BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0417.0009.p (607 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_242977.1| BH2111~unknown conserved protein [Bacillus halo... 558 e-157 ref|NP_242779.1| BH1913~unknown conserved protein in bacilli [Ba... 309 1e-82 ref|NP_814961.1| ABC transporter, substrate-binding protein, put... 101 4e-20 dbj|BAB03318.1| AlgQ2 [Sphingomonas sp.] 89 4e-16 ref|NP_357574.1| AGR_L_3560p [Agrobacterium tumefaciens] >gi|179... 89 4e-16 >ref|NP_242977.1| BH2111~unknown conserved protein [Bacillus halodurans] pir||G83913 hypothetical protein BH2111 [imported] - Bacillus halodurans (strain C-125) dbj|BAB05830.1| BH2111~unknown conserved protein [Bacillus halodurans] Length = 561 Score = 558 bits (1437), Expect = e-157, Method: Compositional matrix adjust. Identities = 273/543 (50%), Positives = 368/543 (67%), Gaps = 9/543 (1%) Query: 70 TSDGASNSPAAKGNSASGSG---DTSPVTYKYFSFGGPKKQVLGSETTIGKELQKQTGVD 126 ++D A+++ N+A+ + PVTY YF+ G K + +ET IGK L+++TGV+ Sbjct: 23 SNDAATDAHDQDENNATNDAVEVELEPVTYHYFNAGAAGKDLNTNETYIGKMLEEKTGVN 82 Query: 127 WNIEYLVGDGDTKAGVMIASGDYPDIIDSSGQMAKLMDAGAFIPLDDLIEKYGPNIKRVY 186 + +E+LVGD + + GVMIASGDYPD+I + L+DAGAFIPL+DL+E++GPN+ Y Sbjct: 83 FKVEHLVGDINQRTGVMIASGDYPDVIVPDAAIDALLDAGAFIPLNDLLEEHGPNLLEAY 142 Query: 187 GPYYEKFRQKDGKLYFFPYGANIG-YLSEPNFQTG-FYIQRSVLKEFNYPKITTLDEYFD 244 G Y F DG +Y+ P+GA + + PN G F+IQR +LKE+ +P+I TLDEY D Sbjct: 143 GDYLHMFTHDDGNIYYIPFGATVNEFQPNPNIDQGAFWIQRGILKEYGFPEINTLDEYLD 202 Query: 245 LIKQYKEKHPQVDGKDTIGFATFAGEQGSFFTLQNPAMHLAGSPNDGGTMVDMKTHEAKL 304 +I +Y +++P++DG TI F + FF N HLAG PNDGG MVDM THEA + Sbjct: 203 IITRYAKENPEIDGMRTIPFTGLTYDW-RFFAFTNVPNHLAGYPNDGGVMVDMDTHEASV 261 Query: 305 VAGSEYQKRWIQKLNEANAQGLVDPESFTMNRDQYLAKLTSGRVLGYFSYSWQVGDATNN 364 A SEY KRW++ LNE NA+GL+D E F MN D+YL KL+SGRVLG+F Y WQ G A+N Sbjct: 262 YADSEYAKRWLKALNELNAEGLLDQEMFVMNYDEYLEKLSSGRVLGFFDYGWQFGTASNA 321 Query: 365 LKKAGDDDKRYVALPIVFDKGIKDQYIDPPGFVNNYGVGITVKAKDPVRIIKYFDNLLKE 424 L+ AG+ D+ Y+ALP+VFD+GIKDQYIDPP F N GVGITV A++P RII+++D L+KE Sbjct: 322 LRDAGNPDREYMALPVVFDEGIKDQYIDPPAFTGNRGVGITVNAENPERIIQFWDELIKE 381 Query: 425 ENQILVQWGIKDQSYAVDENGRFTYANDEQRQIHEDPEKSMKFGFDYFNYSWPRYGNSSV 484 +NQ LV WGI+ + Y VDENGRF Y +EQ +I + +FG F +SWPR + Sbjct: 382 DNQRLVMWGIEGEHYNVDENGRF-YQTEEQIEIVNNQNFRDEFGMTTFEWSWPRI--NGT 438 Query: 485 LQDGNAYGPGSQPEVATFGYTGGDKQLLAAYGVKTFSELFSNPDERPWFPAWSIALEQGS 544 DGNA QPEVA Y DK+ L AYG+ TF+ELFS PDERPW+PAWS +EQGS Sbjct: 439 FSDGNAVEARRQPEVAFASYNDDDKEYLEAYGISTFAELFSEPDERPWYPAWSANIEQGS 498 Query: 545 PEQMFITKADDLQRNHLPSMILDTPANFSKNWDDYMNQFNKLDKKTYEDFITKKVQDRVA 