BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0416.0005.p
         (63 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_242054.1| phosphoserine aminotransferase [Bacillus halodu...    83   2e-15
ref|NP_388883.1| phosphoserine aminotransferase [Bacillus subtil...    81   6e-15
ref|ZP_00044613.1| COG1932: Phosphoserine aminotransferase [Magn...    77   1e-13
sp|Q59196|SERC_BACCI Phosphoserine aminotransferase (PSAT) >gi|2...    77   1e-13
pir||S71439 phosphoserine transaminase (EC 2.6.1.52) - Bacillus ...    75   3e-13

>ref|NP_242054.1| phosphoserine aminotransferase [Bacillus halodurans]
 sp|Q9KDM4|SERC_BACHD Phosphoserine aminotransferase (PSAT)
 pir||D83798 phosphoserine aminotransferase serC [imported] - Bacillus
          halodurans (strain C-125)
 dbj|BAB04907.1| phosphoserine aminotransferase [Bacillus halodurans]
          Length = 361

 Score = 83.2 bits (204), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 36/63 (57%), Positives = 47/63 (74%)

Query: 1  MVNTYNFNAGPGALPAEVLQEAQEELRDYRGIGASILEISHRSKVYEAIHHEAQQLIKEL 60
          M   YNFNAGP ALP EVL++AQ EL D+   G S++E+SHRSK YE +HH A QL+++L
Sbjct: 1  MKRAYNFNAGPSALPTEVLEKAQSELLDFENTGMSVMELSHRSKEYENVHHTAAQLLRDL 60

Query: 61 MGI 63
          + I
Sbjct: 61 LNI 63


>ref|NP_388883.1| phosphoserine aminotransferase [Bacillus subtilis]
 sp|P80862|SERC_BACSU Phosphoserine aminotransferase (PSAT) (Vegetative protein 234)
          (VEG234)
 pir||D69705 phosphoserine aminotransferase serC - Bacillus subtilis
 emb|CAA74411.1| hypothetical protein [Bacillus subtilis]
 emb|CAB12842.1| phosphoserine aminotransferase [Bacillus subtilis subsp. subtilis
          str. 168]
          Length = 359

 Score = 81.3 bits (199), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 38/63 (60%), Positives = 48/63 (76%)

Query: 1  MVNTYNFNAGPGALPAEVLQEAQEELRDYRGIGASILEISHRSKVYEAIHHEAQQLIKEL 60
          M  T NFNAGP ALP EVLQ+AQ+E  D+   G S++E+SHRSK YEA+H +A+ L+ EL
Sbjct: 1  MERTTNFNAGPAALPLEVLQKAQKEFIDFNESGMSVMELSHRSKEYEAVHQKAKSLLIEL 60

Query: 61 MGI 63
          MGI
Sbjct: 61 MGI 63


>ref|ZP_00044613.1| COG1932: Phosphoserine aminotransferase [Magnetococcus sp. MC-1]
          Length = 390

 Score = 77.0 bits (188), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/63 (53%), Positives = 46/63 (73%)

Query: 1  MVNTYNFNAGPGALPAEVLQEAQEELRDYRGIGASILEISHRSKVYEAIHHEAQQLIKEL 60
          M   YNF+AGP  LP  VL++AQ E+ DY+G G S++E+SHRS  Y AI  EA+ L++EL
Sbjct: 30 MSRVYNFSAGPAVLPLSVLEQAQAEMLDYQGTGMSVMEMSHRSAAYMAIIAEAEALVREL 89

Query: 61 MGI 63
          MG+
Sbjct: 90 MGV 92


>sp|Q59196|SERC_BACCI Phosphoserine aminotransferase (PSAT)
 emb|CAA86558.1| phosphoserine aminotransferase [Bacillus circulans subsp.
          alkalophilus]
          Length = 362

 Score = 77.0 bits (188), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 36/58 (62%), Positives = 43/58 (74%)

Query: 5  YNFNAGPGALPAEVLQEAQEELRDYRGIGASILEISHRSKVYEAIHHEAQQLIKELMG 62
          YNFNAGP ALP EVL+ AQ E  DY+  G SI+E+SHR  VYEA+H+EAQ  +  LMG
Sbjct: 6  YNFNAGPAALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARMLALMG 63


>pir||S71439 phosphoserine transaminase (EC 2.6.1.52) - Bacillus circulans
          Length = 362

 Score = 75.5 bits (184), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 35/58 (60%), Positives = 43/58 (74%)

Query: 5  YNFNAGPGALPAEVLQEAQEELRDYRGIGASILEISHRSKVYEAIHHEAQQLIKELMG 62
          YNFNAGP ALP EVL+ AQ E  DY+  G SI+E+SHR  VYEA+H+EAQ  +  L+G
Sbjct: 6  YNFNAGPAALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLG 63


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.316    0.133    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 90,440,334
Number of extensions: 2573280
Number of successful extensions: 7357
Number of sequences better than 1.0e-05: 195
Number of HSP's gapped: 7370
Number of HSP's successfully gapped: 195
Length of query: 63
Length of database: 757,237,578
Length adjustment: 35
Effective length of query: 28
Effective length of database: 662,209,113
Effective search space: 18541855164
Effective search space used: 18541855164
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 120 (50.8 bits)