BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0415.0008.p
         (176 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_845281.1| hypothetical protein [Bacillus anthracis str. A...    91   1e-17
ref|NP_832678.1| hypothetical protein [Bacillus cereus ATCC 1457...    89   3e-17
ref|ZP_00103636.1| hypothetical protein [Desulfitobacterium hafn...    72   4e-12

>ref|NP_845281.1| hypothetical protein [Bacillus anthracis str. Ames]
 gb|AAP26767.1| hypothetical protein BA2945 [Bacillus anthracis str. Ames]
          Length = 220

 Score = 90.5 bits (223), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/174 (33%), Positives = 88/174 (50%), Gaps = 8/174 (4%)

Query: 5   WTNQTIEAWEKAQDIGYLVGNSDFIWGEMLGDYHWMMRQMKKRIPNYLGEFPIWLW--TE 62
           +T QT EAW++ + +GYL GN +FI  + +  Y WM+R  K ++P+Y G +PIW+W    
Sbjct: 4   YTVQTEEAWKQFKKLGYLEGNKEFIDSDDIYSYDWMVRVAKTKLPHYEGNYPIWVWEANN 63

Query: 63  KPDLRRSGHFNGGTHAVSLEVEIPSEQVLLSDFDAWHCVLNDSFMALDEAEWEAFYRNEL 122
            P+          +  V L +++P + VL S FD W C + D    L          +E 
Sbjct: 64  YPNRNHKAWGRKNSKMVILTLDVPKKWVLWSYFDYWCCAMTDGSTYLHTKNKCTL--DEW 121

Query: 123 KMSKEESWERIFNLGLLRESPWW--NSEPHL--QGVSGKIKISHVCNVREFIAR 172
            +  ++ +  IFN   L   P W  + E  L  QGV GKI +S V  VR F A+
Sbjct: 122 YIYMDKKYGIIFNFDYLLSHPDWYLDKEDSLEKQGVIGKIPLSFVKKVRRFRAK 175


>ref|NP_832678.1| hypothetical protein [Bacillus cereus ATCC 14579]
 gb|AAP09879.1| hypothetical protein [Bacillus cereus ATCC 14579]
          Length = 220

 Score = 89.4 bits (220), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/183 (34%), Positives = 90/183 (49%), Gaps = 20/183 (10%)

Query: 5   WTNQTIEAWEKAQDIGYLVGNSDFIWGEMLGDYHWMMRQMKKRIPNYLGEFPIWLWTEKP 64
           +T QT EAW++ + +GYL GN +FI  + +  Y WM+R  K R+P+Y G +PIW+W    
Sbjct: 4   YTVQTEEAWKQFKKLGYLEGNKEFIDPDDVYSYDWMVRVAKTRLPHYEGNYPIWVWEANN 63

Query: 65  DLRRSGHFNGGTHA--VSLEVEIPSEQVLLSDFDAWHCVLNDSFMALDEA------EWEA 116
              R+    G T++  + L +++P E +L S FD W C + D    L         EW  
Sbjct: 64  YPNRNHKAWGRTNSKMIILTLDVPKEWLLWSYFDYWCCAMTDGSTYLHTKNKCTLDEWYT 123

Query: 117 FYRNELKMSKEESWERIFNLGLLRESPWW--NSEPHL--QGVSGKIKISHVCNVREFIAR 172
           +   E  +        IF+   L   P W    E  L  QGV GKI +S V  VR F A+
Sbjct: 124 YMDKEYGI--------IFDFDYLLSHPDWCLGKEDSLEKQGVIGKIPLSFVKKVRRFRAK 175

Query: 173 GTK 175
             K
Sbjct: 176 TDK 178


>ref|ZP_00103636.1| hypothetical protein [Desulfitobacterium hafniense]
          Length = 193

 Score = 72.4 bits (176), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 60/199 (30%), Positives = 90/199 (45%), Gaps = 34/199 (17%)

Query: 3   RYWTNQTIEAWEKAQDIGYLVGNSDFIWGEMLGD------YHWMMRQMKKRI--PNYLGE 54
           R WT Q   A++   + G L  + D      L D      Y W++ +MK R+  P    E
Sbjct: 2   RLWTIQDKAAYDDLCEKGVL--HCDAALAGWLKDDLFRKSYDWLVGEMKGRVGEPPQGVE 59

Query: 55  FPIWLW------TEKPDLRRSGHFNGGTHAVSLEVEIPSEQVLLSDFDAWHCVLNDSFMA 108
           +P+W W        KPDLRR    N       +E EIP E++LLSD + WH VLNDS+ +
Sbjct: 60  YPVWAWYLLLGKNVKPDLRRVEFRNYVGEHYVIEAEIPDEKILLSDEEYWHLVLNDSYFS 119

Query: 109 -----LDEAE------WEAFYRNELKMSKEESWERIFNLGLLRESPWWNSEPHLQGVSGK 157
                 DEAE      +      E +  K ESW+++F+       PW      +Q    +
Sbjct: 120 DAPEDDDEAEELADKWFAGLPAQEQEQVKRESWKKVFDKAC---CPW----TFVQATFWE 172

Query: 158 IKISHVCNVREFIARGTKI 176
           ++   + +VR+F  +   I
Sbjct: 173 LRKEQIVSVRKFYGKAKPI 191


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.320    0.136    0.457 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 300,751,518
Number of extensions: 12629408
Number of successful extensions: 23960
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 23958
Number of HSP's successfully gapped: 3
Length of query: 176
Length of database: 757,237,578
Length adjustment: 117
Effective length of query: 59
Effective length of database: 439,570,995
Effective search space: 25934688705
Effective search space used: 25934688705
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 121 (51.2 bits)