BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0412.0016.p (619 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00037526.1| COG2190: Phosphotransferase system IIA compon... 657 0.0 ref|NP_786433.1| beta-glucosides PTS, EIIBCA [Lactobacillus plan... 611 e-173 ref|NP_241162.1| PTS system, beta-glucoside-specific enzyme II, ... 396 e-109 ref|NP_784629.1| beta-glucosides PTS, EIIBCA [Lactobacillus plan... 381 e-104 ref|NP_268836.1| beta-glucoside permease IIABC component [Strept... 379 e-103 >ref|ZP_00037526.1| COG2190: Phosphotransferase system IIA components [Enterococcus faecium] Length = 635 Score = 657 bits (1695), Expect = 0.0, Method: Compositional matrix adjust. Identities = 331/611 (54%), Positives = 432/611 (70%), Gaps = 7/611 (1%) Query: 1 MNYKQTAEEILKHVGGKGNISYFEHCSTRLRFSLIDNTKADVKRLESIPGVIAVKMAGQC 60 MNYKQTAEE+L+++GG+ NIS+ EHCSTRLRF+L DN+K ++ +LE + GV+ V+ QC Sbjct: 22 MNYKQTAEEVLQYIGGEENISHLEHCSTRLRFTLKDNSKVNMSQLEKVDGVMGVRQNVQC 81 Query: 61 QVVIGNEVVEVYDAVNQLLGXXXXXXXXXXXXXXXXXXXXXXGSVILDFIVGVFQPLIPA 120 QV+IGN+VVEVYD V LLG GSV+LDFI+ +FQPLIPA Sbjct: 82 QVIIGNDVVEVYDEVKALLGDNVSSTEEAPKQKQKL------GSVLLDFIISIFQPLIPA 135 Query: 121 IAGAGMVKSXXXXXXXMNVLDPNGQTYKILFQIGDAALYFLPLLVAVTTANKLKVSTXXX 180 IAG G++KS + ++ QTY+IL +G A LYFLP+LVA+TTANKLKV+ Sbjct: 136 IAGGGVLKSLLLLASILGLISDQSQTYQILNLVGGAPLYFLPILVAMTTANKLKVNQLVA 195 Query: 181 XXXXXXXXXPNMTAMLGEGAQLFGLQIKSISYAYQVFPAILTVLLYAQMEKWFTRISPKV 240 P MTAML EGA + +I+YA QVFPAILTVL YAQ+EKWFT++SPK Sbjct: 196 VSAVGALILPEMTAMLAEGATFLSFGLDNIAYASQVFPAILTVLFYAQLEKWFTKVSPKP 255 Query: 241 IRTFFVPMMSLLITVPVSLLFLGPLGYMLGEGFSAIILTLFDKVGWIXXXXXXXXXXXMV 300 IR FFVPMMSLLITVP++LL LGPLGY +G FS+II++L+++ GW+ MV Sbjct: 256 IRIFFVPMMSLLITVPIALLLLGPLGYNVGTAFSSIIVSLYNQFGWVATGVLAAVLPLMV 315 Query: 301 SIGMHKALVPYALTAMGSTGKELLYLPASLAHNIAESGACFAVAVRTKDKALKATAISAG 360 GMHKA++PYA+++M G ELLYLPASLAHNI+E+GACFAV+++TKDK LK+TA+SAG Sbjct: 316 VTGMHKAMIPYAVSSMSELGAELLYLPASLAHNISEAGACFAVSIKTKDKKLKSTAVSAG 375 Query: 361 ISALFGITEPALYGVALQNKKVLASVMFSSLVGGAFIGIVGLQAYVLVGPGIASLSMFIS 420 ISALFGITEPALYGV + +K+VL +VMFSSL+GGAF GIV LQA+ LVGPGIAS++MF Sbjct: 376 ISALFGITEPALYGVTILHKRVLYAVMFSSLIGGAFAGIVALQAFALVGPGIASITMFAD 435 Query: 421 EDLPRNIINAVIALVISFVVAFVSTFILGKDNKAKEE-EQQLANPLTAVKEFKSPVIGEV 479 + P N++ A ISFVVAF + +L KD + E E ++ + + SPV G+V Sbjct: 436 KADPMNLVWAFAVSGISFVVAFAAALVLYKDKEVVNEVETKMETAVVSDAVLSSPVNGKV 495 Query: 480 