BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0416.0007.p
         (96 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_465936.1| similar to aminotransferase [Listeria monocytog...   120   1e-26
sp|Q9K7A0|CSD_BACHD Probable cysteine desulfurase                     119   3e-26
ref|NP_244336.1| nitrogen fixation protein [Bacillus halodurans]...   119   3e-26
ref|NP_471838.1| similar to aminotransferase [Listeria innocua] ...   117   7e-26
ref|NP_834652.1| Cysteine desulfhydrase [Bacillus cereus ATCC 14...   117   1e-25

>ref|NP_465936.1| similar to aminotransferase [Listeria monocytogenes EGD-e]
 pir||AE1376 aminotransferase homolog lmo2413 [imported] - Listeria
          monocytogenes (strain EGD-e)
 emb|CAD00491.1| lmo2413 [Listeria monocytogenes]
          Length = 408

 Score =  120 bits (300), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 58/79 (73%), Positives = 65/79 (82%)

Query: 1  LGQKVNGHPLAYLDSAALAQKPIQVIEALKHYYERNNANVHRGVHTLGSRATDAYEGARA 60
          L Q++N  PLAYLD+AA +QKP QVIEAL HYYE +NANVHRGVHTL +RATDAYE AR 
Sbjct: 14 LAQEINEKPLAYLDNAATSQKPKQVIEALTHYYEFDNANVHRGVHTLAARATDAYESARG 73

Query: 61 KAARFIHAEWVEEIIFTRG 79
          K A+FIHA  V EIIFTRG
Sbjct: 74 KVAKFIHAREVAEIIFTRG 92


>sp|Q9K7A0|CSD_BACHD Probable cysteine desulfurase
          Length = 406

 Score =  119 bits (297), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 58/79 (73%), Positives = 62/79 (78%)

Query: 1  LGQKVNGHPLAYLDSAALAQKPIQVIEALKHYYERNNANVHRGVHTLGSRATDAYEGARA 60
          L Q+VNG PL YLDSAA +QKPI VIEAL  YY R N+NVHRGVHTLG+ ATD YEGAR 
Sbjct: 13 LDQEVNGSPLVYLDSAATSQKPIAVIEALDDYYRRYNSNVHRGVHTLGTLATDGYEGARE 72

Query: 61 KAARFIHAEWVEEIIFTRG 79
          K  RFIHA   EEIIFTRG
Sbjct: 73 KIRRFIHASSTEEIIFTRG 91


>ref|NP_244336.1| nitrogen fixation protein [Bacillus halodurans]
 pir||E84083 nitrogen fixation protein BH3469 [imported] - Bacillus halodurans
          (strain C-125)
 dbj|BAB07188.1| nitrogen fixation protein [Bacillus halodurans]
          Length = 252

 Score =  119 bits (297), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 58/79 (73%), Positives = 62/79 (78%)

Query: 1  LGQKVNGHPLAYLDSAALAQKPIQVIEALKHYYERNNANVHRGVHTLGSRATDAYEGARA 60
          L Q+VNG PL YLDSAA +QKPI VIEAL  YY R N+NVHRGVHTLG+ ATD YEGAR 
Sbjct: 13 LDQEVNGSPLVYLDSAATSQKPIAVIEALDDYYRRYNSNVHRGVHTLGTLATDGYEGARE 72

Query: 61 KAARFIHAEWVEEIIFTRG 79
          K  RFIHA   EEIIFTRG
Sbjct: 73 KIRRFIHASSTEEIIFTRG 91


>ref|NP_471838.1| similar to aminotransferase [Listeria innocua]
 pir||AG1745 aminotransferase homolog lin2508 [imported] - Listeria innocua
          (strain Clip11262)
 emb|CAC97735.1| lin2508 [Listeria innocua]
          Length = 408

 Score =  117 bits (294), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 57/79 (72%), Positives = 64/79 (81%)

Query: 1  LGQKVNGHPLAYLDSAALAQKPIQVIEALKHYYERNNANVHRGVHTLGSRATDAYEGARA 60
          L Q++N  PLAYLD+AA +QKP QVI AL HYYE +NANVHRGVHTL +RATDAYE AR 
Sbjct: 14 LAQEINEKPLAYLDNAATSQKPKQVIAALTHYYEFDNANVHRGVHTLAARATDAYESARG 73

Query: 61 KAARFIHAEWVEEIIFTRG 79
          K A+FIHA  V EIIFTRG
Sbjct: 74 KVAKFIHAREVAEIIFTRG 92


>ref|NP_834652.1| Cysteine desulfhydrase [Bacillus cereus ATCC 14579]
 gb|AAP11853.1| Cysteine desulfhydrase [Bacillus cereus ATCC 14579]
          Length = 406

 Score =  117 bits (292), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 55/79 (69%), Positives = 65/79 (82%)

Query: 1  LGQKVNGHPLAYLDSAALAQKPIQVIEALKHYYERNNANVHRGVHTLGSRATDAYEGARA 60
          L QKVNG  L Y DSAA +QKPIQVIE L+ YY+  N+NVHRGVHTLG++ATDAYEGAR 
Sbjct: 13 LDQKVNGKQLVYFDSAATSQKPIQVIETLERYYKEYNSNVHRGVHTLGTKATDAYEGARE 72

Query: 61 KAARFIHAEWVEEIIFTRG 79
          K  +FI+A+ +EEIIFTRG
Sbjct: 73 KVRKFINAKSMEEIIFTRG 91


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.323    0.137    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 138,044,787
Number of extensions: 4610746
Number of successful extensions: 12549
Number of sequences better than 1.0e-05: 441
Number of HSP's gapped: 12576
Number of HSP's successfully gapped: 441
Length of query: 96
Length of database: 757,237,578
Length adjustment: 64
Effective length of query: 32
Effective length of database: 583,471,242
Effective search space: 18671079744
Effective search space used: 18671079744
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 120 (50.8 bits)