Bacillus subtilis
 gb|AAB80875.1| hypothetical spore coat protein [Bacillus subtilis]
 emb|CAA63473.1| spore coat protein F [Bacillus subtilis]
 emb|CAB14637.1| yraF [Bacillus subtilis subsp. subtilis str. 168]
          Length = 122

 Score =  191 bits (485), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 87/109 (79%), Positives = 99/109 (90%)

Query: 1   MPEMADMTFATDFLLRAKEGVRNLSIALTETASPDVRALLHNHLKQGIAMHQEITELMMR 60
           +PE+AD TFA DFL+RAKEGVRN ++ALTETASPDVRALL   L QGIAMHQEITELM+ 
Sbjct: 14  VPELADTTFAMDFLIRAKEGVRNTAVALTETASPDVRALLRKQLMQGIAMHQEITELMIS 73

Query: 61  KKWFHPYELNEQYQLDQLSAKNTVMIGQMNLFPDDTSRKGMFDRTPDGH 109
           KKWFHPYEL+EQY+LDQLSAKNT+M+G MNLFPD+T+RKGMFDRTPD H
Sbjct: 74  KKWFHPYELSEQYKLDQLSAKNTIMVGNMNLFPDETNRKGMFDRTPDEH 122


>ref|NP_347251.1| Spore coat protein F [Clostridium acetobutylicum]
 pir||D96975 spore coat protein F [imported] - Clostridium acetobutylicum
 gb|AAK78591.1| Spore coat protein F [Clostridium acetobutylicum]
          Length = 98

 Score = 85.9 bits (211), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 57/88 (64%)

Query: 1  MPEMADMTFATDFLLRAKEGVRNLSIALTETASPDVRALLHNHLKQGIAMHQEITELMMR 60
          M  + D   ATDFL+  K GV+N ++A+TETA+P VRA+L  HL +GI  H++I   MM 
Sbjct: 11 MDVLNDHVVATDFLISTKSGVKNYAVAITETATPRVRAILRKHLDEGINCHEKILNYMMT 70

Query: 61 KKWFHPYELNEQYQLDQLSAKNTVMIGQ 88
            ++HPY + EQY+ D  S + ++ + +
Sbjct: 71 NGYYHPYNMQEQYKTDMKSTETSLNLNR 98


>ref|NP_241609.1| spore coat protein [Bacillus halodurans]
 pir||G83742 spore coat protein BH0743 [imported] - Bacillus halodurans
          (strain C-125)
 dbj|BAB04462.1| spore coat protein [Bacillus halodurans]
          Length = 105

 Score = 73.2 bits (178), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/85 (43%), Positives = 57/85 (67%), Gaps = 1/85 (1%)

Query: 1  MPEMADMTFATDFLLRAKEGVRNLSIALTETASPDVRALLHNHLKQGIAMHQEITELMMR 60
          M  M D   ATD L+ AK G++N++ A++E+A+P+VRA L   L Q I  H ++TE MM+
Sbjct: 11 MGPMTDQVVATDMLIAAKAGIKNIATAISESATPEVRAALQQQLDQQIRFHGQMTEYMMK 70

Query: 61 KKWFHPYELNEQYQLDQLSAKNTVM 85
            ++HPY + EQ ++D L+A NT +
Sbjct: 71 NGYYHPYNMEEQVRVD-LAAANTAL 94


>ref|NP_390576.1| similar to spore coat protein [Bacillus subtilis]
 pir||D69970 spore coat protein homolog yraD - Bacillus subtilis
 emb|CAA63470.1| spore coat protein F [Bacillus subtilis]
 emb|CAB14640.1| yraD [Bacillus subtilis subsp. subtilis str. 168]
          Length = 99

 Score = 72.0 bits (175), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 49/73 (67%)

Query: 4  MADMTFATDFLLRAKEGVRNLSIALTETASPDVRALLHNHLKQGIAMHQEITELMMRKKW 63
          + D   A D L+ AK GVRN ++A TE  +P+V+ +L  HL++ + MH++++  MM K W
Sbjct: 14 LTDQIIAMDLLISAKNGVRNYAMAATEAGTPEVKEVLIRHLEEALDMHEQLSSYMMEKGW 73

Query: 64 FHPYELNEQYQLD 76
          +HP+  +EQ +L+
Sbjct: 74 YHPWNPDEQVKLN 86


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.320    0.133    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 162,267,937
Number of extensions: 5192109
Number of successful extensions: 12382
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 12382
Number of HSP's successfully gapped: 4
Length of query: 115
Length of database: 757,237,578
Length adjustment: 80
Effective length of query: 35
Effective length of database: 540,029,658
Effective search space: 18901038030
Effective search space used: 18901038030
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 120 (50.8 bits)