BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0417.0003.p
         (173 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EAB54078.1| unknown [environmental sequence]                        68   1e-10
ref|NP_758980.1| unknown [Zymomonas mobilis] >gi|26983923|gb|AAL...    59   4e-08
ref|NP_865495.1| probable lipase/esterase [Pirellula sp. 1] >gi|...    59   5e-08
gb|EAE17314.1| unknown [environmental sequence]                        55   6e-07
gb|EAI82202.1| unknown [environmental sequence]                        55   9e-07

>gb|EAB54078.1| unknown [environmental sequence]
          Length = 190

 Score = 67.8 bits (164), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 6/84 (7%)

Query: 1   MRKHAGEYGIDLNRVAVWGDSSGGHLSLMTGLTIGEYDN-----GLYSEQTDEVSAIIDY 55
           +R + G+YGID  R+AVWG S+GGHL  M G + GE +      G + +++  VSA+++Y
Sbjct: 73  LRGNCGKYGIDPARIAVWGSSAGGHLVSMLG-SSGEVEALEGSLGKHLKESSRVSAVVNY 131

Query: 56  YGVSDLLTLGKYNDILDHDAADSP 79
           +G S LL +  +   + H+A DSP
Sbjct: 132 FGPSALLQMDDHPSKISHNAPDSP 155


>ref|NP_758980.1| unknown [Zymomonas mobilis]
 gb|AAL36115.1| unknown [Zymomonas mobilis]
          Length = 361

 Score = 58.9 bits (141), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 41/67 (61%), Gaps = 2/67 (2%)

Query: 1   MRKHAGEYGIDLNRVAVWGDSSGGHLSLMTGLTIGE--YDNGLYSEQTDEVSAIIDYYGV 58
           +R HA EYGID  R+ V GDS+GG L+ +   T  E  YD G + +Q+  V A +  YG+
Sbjct: 158 LRAHASEYGIDPKRIGVLGDSAGGWLAQLMATTGAEKKYDKGDFLDQSSAVQAAVSLYGI 217

Query: 59  SDLLTLG 65
           SD+  +G
Sbjct: 218 SDVRNIG 224


>ref|NP_865495.1| probable lipase/esterase [Pirellula sp. 1]
 emb|CAD73179.1| probable lipase/esterase [Pirellula sp.]
          Length = 373

 Score = 58.9 bits (141), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 48/83 (57%), Gaps = 5/83 (6%)

Query: 1   MRKHAGEYGIDLNRVAVWGDSSGGHLSLMTGLTIGEYD----NGLYSEQTDEVSAIIDYY 56
           +R+HA +YGID +R+AV G S+GGHL  + G T G+ +    +G + EQ+  V A++D Y
Sbjct: 193 LREHADQYGIDPDRIAVGGSSAGGHLVALLG-TSGDVEELEGSGGWPEQSSRVQAVVDLY 251

Query: 57  GVSDLLTLGKYNDILDHDAADSP 79
           G +D       N    H+   SP
Sbjct: 252 GPTDFSKFVTTNGFESHNRDGSP 274


>gb|EAE17314.1| unknown [environmental sequence]
          Length = 270

 Score = 55.1 bits (131), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 48/74 (64%), Gaps = 8/74 (10%)

Query: 1   MRKHAGEYGIDLNRVAVWGDSSGGHLSLMTGL--TIGEYDNGLYSEQTDEVSAIIDYYGV 58
           + ++A +YG D  R+ V G+S+GGHL+L TG+  +  E D      +T +V+AI+++YG+
Sbjct: 101 VARNADQYGFDKTRLVVSGNSAGGHLALTTGMIPSEAELDRQCIGNETPKVAAIVNWYGI 160

Query: 59  SDLLTLGKYNDILD 72
           +D+      ND+LD
Sbjct: 161 TDV------NDLLD 168


>gb|EAI82202.1| unknown [environmental sequence]
          Length = 170

 Score = 54.7 bits (130), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 42/66 (63%), Gaps = 3/66 (4%)

Query: 1   MRKHAGEYGIDLNRVAVWGDSSGGHLSLMTGLTIGE---YDNGLYSEQTDEVSAIIDYYG 57
           ++ H+ EYGID NRVA+ G S+G HL+LM   T+G+    ++      +  V A++++YG
Sbjct: 102 LKNHSIEYGIDSNRVAIVGGSAGAHLALMAAYTMGDTFGIEDCQSGSASHGVKAVVNFYG 161

Query: 58  VSDLLT 63
            SDL T
Sbjct: 162 PSDLTT 167


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.318    0.137    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 255,017,325
Number of extensions: 9811686
Number of successful extensions: 24058
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 24066
Number of HSP's successfully gapped: 5
Length of query: 173
Length of database: 757,237,578
Length adjustment: 117
Effective length of query: 56
Effective length of database: 439,570,995
Effective search space: 24615975720
Effective search space used: 24615975720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 121 (51.2 bits)