BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0416.0001.p (200 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00019234.1| hypothetical protein [Chloroflexus aurantiacus] 124 2e-27 ref|ZP_00045633.1| COG0664: cAMP-binding proteins - catabolite g... 113 2e-24 ref|ZP_00015292.1| COG0664: cAMP-binding proteins - catabolite g... 109 4e-23 ref|ZP_00151618.1| hypothetical protein Daro145601 [Dechloromona... 103 2e-21 ref|ZP_00054981.1| COG0664: cAMP-binding proteins - catabolite g... 101 1e-20 >ref|ZP_00019234.1| hypothetical protein [Chloroflexus aurantiacus] Length = 226 Score = 124 bits (310), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 64/163 (39%), Positives = 93/163 (57%) Query: 31 GTVRIFKGNEQGREITLYRVQDGQNCVLMMASILGDTPYXXXXXXXXXXXXXXXPIPLFK 90 G +R+FK E GREITLYR G++C+L + +L + + +F+ Sbjct: 59 GQIRVFKIGETGREITLYRFGRGESCILTTSCVLSNHQFPAIAVVEREATAFLVGQAIFR 118 Query: 91 KWIEICQPLKQFIFGQMVERITSVMTLLDNVAFRPINYRIAQFLLGRTDENHATLRITHE 150 WIE + ++F + R+ SVM ++D +AFR ++ R+A FLL + + TL +TH+ Sbjct: 119 DWIERYSAWRDYVFQLLSRRLASVMAIIDEIAFRRVDVRLAAFLLRQAVGDPPTLNLTHQ 178 Query: 151 QAAIELGTAREVVSRALKVLTDNRLISQGRGYIEVLDRDRLIQ 193 Q A ELGT+REVVSR L ++ LIS RG I V DR RL Q Sbjct: 179 QIAAELGTSREVVSRILADFSEEGLISSSRGQITVCDRTRLYQ 221 >ref|ZP_00045633.1| COG0664: cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Magnetococcus sp. MC-1] Length = 234 Score = 113 bits (283), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 60/191 (31%), Positives = 104/191 (54%), Gaps = 5/191 (2%) Query: 2 QCEIRTVSPSTSLSIREGHIFQHAVFVLCGTVRIFKGNEQGREITLYRVQDGQNCVLMMA 61 QC++ T+ P+ +L +GH Q F+L G++R+FK E GREI+LYRV+ + C++ ++ Sbjct: 42 QCQVITI-PARTLVFDDGHACQALPFLLKGSIRVFKQGENGREISLYRVKPDELCIITLS 100 Query: 62 SILGDTPYXXXXXXXXXXXXXXXPIPLFKKWIEICQPLKQFIFGQMVERITSVMTLLDNV 121 ++G TPY P LF I + F R+ +M L++ V Sbjct: 101 CLMGGTPYPATGVTESEVEAVALPRALFLTLISREPSFRDMAFAHYSSRLAELMQLVEAV 160 Query: 122 AFRPINYRIAQFLLGRTDENHATLRITHEQAAIELGTAREVVSRALKVLTDNRLISQGRG 181 F+ ++ R+A++L+ + + ++H+Q A ELG+ RE++SR LK N I GR Sbjct: 161 TFQKLDQRLAEWLV----QQEGPILVSHQQMADELGSVREMISRLLKQFEANGWIVLGRK 216 Query: 182 YIEVLDRDRLI 192 +E+++R L+ Sbjct: 217 QVEIVNRSALL 227 >ref|ZP_00015292.1| COG0664: cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Rhodospirillum rubrum] Length = 216 Score = 109 bits (273), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 59/178 (33%), Positives = 92/178 (51%), Gaps = 3/178 (1%) Query: 10 PSTSLSIREGHIFQHAVFVLCGTVRIFKGNEQGREITLYRVQDGQNCVLMMASILGDTPY 69 P+ ++ R G + V V+ G +R+ + + GREI LYRV+ GQ+CVL ++ Y Sbjct: 31 PAGTILFRTGARCESYVLVVSGAIRVHRTSPGGREIVLYRVEGGQSCVLTTNCLIAARDY 90 Query: 70 