IPLSEVKDEVFSSKAMGEGIAVIPAKGELYAPVDGKIEVVYNRNHAIAMSTANGMELLFH 539 I LSEVKD VFSS +G+G+A+IP +G L AP DG+I +V+ HAI + TANG ELLFH Sbjct: 496 ISLSEVKDTVFSSGMVGDGVAIIPEEGILVAPEDGEITMVFETKHAIGLKTANGAELLFH 555 Query: 540 VGIDTVRLRGKYFEPQVKAGDEVKAGDLLLKFDLEKIIEEGYDPVTIAIVTNKDKYAVEV 599 +GIDTV+L GK FE V++G++V G L+ FD++ I E G+DP I +VTNKD Y + Sbjct: 556 IGIDTVQLEGKGFEAFVRSGEKVAKGQKLIAFDIDLIKEAGFDPTVICVVTNKDNYTIRS 615 Query: 600 AELKQVNRQDT 610 L+++ D+ Sbjct: 616 FNLEKLVTNDS 626 >ref|NP_786433.1| beta-glucosides PTS, EIIBCA [Lactobacillus plantarum WCFS1] emb|CAD65296.1| beta-glucosides PTS, EIIBCA [Lactobacillus plantarum WCFS1] Length = 615 Score = 611 bits (1576), Expect = e-173, Method: Compositional matrix adjust. Identities = 304/620 (49%), Positives = 418/620 (67%), Gaps = 10/620 (1%) Query: 1 MNYKQTAEEILKHVGGKGNISYFEHCSTRLRFSLIDNTKADVKRLESIPGVI-AVKMAGQ 59 M++ +A+ I+ +VGG+ NI+ HCSTRLRF+L D KAD+++L+++ GV+ AV GQ Sbjct: 1 MDFNDSAQAIILNVGGEKNINSLIHCSTRLRFTLNDFAKADLEKLKTVDGVLGAVIAGGQ 60 Query: 60 CQVVIGNEVVEVYDAVNQLLGXXXXXXXXXXXXXXXXXXXXXXGSVILDFIVGVFQPLIP 119 CQV+IGN+VVE++DAV LLG G V+LDFI+GVFQPL+P Sbjct: 61 CQVIIGNDVVEMFDAVQALLGNSTQQNTARGPKQSW-------GKVVLDFIIGVFQPLVP 113 Query: 120 AIAGAGMVKSXXXXXXXMNVLDPNGQTYKILFQIGDAALYFLPLLVAVTTANKLKVSTXX 179 AIAG G++K+ + QTY+IL +G A LY LP+LVA+TTA KLKV+ Sbjct: 114 AIAGGGILKAVLMLLAMFGWISDKSQTYQILNLVGGAPLYLLPILVAITTAQKLKVNPLV 173 Query: 180 XXXXXXXXXXPNMTAMLGEGAQLFGLQIKSISYAYQVFPAILTVLLYAQMEKWFTRISPK 239 P++ AML +G LFGL + +++Y+ QVFPAIL VL YA ME++FT+ SPK Sbjct: 174 AVSTVGVLILPDLVAMLTKGTTLFGLHVTNVTYSSQVFPAILCVLFYALMERFFTKYSPK 233 Query: 240 VIRTFFVPMMSLLITVPVSLLFLGPLGYMLGEGFSAIILTLFDKVGWIXXXXXXXXXXXM 299 IR FFVPMMS+LIT P++LLFLGPLGY++GEGF ++IL L +GW+ M Sbjct: 234 PIRIFFVPMMSMLITAPITLLFLGPLGYVVGEGFVSVILFLNTHLGWVATALLAGVLPFM 293 Query: 300 VSIGMHKALVPYALTAMGSTGKELLYLPASLAHNIAESGACFAVAVRTKDKALKATAISA 359 V+ GMHK ++PY ++ + GKE LYLPASLAHNI+ESG CFA+ +RTKD L+A A+SA Sbjct: 294 VATGMHKPMIPYVVSTFSTVGKESLYLPASLAHNISESGTCFAITLRTKDTKLRAVALSA 353 Query: 360 GISALFGITEPALYGVALQNKKVLASVMFSSLVGGAFIGIVGLQAYVLVGPGIASLSMFI 419 GISALFGITEPALYGV LQ+K+ L SV+ ++GGA++GI GL + +VGPG+ASL MF+ Sbjct: 354 GISALFGITEPALYGVTLQHKRALISVITGGVIGGAYVGIAGLSGFTIVGPGLASLPMFV 413 Query: 420 SEDLPRNIINAVIALVISFVVAFVSTFILGKDNKAKEEEQQLANPLTAV--KEFKSPVIG 477 + P N+I+A+I ISFVV+FV I+ K+++ T V ++ +PV G Sbjct: 414 DKSNPANLIHALIGFGISFVVSFVIGLIIWKNDEEISSASDTGEATTTVVAEDLMAPVAG 