BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0412.0017.p (486 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00037527.1| COG2723: Beta-glucosidase/6-phospho-beta-gluc... 708 0.0 ref|NP_786432.1| 6-phospho-beta-glucosidase [Lactobacillus plant... 667 0.0 ref|ZP_00037207.1| COG2723: Beta-glucosidase/6-phospho-beta-gluc... 564 e-159 ref|NP_469633.1| similar to phospho-beta-glucosidase [Listeria i... 563 e-159 ref|NP_463792.1| similar to phospho-beta-glucosidase [Listeria m... 563 e-159 >ref|ZP_00037527.1| COG2723: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase [Enterococcus faecium] Length = 503 Score = 708 bits (1828), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/484 (69%), Positives = 389/484 (80%), Gaps = 1/484 (0%) Query: 2 SKGFPENFLWGGAIAANQAEGAWNVDGKGPSVADIAMYRPHLNVEDYEAHQVVTTGMIER 61 + FP+ FLWGGAIAANQ EGAWNVDGKG SVAD+A Y+P+L+ +D+ AH VT I+ Sbjct: 19 TTSFPKGFLWGGAIAANQVEGAWNVDGKGLSVADMATYKPNLDNKDFAAHMHVTLQSIKE 78 Query: 62 AMKDPDVNKYPKRRGIDFYHRYKEDLALFAEMGFKALRVSIAWSRIFPTXXXXXXXXXXL 121 A +D YPKRRG+DFYH YKEDLALFAEMGFK LR+SIAW+R+FPT + Sbjct: 79 ASEDKSDKWYPKRRGVDFYHHYKEDLALFAEMGFKTLRLSIAWTRLFPTGEELEPNEKGV 138 Query: 122 KFYDGLFSEMRRLGIEPIVTLSHYEMPLALSVKYNGWVERKVIDYFVKFSNVCFSRYKDL 181 FY+ +F EM+RLGIEPIVTLSHYEMPLAL+VKYNGWVER+VID FV+F+NVCF R+ Sbjct: 139 AFYENVFKEMQRLGIEPIVTLSHYEMPLALAVKYNGWVERRVIDDFVRFANVCFDRFGKY 198 Query: 182 VKYWLTFNEIDSIIRHPFTTAGIVPERCPEGKVEETIYQALHHQFVASALVTADCHRIIP 241 VKYWLTFNEIDSI RHPFTTAGI+ E+ EG+ + IYQALHHQFVASALVT D H IP Sbjct: 199 VKYWLTFNEIDSIHRHPFTTAGIIQEKSAEGQEAQDIYQALHHQFVASALVTKDAHEKIP 258 Query: 242 GSQVGCMLTMLTTYPNTCHPKDVEITLMRNLHTYFYADVQVFGEYPPLIETMLEQKNIHL 301 GSQVGCMLT L TYP TC P+DVE+TL +NL FYADVQV GEYP LIE LE + I + Sbjct: 259 GSQVGCMLTKLMTYPLTCAPEDVELTLKKNLENNFYADVQVKGEYPALIEKDLENRGIQI 318 Query: 302 QMEPGDKEILRKHTVDFVSFSYYMSLTESAKEGLERTSGNTITGVKNPYLPVTDWGWQVD 361 +ME D+EIL+KHTVDFVSFSYYMS+ ESA ERT GNT+ GVKNP+LP TDWGWQ+D Sbjct: 319 KMEDEDREILKKHTVDFVSFSYYMSMAESADPNAERTPGNTVLGVKNPHLPSTDWGWQID 378 Query: 362 PVGLKISLIELYDRYRKPLLIVENGMGAVDRVESDGSIHDDYRINYFREHFKQMKEAVEA 421 P GLKISLIELYDRY+ PL+IVENGMGAVD+V DG IHD YRI+YF+ HF+QMKEA++ Sbjct: 379 PKGLKISLIELYDRYQVPLMIVENGMGAVDQV-VDGKIHDPYRIDYFKAHFQQMKEAIDE 437 Query: 422 