XXXXXXXXXXXXXXXPIPLFKKWIEICQPLKQFIFGQMVERITSVMTLLDNVAFRPINYR 129 P P F++ + + + F+F R++ ++ L++ VAF I+ R Sbjct: 91 DAEGVAETDVEMIALPAPTFRRLLAASEAFRDFVFAAYASRLSDLLLLIEEVAFGRIDVR 150 Query: 130 IAQFLLGRTDENHATLRITHEQAAIELGTAREVVSRALKVLTDNRLISQGRGYIEVLD 187 +A +L R D+ A ITH+ A+ELGTAREV+SR LK + GRG I D Sbjct: 151 LAGWLAARGDQPIA---ITHQDLAVELGTAREVISRQLKDFERRGWVDLGRGIIAPRD 205 >ref|ZP_00151618.1| hypothetical protein Daro145601 [Dechloromonas aromatica RCB] Length = 222 Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 56/165 (33%), Positives = 89/165 (53%), Gaps = 3/165 (1%) Query: 27 FVLCGTVRIFKGNEQGREITLYRVQDGQNCVLMMASILGDTPYXXXXXXXXXXXXXXXPI 86 +L G++++ K GRE+ LYRV G +C++ + +LG T Y P+ Sbjct: 55 LLLEGSIKVIKLAASGRELMLYRVPPGGSCIISSSCLLGHTDYNARGIAETPLTLLAIPV 114 Query: 87 PLFKKWIEICQPLKQFIFGQMVERITSVMTLLDNVAFRPINYRIAQFLLGRTDENHATLR 146 F + + P + F+F +RI +M L++ VAF ++ R+A+ +L R N TL Sbjct: 115 AEFARLMVEHPPFRDFVFHLFADRIGELMQLVEEVAFARLDQRLAKLILAR---NETTLN 171 Query: 147 ITHEQAAIELGTAREVVSRALKVLTDNRLISQGRGYIEVLDRDRL 191 +TH+Q A ELG+ RE+VSR LK +++ GR + V DRD L Sbjct: 172 VTHQQLADELGSVREIVSRLLKGFAAQGVVTLGREQLTVTDRDGL 216 >ref|ZP_00054981.1| COG0664: cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Magnetospirillum magnetotacticum] Length = 223 Score = 101 bits (251), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 62/192 (32%), Positives = 95/192 (49%), Gaps = 2/192 (1%) Query: 6 RTVS-PSTSLSIREGHIFQHAVFVLCGTVRIFKGNEQGREITLYRVQDGQNCVLMMASIL 64 RT S P+ + EG Q + +L G VR+ K E GREI LYRV G+ C++ A ++ Sbjct: 31 RTASLPAGTRVFGEGSPCQAYLILLSGEVRVQKVAESGREIVLYRVAAGETCIVTTACLM 90 Query: 65 GDTPYXXXXXXXXXXXXXXXPIPLFKKWIEICQPLKQFIFGQMVERITSVMTLLDNVAFR 124 Y P F++ + +P + F+F RI+ ++ L+D VAF Sbjct: 91 SGVDYDAEGIADSDITAQILPASGFRELLGRSEPFRDFVFRAYGSRISGLLMLIDEVAFG 150 Query: 125 PINYRIAQFLLGRTDENHATLRITHEQAAIELGTAREVVSRALKVLTDNRLISQGRGYIE 184 ++ R+A LL R + + TH+ A+ELG+AREVVSR LK + RG + Sbjct: 151 RMDRRLAACLLARA-KGSGQVAATHQDLALELGSAREVVSRLLKDFERRGWVVLSRGSVA 209 Query: 185 VLDRDRLIQVLQ 196 + D L ++ Q Sbjct: 210 LTDCAALAEIQQ 221 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.326 0.140 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 240,715,438 Number of extensions: 7894416 Number of successful extensions: 22634 Number of sequences better than 1.0e-05: 18 Number of HSP's gapped: 22655 Number of HSP's successfully gapped: 18 Length of query: 200 Length of database: 757,237,578 Length adjustment: 119 Effective length of query: 81 Effective length of database: 434,140,797 Effective search space: 35165404557 Effective search space used: 35165404557 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 123 (52.0 bits)