BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0416.0003.p (155 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|EAK56123.1| unknown [environmental sequence] 77 2e-13 gb|EAH90062.1| unknown [environmental sequence] 74 1e-12 ref|ZP_00162162.1| hypothetical protein Avar125001 [Anabaena var... 74 1e-12 ref|NP_488778.1| transcriptional regulator [Nostoc sp. PCC 7120]... 74 1e-12 gb|EAH90243.1| unknown [environmental sequence] 73 2e-12 >gb|EAK56123.1| unknown [environmental sequence] Length = 503 Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 48/151 (31%), Positives = 73/151 (48%), Gaps = 3/151 (1%) Query: 6 GIRISAIVGPAEAIAQLANVQAFTYRHLPFLEQMALAHFIEHGYFMRHMRRAKNIYRRRH 65 G+R+ +V P A A YR L+Q LA FI G+F+ H+R+ + +Y +R Sbjct: 342 GLRVGYLVAPEPLAESFATASAELYREGQLLQQAVLAEFIAEGHFVSHIRKMRTLYGQRR 401 Query: 66 EVMQKAITASGLGNKFTLRGIETGLHVLLEADESFDEETMTFRALQGGVRVHQLHSYCLE 125 EV+ A+ A GN G + GLH++ + E D+ + AL+ + V L Y + Sbjct: 402 EVLLDAV-AQRYGNTLHALGSDAGLHLVTQLPEGVDDRAVAQAALERNIVVRPLSGYYAD 460 Query: 126 SRR--KGWVLGFAKVDERFIEEGMYRLAETV 154 R G +LG+A V E I LAE + Sbjct: 461 RERAAPGLLLGYACVPEDEIATAFATLAEAI 491 >gb|EAH90062.1| unknown [environmental sequence] Length = 507 Score = 73.9 bits (180), Expect = 1e-12, Method: Composition-based stats. Identities = 47/151 (31%), Positives = 74/151 (49%), Gaps = 3/151 (1%) Query: 6 GIRISAIVGPAEAIAQLANVQAFTYRHLPFLEQMALAHFIEHGYFMRHMRRAKNIYRRRH 65 G+R+ +V P + + YR ++Q LA FI G+ H+RR + +Y R Sbjct: 346 GLRMGYMVVPEHLVDTFRTGLSELYREGQLMQQAVLAEFIMDGHLTSHVRRMRTLYGERR 405 Query: 66 EVMQKAITASGLGNKFTLRGIETGLHVLLEADESFDEETMTFRALQGGVRVHQLHSY--C 123 ++M AI G+ + G E GLH++L ++ D+ +T A GV V L SY Sbjct: 406 QLMIDAIRTR-FGDALPVMGDEAGLHLVLGLPDACDDRAVTQSAFDAGVIVRPLTSYYSS 464 Query: 124 LESRRKGWVLGFAKVDERFIEEGMYRLAETV 154 L++ R+G +LG+A V I LA T+ Sbjct: 465 LDTARRGLLLGYACVPHEGIGPAFDTLANTI 495 >ref|ZP_00162162.1| hypothetical protein Avar125001 [Anabaena variabilis ATCC 29413] Length = 490 Score = 73.6 bits (179), Expect = 1e-12, Method: Composition-based stats. Identities = 39/150 (26%), Positives = 79/150 (52%), Gaps = 2/150 (1%) Query: 6 GIRISAIVGPAEAIAQLANVQAFTYRHLPFLEQMALAHFIEHGYFMRHMRRAKNIYRRRH 65 +R+ +V P + A + R LEQ AL FI G+ RH+R+ +++Y +R Sbjct: 337 ALRLGYLVLPQNLVNIFARAKWLADRQCSLLEQYALTDFITEGHLERHIRKMRSLYNQRR 396 Query: 66 EVMQKAITASGLGNKFTLRGIETGLHVLLEADESFDEETMTFRALQGGVRVHQLH-SYCL 124 + + +++ S GN+ + G G+H++++ D ++ + A GV + + Y Sbjct: 397 QTLVQSLF-SHFGNRAKILGENAGMHLMVKIDTQISDDEIVQSAALSGVSIGAAYPQYLK 455 Query: 125 ESRRKGWVLGFAKVDERFIEEGMYRLAETV 154 +S ++ G+A+++E+ I+EG+ RLA + Sbjct: 456 DSPGSEFIFGYAELNEQQIQEGVRRLARVI 485 >ref|NP_488778.1| transcriptional regulator [Nostoc sp. PCC 7120] pir||AB2398 transcription regulator alr4738 [imported] - Nostoc sp. (strain PCC 7120) dbj|BAB76437.1| transcriptional regulator [Nostoc sp. PCC 7120] Length = 490 Score = 73.6 bits (179), Expect = 1e-12, Method: Composition-based stats. Identities = 40/150 (26%), Positives = 79/150 (52%), Gaps = 2/150 (1%) Query: 6 GIRISAIVGPAEAIAQLANVQAFTYRHLPFLEQMALAHFIEHGYFMRHMRRAKNIYRRRH 65 +R+ +V P + A + R LEQ AL FI G+ RH+RR +++Y +R Sbjct: 337 ALRLGYLVLPQNLVNIFARAKWLADRQCSLLEQYALTDFITEGHLERHIRRMRSLYNQRR 396 Query: 66 EVMQKAITASGLGNKFTLRGIETGLHVLLEADESFDEETMTFRALQGGVRVHQLH-SYCL 124 + + +++ S GN+ + G G+H++++ D ++ + A GV + + Y Sbjct: 397 QTLVQSLF-SHFGNRAKILGENAGMHLMVKIDTQISDDEIVQSADLSGVSIGAAYPQYLK 455 Query: 125 ESRRKGWVLGFAKVDERFIEEGMYRLAETV 154 +S ++ G+A+++E+ I+EG+ RLA + Sbjct: 456 DSPGSEFIFGYAELNEQQIQEGVRRLARVI 485 >gb|EAH90243.1| unknown [environmental sequence] Length = 463 Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 43/134 (32%), Positives = 71/134 (52%), Gaps = 2/134 (1%) Query: 6 GIRISAIVGPAEAIAQLANVQAFTYRHLPFLEQMALAHFIEHGYFMRHMRRAKNIYRRRH 65 G+RI +V PAE L+ V T R + Q+ALA FI HG F +H+R A++ YR+R Sbjct: 311 GLRIGFMVVPAELRPALSAVWHATARSVGVAPQLALARFIGHGDFAKHLRAARHAYRQRR 370 Query: 66 EVMQKAITASGLGNKFTLRGIETGLHVLLEADESFDEETMTFRALQGGVRVHQLHSYCLE 125 +++ + A G ++T+ G G H +L D+ T RA G+ + + +C Sbjct: 371 DIVLDQL-AKHAGGRYTVSGEHAGFHFVLWLPPGMDDATYVARARADGIELQPIRGFCRS 429 Query: 126 SR-RKGWVLGFAKV 138 +R G V+G++ + Sbjct: 430 ARCEAGVVVGYSAL 443 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.327 0.140 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 207,715,711 Number of extensions: 7330526 Number of successful extensions: 21497 Number of sequences better than 1.0e-05: 79 Number of HSP's gapped: 21486 Number of HSP's successfully gapped: 79 Length of query: 155 Length of database: 757,237,578 Length adjustment: 113 Effective length of query: 42 Effective length of database: 450,431,391 Effective search space: 18918118422 Effective search space used: 18918118422 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 120 (50.8 bits)