GVDLFGYTSWGAIDIISASTSQMSKRYGFIYVDQDDEGNGSLQRSRKDSFYWYKKVIESN 481 GVDL YTSWG ID++SA TSQMSKRYGFIYVD DDEGNG+ R +KDSF WYK+VIE+N Sbjct: 438 GVDLIAYTSWGPIDLVSAGTSQMSKRYGFIYVDADDEGNGTYNRLKKDSFNWYKEVIETN 497 Query: 482 GEDL 485 G L Sbjct: 498 GASL 501 >ref|NP_786432.1| 6-phospho-beta-glucosidase [Lactobacillus plantarum WCFS1] emb|CAD65295.1| 6-phospho-beta-glucosidase [Lactobacillus plantarum WCFS1] Length = 483 Score = 667 bits (1721), Expect = 0.0, Method: Compositional matrix adjust. Identities = 315/484 (65%), Positives = 376/484 (77%), Gaps = 3/484 (0%) Query: 4 GFPENFLWGGAIAANQAEGAWNVDGKGPSVADIAMYRPHLNVEDYEAHQVVTTGMIERAM 63 G ++FLWGGAIAANQ EGAWN+DGKG SVAD+A Y+P+++V+DY VT IE+A+ Sbjct: 2 GLRKDFLWGGAIAANQVEGAWNIDGKGLSVADVATYKPNVDVKDYRKQVGVTKSDIEKAI 61 Query: 64 KDPDVNKYPKRRGIDFYHRYKEDLALFAEMGFKALRVSIAWSRIFPTXXXXXXXXXXLKF 123 +D D YPKRRGIDFYHRY EDL LF EMGFKALR+SIAW+RIFPT L + Sbjct: 62 QDTDTKYYPKRRGIDFYHRYPEDLELFHEMGFKALRLSIAWTRIFPTGEEFEPNQAGLDY 121 Query: 124 YDGLFSEMRRLGIEPIVTLSHYEMPLALSVKYNGWVERKVIDYFVKFSNVCFSRYKDLVK 183 Y +F++M LGIEPIVTLSHYEMPLAL+ KYNGW RKVID FV+F VCF YK+ VK Sbjct: 122 YKAMFNKMHELGIEPIVTLSHYEMPLALASKYNGWENRKVIDLFVRFCKVCFETYKNDVK 181 Query: 184 YWLTFNEIDSIIRHPFTTAGIVPERCPEGKVEETIYQALHHQFVASALVTADCHRIIPGS 243 YWLTFNEIDS+ RHPFT+AGI+P++ + + YQA HHQFVASALVT CH +IPGS Sbjct: 182 YWLTFNEIDSVTRHPFTSAGIIPDQT--DNLLQAEYQAFHHQFVASALVTKSCHEVIPGS 239 Query: 244 QVGCMLTMLTTYPNTCHPKDVEITLMRNLHTYFYADVQVFGEYPPLIETMLEQKNIHLQM 303 QVGCMLT LT YPN+ P+DV + +N YF ADVQVFGEYPPL+ +++ IH+ M Sbjct: 240 QVGCMLTKLTDYPNSSDPRDVLASFNKNTMNYFPADVQVFGEYPPLVLNYFKKQKIHIDM 299 Query: 304 EPGDKEILRKHTVDFVSFSYYMSLTESAKE-GLERTSGNTITGVKNPYLPVTDWGWQVDP 362 D EIL+++TVDFV+FSYYMSL S E L T+GNTI G KNP+LPVT+WGW VDP Sbjct: 300 TASDLEILKENTVDFVTFSYYMSLVSSYDENNLTLTTGNTIVGGKNPHLPVTEWGWTVDP 359 Query: 363 VGLKISLIELYDRYRKPLLIVENGMGAVDRVESDGSIHDDYRINYFREHFKQMKEAVEAG 422 VGL+ISL++LYDRY KPL+IVENGMGA D + +D IHDDYRI YFR HF +M +AV+AG Sbjct: 360 VGLRISLLQLYDRYHKPLMIVENGMGAKDELTADQKIHDDYRIKYFRAHFNEMIKAVDAG 419 Query: 423 VDLFGYTSWGAIDIISASTSQMSKRYGFIYVDQDDEGNGSLQRSRKDSFYWYKKVIESNG 482 VDL GYTSW ID++SASTSQMSKRYGFIYVD+DD GNGSL+R RKDSF WY+KVI++NG Sbjct: 420 VDLLGYTSWAPIDLVSASTSQMSKRYGFIYVDEDDLGNGSLKRYRKDSFTWYQKVIQTNG 479 Query: 483 EDLD 486 LD Sbjct: 480 TSLD 483 >ref|ZP_00037207.1| COG2723: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase [Enterococcus faecium] Length = 485 Score = 564 bits (1453), Expect = e-159, Method: Compositional matrix adjust. Identities = 269/486 (55%), Positives = 347/486 (71%), Gaps = 5/486 (1%) Query: 3 KGFPENFLWGGAIAANQAEGAWNVDGKGPSVADIAMYRPHLNVEDYEAHQVVTTGMIERA 62 K FPE FLWGGA AANQ EGAW+VD KG SV+D+ + L E + + T +A Sbjct: 2 KKFPEGFLWGGATAANQCEGAWDVDEKGLSVSDVYTFDSDLPKEKWTDQWHMMTHQQVKA 61 Query: 63 MKDPDVNKY-PKRRGIDFYHRYKEDLALFAEMGFKALRVSIAWSRIFPTXXXXXXXXXXL 121 +DP+ Y PKR G DFYH +KED+ LFAEMGFK R+SIAW+RIFP L Sbjct: 62 AQDPNSKYYYPKRHGNDFYHHFKEDIRLFAEMGFKCYRMSIAWTRIFPHGDEETPNEAGL 121 Query: 122 KFYDGLFSEMRRLGIEPIVTLSHYEMPLALSVKYNGWVERKVIDYFVKFSNVCFSRYKDL 181 FYD +F E + GIEP+V+LSHYEMPL L +Y GW RK+I ++V+F+ F RYK+ Sbjct: 122 FFYDQVFDECLKYGIEPVVSLSHYEMPLYLVTEYGGWPNRKLIQFYVRFAETVFKRYKNK 181 Query: 182 VKYWLTFNEIDSIIRHPFTTAGIVPERCPEGKVEETIYQALHHQFVASALVTADCHRIIP 241 VKYW+TFNEI+ + HPF + G++ E P +E+ YQ HHQF+ASAL T CH II Sbjct: 182 VKYWMTFNEINCVKHHPFVSVGVIEENHPH--LEQAKYQGAHHQFIASALATKACHEIIK 239 Query: 242 GSQVGCMLTMLTTYPNTCHPKDVEITLMRNLHTYFYADVQVFGEYPPLIETMLEQKNIHL 301 GSQVGCM++ P +C P D++ T+ + + F++DVQ G YP + M E+K ++L Sbjct: 240 GSQVGCMISYQLLVPYSCDPDDIQKTIEQQRTSLFFSDVQARGYYPAYTQRMFEEKGVNL 299 Query: 302 QMEPGDKEILRKHTVDFVSFSYYMSLTESAK-EGLERTSGNTITG-VKNPYLPVTDWGWQ 359 ++E GD+EIL + VDFVSFSYYMS SA E E GN ITG +KNPYLP ++WGWQ Sbjct: 300 KIEVGDEEILAAYPVDFVSFSYYMSSAVSAHPENWEGVQGNLITGGIKNPYLPSSEWGWQ 359 Query: 360 VDPVGLKISLIELYDRYRKPLLIVENGMGAVDRVESDGSIHDDYRINYFREHFKQMKEAV 419 +DP GL+I+L +LYDRY+KPL I ENG+GA+D+VE DG++ DDYRI+Y ++H +QMKEA+ Sbjct: 360 IDPKGLRIALNQLYDRYQKPLFIAENGLGAIDKVEEDGTVQDDYRIDYLKQHIEQMKEAI 419 Query: 420 EAGVDLFGYTSWGAIDIISASTSQMSKRYGFIYVDQDDEGNGSLQRSRKDSFYWYKKVIE 479 + GVDLFGYTSWG IDI+SASTSQMSKRYG+IYVDQDDEGNG+ +R +K SF WY++VI+ Sbjct: 420 KDGVDLFGYTSWGCIDIVSASTSQMSKRYGYIYVDQDDEGNGTKKRLKKKSFDWYRQVIQ 479 Query: 480 SNGEDL 485 SNGE L Sbjct: 480 SNGEIL 485 >ref|NP_469633.1| similar to phospho-beta-glucosidase [Listeria innocua] pir||AI1468 phospho-beta-glucosidase homolog lin0288 [imported] - Listeria innocua (strain Clip11262) emb|CAC95521.1| lin0288 [Listeria innocua] Length = 486 Score = 563 bits (1451), Expect = e-159, Method: Compositional matrix adjust. Identities = 272/487 (55%), Positives = 341/487 (70%), Gaps = 5/487 (1%) Query: 1 MSKGFPENFLWGGAIAANQAEGAWNVDGKGPSVADIAMYRPHLNVEDYEAHQV-VTTGMI 59 + K FP+ FLWGGA AANQ EGA++VDGKG S AD+ + P E + H + V+ I Sbjct: 4 VKKQFPKGFLWGGATAANQVEGAYDVDGKGLSTADMVKFIP--KEERTKDHALDVSKAEI 61 Query: 60 ERAMKDPDVNKYPKRRGIDFYHRYKEDLALFAEMGFKALRVSIAWSRIFPTXXXXXXXXX 119 E + ++PKR G+DFYHRYKED+ALFAEMGFK R+S+ W+RIFP Sbjct: 62 EAIIAGKVEGRFPKREGVDFYHRYKEDIALFAEMGFKTFRLSLNWARIFPNGDDKEPNEK 121 Query: 120 XLKFYDGLFSEMRRLGIEPIVTLSHYEMPLALSVKYNGWVERKVIDYFVKFSNVCFSRYK 179 L+FYD +F E+ + IEP+VTLSHYE PL L++KYNGW +R+VI +F ++ F RYK Sbjct: 122 GLEFYDKVFDELLKYDIEPLVTLSHYETPLNLTLKYNGWADRRVIGFFTNYAETVFKRYK 181 Query: 180 DLVKYWLTFNEIDSIIRHPFTTAGIVPERCPEGKVEETIYQALHHQFVASALVTADCHRI 239 + VKYWLTFNEI+ I +T G++ E E YQA HHQFVASAL T H I Sbjct: 182 NKVKYWLTFNEINVISLSAYTGGGVLLEDAKNPL--ELSYQAGHHQFVASALATKLAHEI 239 Query: 240 IPGSQVGCMLTMLTTYPNTCHPKDVEITLMRNLHTYFYADVQVFGEYPPLIETMLEQKNI 299 IPGSQVGCML + TYP T +P D+ N F+ DV GEYP + ++ +I Sbjct: 240 IPGSQVGCMLARMATYPATNNPDDILKAQYENQQNLFFTDVHARGEYPSYMNRFFQENDI 299 Query: 300 HLQMEPGDKEILRKHTVDFVSFSYYMSLTESAKEGLERTSGNTITGVKNPYLPVTDWGWQ 359 ++ E GD EIL+ HTVDF+SFSYYMSL+ +A +R++GN + GVKN YL +DWGWQ Sbjct: 300 NIVKEVGDDEILKAHTVDFISFSYYMSLSATASPEGDRSAGNLMGGVKNEYLESSDWGWQ 359 Query: 360 VDPVGLKISLIELYDRYRKPLLIVENGMGAVDRVESDGSIHDDYRINYFREHFKQMKEAV 419 +DP GL+ +L +LY RY PL IVENG+GA D VE DG IHDDYRI+Y R+H +QMKEA+ Sbjct: 360 IDPKGLRWTLNDLYSRYELPLFIVENGLGAYDTVEEDGKIHDDYRIDYLRKHIEQMKEAI 419 Query: 420 EAGVDLFGYTSWGAIDIISASTSQMSKRYGFIYVDQDDEGNGSLQRSRKDSFYWYKKVIE 479 GVDL GYTSWG ID++SASTS+MSKRYGFIYVDQDD G G+L+RSRKDSF+WYKKVIE Sbjct: 420 ADGVDLMGYTSWGPIDLVSASTSEMSKRYGFIYVDQDDWGKGTLERSRKDSFFWYKKVIE 479 Query: 480 SNGEDLD 486 +NGEDLD Sbjct: 480 TNGEDLD 486 >ref|NP_463792.1| similar to phospho-beta-glucosidase [Listeria monocytogenes EGD-e] pir||AF1107 phospho-beta-glucosidase homolog lmo0261 [imported] - Listeria monocytogenes (strain EGD-e) emb|CAD00788.1| lmo0261 [Listeria monocytogenes] Length = 486 Score = 563 bits (1451), Expect = e-159, Method: Compositional matrix adjust. Identities = 272/487 (55%), Positives = 339/487 (69%), Gaps = 5/487 (1%) Query: 1 MSKGFPENFLWGGAIAANQAEGAWNVDGKGPSVADIAMYRP-HLNVEDYEAHQVVTTGMI 