604 P+Q+F +AD++ R H ++L PA+F K WDD++ + LD YE+F T+ VQ RV Sbjct: 499 PQQIFEERADEILRRHYARIVLADPADFDKEWDDFVQAYRSLDVDAYENFFTEVVQARVR 558 Query: 605 GKW 607 G+W Sbjct: 559 GEW 561 >ref|NP_242779.1| BH1913~unknown conserved protein in bacilli [Bacillus halodurans] pir||A83889 hypothetical protein BH1913 [imported] - Bacillus halodurans (strain C-125) dbj|BAB05632.1| BH1913~unknown conserved protein in bacilli [Bacillus halodurans] Length = 551 Score = 309 bits (792), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 182/536 (33%), Positives = 279/536 (52%), Gaps = 14/536 (2%) Query: 73 GASNSPAAKGNSASGSGDTSPVTYKYFSFGGPKKQVLGSETTIGKELQKQTGVDWNIEYL 132 G S S + +S PVT+ FS P Q E+++ +++ + TGV E+ Sbjct: 21 GCSQSTSTNDQESS----DEPVTFTLFS-ADPHTQWDNMESSVNQKIVEATGVTLEGEFD 75 Query: 133 VGDGDTKAGVMIASGDYPDIIDSSGQMAKLMDAGAFIPLDDLIEKYGPNIKRVYGPYYEK 192 V GD K +M ASGDYPD+I G L+DAGA I L DLIE++ PN+K++YG Y+++ Sbjct: 76 VNGGDQKISLMAASGDYPDLIWPKGNSNILVDAGALIDLTDLIEEHAPNLKKIYGDYFDR 135 Query: 193 FR--QKDGKLYFFPYGANIGYLSEPNFQTGFYIQRSVLKEFNYPKITTLDEYFDLIKQYK 250 + +D +Y P EP GF +Q V+KE YP I T+ ++ I+ YK Sbjct: 136 LKWSTEDPSIYILPTAEVDHTYWEPGH--GFMLQHDVVKELGYPDIRTVYDFEQAIRDYK 193 Query: 251 EKHPQVDGKDTIGFATFAGEQGSFFTLQNPAMHLAGSPNDGGTMVDMKTHEAKLVAGSEY 310 EK+P++DG+ TIG + A + + NPA+++ G +DG +D T+EA L Sbjct: 194 EKYPEIDGQPTIGLSLLADDWRILISTTNPALYVTGVSDDGEYYIDPDTYEATLHYRRPE 253 Query: 311 QKRWIQKLNEANAQGLVDPESFTMNRDQYLAKLTSGRVLGYFSYSWQVGDATNNLKKAGD 370 +K + + LN N GL+DPESF + DQYLAK++SGRVL +W VG+A L++ G Sbjct: 254 EKDYFRWLNHMNDSGLLDPESFVQSYDQYLAKISSGRVLAAIDANWHVGEAQRALREEGK 313 Query: 371 DDKRYVALPIVFDKGIKDQYIDPPGFVNNYGVGITVKAKDPVRIIKYFDNLLKEENQILV 430 ++ + P + K G++ +G+GITV +DPVR IK+ D L EE QIL Sbjct: 314 HERMFGMYPATLSEEYKHPNFQSSGYLGGWGIGITVDCEDPVRAIKFLDFLASEEGQILQ 373 Query: 431 QWGIKDQSYAVDENGRFTYANDEQRQIHEDPEKSMKFGFDYFNYSWPRYGNSSVLQDGNA 490 WGI+ + Y V +G +E + + G P YG+ G Sbjct: 374 NWGIEGEHYEV-VDGERVIPEEEMDRRNNSANYVRDTGIGVLKGFAPSYGDGMTDSTGQT 432 Query: 491 YGPGSQPEVATFGYTGGDKQLLAAYGVKTFSELFSNPDE---RPWFPAWSIALEQGSPEQ 547 Y S P+ YT +K++LA YGV+ + +L+ +E +PW W+I +E GS + Sbjct: 433 YTIVS-PDQIIEAYTDVEKEVLANYGVEMWKDLYPAKEEFPVKPWGAGWNITVESGSQLE 491 Query: 548 MFITKADDLQRNHLPSMILDTPANFSKNWDDYMNQFNKLDKKTYEDFITKKVQDRV 603 + + D+ + +P IL +P +F WD +MN + + E T+ VQ+RV Sbjct: 492 LINQRCRDIMKKRVPEAILASPEDFDDIWDAFMNDLEQAGVEEAEKAFTELVQERV 547 >ref|NP_814961.1| ABC transporter, substrate-binding protein, putative [Enterococcus faecalis V583] gb|AAO81031.1| ABC transporter, substrate-binding protein, putative [Enterococcus faecalis V583] Length = 532 Score = 101 bits (252), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 102/383 (26%), Positives = 181/383 (47%), Gaps = 61/383 (15%) Query: 118 ELQKQTGVDWNIEYLVGDGDTKAGVMIASGDYPDII---DSSGQMAKLMDAGAFIPLDDL 174 +++K VD IE++ GD D+K MI+SGD PDI+ + +GQ A D+ A+ L+DL Sbjct: 78 QIKKDLNVD--IEFISGD-DSKLNAMISSGDMPDIVTLTEKTGQAALKADSWAY-SLNDL 133 Query: 175 IEKYGPNIKRVYGP-YYEKFRQKDGKLYFFPYGANIGYLSEPNFQTG-------FYIQRS 226 +KY P + +V ++ + +DGK Y +P +N ++ ++++G F I+ Sbjct: 134 AKKYDPYLMKVVNQDTFKWYALEDGKTYGYPNYSN----TKADYESGNIPVNDNFVIRED 189 Query: 227 VLKEFNYPKITTLDEYFDLIKQYKEKHPQVDGKDTIGFATFAGEQGSFFTLQNPAMHLAG 286 V P ++T + + +++Q KEK+P++ +GF T G F + G Sbjct: 190 VYNALGKPDVSTPENFEKVMQQIKEKYPEMT---PMGFTTVGDGAGPFL---DKLQDFLG 243 Query: 287 SP--NDGGTMVDMKTHEAKLVAGSEYQKRWIQKLNEANAQGLVDPESFTMNRDQYLAKLT 344 P + G D + L W++ N+ G + +SFT + + K+ Sbjct: 244 VPLEDKNGKYYDRNLDKEYL--------EWLKTFNDVYRAGNISDDSFTDDGATFDEKVK 295 Query: 345 SGR--VLGYFSYSWQVGDATNNLKKAGDDDKRYVAL----------PIVFDKGIKDQYID 392 G + S Q G+ T +KK+G RY+A+ P + GI Sbjct: 296 QGNYATMLVAGTSGQGGNFTEFMKKSG---TRYIAIDGPSSTSGRKPTLNQTGIS----- 347 Query: 393 PPGFVNNYGVGITVKAKDPVRIIKYFDNLLKEENQILVQWGIKDQSYAVDENGRFTYAND 452 G+++NY IT AKDP ++ + F L+ E QIL ++G++ +YA ++ G+ Y + Sbjct: 348 --GWLSNY---ITKDAKDPAKVTQLFTYLIDEPGQILTKYGVEGVTYAYNDQGKIDYLPE 402 Query: 453 EQRQIHEDPEK-SMKFGFDYFNY 474 ++ D + + K+G F Y Sbjct: 403 VKKLEQTDNDAYNKKYGISRFLY 425 >dbj|BAB03318.1| AlgQ2 [Sphingomonas sp.] Length = 516 Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 108/401 (26%), Positives = 171/401 (42%), Gaps = 54/401 (13%) Query: 74 ASNSPAAKGNSASGSGDTSPVTYKYFSFGGPKKQVLGSETTIGKELQKQTGVDWNIEYLV 133 A +P A A+ D P+T K K V + KE + T V ++ + Sbjct: 16 AFAAPVATAKEATWVTD-KPLTLK-IHMHFRDKWVWDENWPVAKESFRLTNV--KLQSVA 71 Query: 134 GDGDTKA----GVMIASGDYPDIIDSSGQMAKLMD---AGAFIPLDDLIEKYGPNIKRVY 186 T + +M+ASGD PD++ K + GAF+PL+ LI++Y P+IK + Sbjct: 72 NKAATNSQEQFNLMMASGDLPDVVGGDNLKDKFIQYGQEGAFVPLNKLIDQYAPHIKAFF 131 Query: 187 GPYYE---KFRQKDGKLYFFPYGANIGYLSEPNFQTGFYIQRSVLKEFNYPKITTLDEYF 243 + E + DG +YF PY + G ++ G++I+ LK+ N +DE + Sbjct: 132 KSHPEVERAIKAPDGNIYFIPYVPD-GVVAR-----GYFIREDWLKKLNLKPPQNIDELY 185 Query: 244 DLIKQYKEKHPQVDGK-DTIGFATFAGEQGSFFTLQN-PAMHLAGSPN------DGGTMV 295 ++K +KEK P +GK D + F ++ F L N +GS N D G V Sbjct: 186 TVLKAFKEKDPNGNGKADEVPFIDRHPDE--VFRLVNFWGARSSGSDNYMDFYIDNGR-V 242 Query: 296 DMKTHEAKLVAGSEYQKRWIQKLNEANAQGLVDPESFTMNRDQYLAKLTSGRVLGYFSYS 355 E G ++ +W + +GL+D E FT R + G LG F++ Sbjct: 243 KHPWAETAFRDGMKHVAQWYK-------EGLIDKEIFT--RKARAREQMFGGNLGGFTHD 293 Query: 356 WQVGDATNN--LKKAGDDDKRYVALPIVFDKGIK-----DQYIDPPGFVNNYGVGITVKA 408 W T N L K K P KG + Q + P G+ ITVK Sbjct: 294 WFASTMTFNEGLAKTVPGFKLIPIAPPTNSKGQRWEEDSRQKVRPDGW------AITVKN 347 Query: 409 KDPVRIIKYFDNLLKEENQILVQWGIKDQSYAVDENGRFTY 449 K+PV IK+FD + + +G+ +Y + +NG+ + Sbjct: 348 KNPVETIKFFDFYFSRPGRDISNFGVPGVTYDI-KNGKAVF 387 >ref|NP_357574.1| AGR_L_3560p [Agrobacterium tumefaciens] ref|NP_533524.1| ABC transporter, membrane spanning protein [sugar] [Agrobacterium tumefaciens str. C58 (U. Washington)] pir||E98354 algQ1 (AB011415) [imported] - Agrobacterium tumefaciens (strain C58, Cereon) pir||AB2928 hypothetical protein Atu3024 [imported] - Agrobacterium tumefaciens (strain C58, Dupont) gb|AAK90359.1| AGR_L_3560p [Agrobacterium tumefaciens str. C58 (Cereon)] gb|AAL43840.1| ABC transporter, membrane spanning protein [sugar] [Agrobacterium tumefaciens str. C58 (U. Washington)] Length = 522 Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 86/315 (27%), Positives = 149/315 (47%), Gaps = 30/315 (9%) Query: 142 VMIASGDYPDII--DSSGQM----AKLMDAGAFIPLDDLIEKYGPNIKRVYGPYYE---K 192 ++IASG+ PDI+ D++G + + GAFIPLD+LIE+ PN+K + + E Sbjct: 85 LLIASGNLPDIVGGDANGGLKEDFIRYGLEGAFIPLDELIEENAPNLKAFFDSHKEIRNA 144 Query: 193 FRQKDGKLYFFPYGANIGYLSEPNFQTGFYIQRSVLKEFNYPKITTLDEYFDLIKQYKEK 252 DGKLYF P Y+ + F G++I++ L + + T +E ++++K +++K Sbjct: 145 ISGPDGKLYFIP------YVPDGKFSRGWFIRQDWLDKLGLKQPETPEEVYEVLKAFRDK 198 Query: 253 HPQVDG-KDTIGFATFAGEQGSFFTLQNPA-MHLAGSPNDGGTMVDMKTHEAKLVA--GS 308 P +G KD + + FA E+ L N ++GS G D ++ +L Sbjct: 199 DPNGNGLKDEVPY--FAREEIDAVRLINLWDARVSGSERYG----DFAVYDGQLRHPWAE 252 Query: 309 EYQKRWIQKLNEANAQGLVDPESFTMNRDQYLAKLTSGRVLGYFSYSWQVGDATNNLKKA 368 E K I + + +GL+D E FT R + G LG ++ W +T N Sbjct: 253 ENYKTGISNVAKWYKEGLIDKEIFT--RGARSREYLLGNNLGGMTHDWFASTSTYN-DAL 309 Query: 369 GDDDKRYVALPIVFDKGIKDQYIDPPGFVNNYGVGITVKAKD--PVRIIKYFDNLLKEEN 426 + + P++ K + Q + + VG + A + PV IKYFD ++ Sbjct: 310 SPKIEGFALKPMLPPKTVSGQRFEDSRRLRVQPVGWAISATNEHPVETIKYFDFWFSQQG 369 Query: 427 QILVQWGIKDQSYAV 441 +IL +G++ +Y + Sbjct: 370 RILSNFGVEGLTYEM 384 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.316 0.136 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 1,005,916,486 Number of extensions: 47364067 Number of successful extensions: 109854 Number of sequences better than 1.0e-05: 15 Number of HSP's gapped: 109840 Number of HSP's successfully gapped: 15 Length of query: 607 Length of database: 757,237,578 Length adjustment: 132 Effective length of query: 475 Effective length of database: 398,844,510 Effective search space: 189451142250 Effective search space used: 189451142250 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 129 (54.3 bits)