BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0417.0019.p
         (66 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_390575.1| similar to spore coat protein [Bacillus subtili...    61   7e-09

>ref|NP_390575.1| similar to spore coat protein [Bacillus subtilis]
 pir||E69970 spore coat protein homolog yraE - Bacillus subtilis
 emb|CAA63471.1| spore coat protein F [Bacillus subtilis]
 emb|CAB14639.1| yraE [Bacillus subtilis subsp. subtilis str. 168]
          Length = 65

 Score = 61.2 bits (147), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 27/39 (69%), Positives = 34/39 (87%)

Query: 4  NYALHEMLEVHEIAAFKTVCMTKSKTMQALVTDPELMRI 42
           YALHE+LEV E+ AFKT+C+TKSKTM+ALV+DP+L  I
Sbjct: 2  EYALHEVLEVQEMTAFKTLCLTKSKTMKALVSDPKLKEI 40


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.320    0.125    0.340 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 51,104,780
Number of extensions: 882850
Number of successful extensions: 1342
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1342
Number of HSP's successfully gapped: 1
Length of query: 66
Length of database: 757,237,578
Length adjustment: 37
Effective length of query: 29
Effective length of database: 656,778,915
Effective search space: 19046588535
Effective search space used: 19046588535
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 120 (50.8 bits)