59 + K FP+ FLWGGA AANQ EGA++VDGKG S AD+ + P +D E V+ I Sbjct: 4 VKKQFPKGFLWGGATAANQVEGAYDVDGKGLSTADMVKFIPKEERTKDLELD--VSKAEI 61 Query: 60 ERAMKDPDVNKYPKRRGIDFYHRYKEDLALFAEMGFKALRVSIAWSRIFPTXXXXXXXXX 119 E + ++PKR G+DFYH YKED+ALFAEMGFK R+S+ W+RIFP Sbjct: 62 EAIIAGKVEGRFPKRDGVDFYHHYKEDIALFAEMGFKTFRLSLNWARIFPNGDDKEPNEK 121 Query: 120 XLKFYDGLFSEMRRLGIEPIVTLSHYEMPLALSVKYNGWVERKVIDYFVKFSNVCFSRYK 179 L+FYD +F E+ + IEP+VTLSHYE PL L++KYNGW +R+VI +F ++ F RYK Sbjct: 122 GLEFYDKVFDELLKYDIEPLVTLSHYETPLNLTLKYNGWADRRVIGFFTNYAETVFKRYK 181 Query: 180 DLVKYWLTFNEIDSIIRHPFTTAGIVPERCPEGKVEETIYQALHHQFVASALVTADCHRI 239 + VKYWLTFNEI+ I +T G++ E E YQA HHQFVASAL T H I Sbjct: 182 NKVKYWLTFNEINVISLSAYTGGGVLLEDAKNPL--ELSYQAGHHQFVASALATKLAHEI 239 Query: 240 IPGSQVGCMLTMLTTYPNTCHPKDVEITLMRNLHTYFYADVQVFGEYPPLIETMLEQKNI 299 IPGSQVGCML + TYP T +P D+ N F+ DV GEYP + ++ +I Sbjct: 240 IPGSQVGCMLARMATYPATNNPDDILKAQYENQQNLFFTDVHARGEYPSFMNRFFQENDI 299 Query: 300 HLQMEPGDKEILRKHTVDFVSFSYYMSLTESAKEGLERTSGNTITGVKNPYLPVTDWGWQ 359 H+ E GD EIL+ HTVDF+SFSYYMSL+ +A +R++GN + GVKN YL +DWGWQ Sbjct: 300 HIVKEVGDDEILKAHTVDFISFSYYMSLSATASPEGDRSAGNLMGGVKNEYLESSDWGWQ 359 Query: 360 VDPVGLKISLIELYDRYRKPLLIVENGMGAVDRVESDGSIHDDYRINYFREHFKQMKEAV 419 +DP GL+ +L +LY RY PL IVENG+GA D VE DG IHDDYRI+Y R+H +QMKEA+ Sbjct: 360 IDPKGLRWTLNDLYSRYELPLFIVENGLGAYDTVEEDGKIHDDYRIDYLRKHIEQMKEAI 419 Query: 420 EAGVDLFGYTSWGAIDIISASTSQMSKRYGFIYVDQDDEGNGSLQRSRKDSFYWYKKVIE 479 GVDL GYTSWG ID++SASTS+MSKRYGFIYVDQDD G G+L+RSRKDSF+WYKKVIE Sbjct: 420 ADGVDLMGYTSWGPIDLVSASTSEMSKRYGFIYVDQDDWGKGTLERSRKDSFFWYKKVIE 479 Query: 480 SNGEDLD 486 +NGEDLD Sbjct: 480 TNGEDLD 486 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.321 0.138 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 743,482,453 Number of extensions: 30738961 Number of successful extensions: 69718 Number of sequences better than 1.0e-05: 677 Number of HSP's gapped: 67591 Number of HSP's successfully gapped: 736 Length of query: 486 Length of database: 757,237,578 Length adjustment: 130 Effective length of query: 356 Effective length of database: 404,274,708 Effective search space: 143921796048 Effective search space used: 143921796048 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)