473 Query: 478 EVIPLSEVKDEVFSSKAMGEGIAVIPAKGELYAPVDGKIEVVYNRNHAIAMSTANGMELL 537 +++ L++V D+VFS +G+GIAV P++G L AP DG IE+VY HA+ M T NG ELL Sbjct: 474 KILSLADVPDDVFSQGLIGQGIAVEPSEGSLIAPTDGTIEMVYETKHALGMRTDNGAELL 533 Query: 538 FHVGIDTVRLRGKYFEPQVKAGDEVKAGDLLLKFDLEKIIEEGYDPVTIAIVTNKDKYAV 597 FH+G+DTV+L GKYFE V+ G V+AG+LL FD+ KI GY+P+T+ +VTN+D Y V Sbjct: 534 FHIGLDTVQLNGKYFESHVQVGQHVQAGELLETFDVAKIKAAGYNPITMMVVTNQDSYTV 593 Query: 598 EVAELKQVNRQDTLMVVTAL 617 V E + ++M + L Sbjct: 594 AVDESNETLDNQSVMNIAKL 613 >ref|NP_241162.1| PTS system, beta-glucoside-specific enzyme II, ABC component [Bacillus halodurans] pir||H83686 PTS system, beta-glucoside-specific enzyme II, ABC component BH0296 [imported] - Bacillus halodurans (strain C-125) dbj|BAB04015.1| PTS system, beta-glucoside-specific enzyme II, ABC component [Bacillus halodurans] Length = 630 Score = 396 bits (1017), Expect = e-109, Method: Compositional matrix adjust. Identities = 234/634 (36%), Positives = 363/634 (57%), Gaps = 26/634 (4%) Query: 1 MNYKQTAEEILKHVGGKGNISYFEHCSTRLRFSLIDNTKADVKRLESIPGVIAVK-MAGQ 59 MNY+Q A++I+ HVGG+ N+ HC+TRLRFSLID++KAD ++L GVIAVK GQ Sbjct: 1 MNYEQVAKQIIDHVGGEENVKSLVHCATRLRFSLIDHSKADKEQLLKTDGVIAVKENGGQ 60 Query: 60 CQVVIGNEVVEVYDAVNQLLGXXXXXXXXXXXXXXXXXXXXXXGSVILDFIVGVFQPLIP 119 QVVIGN V EVY A+ ++ S ++D + +F PL+ Sbjct: 61 FQVVIGNRVPEVYAAIGKI--STILDDTTSTKKGGDTGNSGNFVSRLIDVVASIFTPLLG 118 Query: 120 AIAGAGMVKSXXXXXXXMNVLDPNGQTYKILFQIGDAALYFLPLLVAVTTANKLKVSTXX 179 +AGAG++K + LD TY IL D+ YFLP+L+AVT A K + + Sbjct: 119 VMAGAGILKGLLAIATNVGWLDSGETTYIILHAASDSMFYFLPILLAVTAARKFETNPFG 178 Query: 180 XXXXXXXXXXPNMTAMLGEG--AQLFGLQIKSISYAYQVFPAILTVLLYAQMEKWFTRIS 237 P++ + FG+ + ++Y VFP +L V + +EK+ + Sbjct: 179 AATIAGALIYPSIVELHDSAIDVTFFGIPVVLMNYTSTVFPILLAVFAMSYVEKFCNKKI 238 Query: 238 PKVIRTFFVPMMSLLITVPVSLLFLGPLGYMLGEGFSAIILTLFDKVGWIXXXXXXXXXX 297 + ++ F P++ L++ VPV+L+ LGP+G LG G +++I +F + Sbjct: 239 HEAVKNFVTPLILLVVIVPVTLIILGPIGVYLGNGIASVIQEIFTFSPVLAGAIVAGIWQ 298 Query: 298 XMVSIGMHKALVPYALTAMGSTGKELLYLPASLAHNIAESGACFAVAVRTKDKALKATAI 357 +V G+H ++P L + G++++ A+ A +++GA V +RTK+K LKA A Sbjct: 299 VLVIFGIHWGIIPIILNNLSVRGEDVIKAVAAPA-VFSQAGAALGVMLRTKNKKLKALAG 357 Query: 358 SAGISALFGITEPALYGVALQNKKVLASVMFSSLVGGAFIGIVGLQAYVLVGPGIASLSM 417 S I+ALFGITEPA+YGV L KK + S+ VGGA +G G A PG+ ++ + Sbjct: 358 STSITALFGITEPAVYGVTLPLKKPFIMAVISAAVGGAIVGHYGSVAVAPGAPGLLTIPI 417 Query: 418 FISEDLPRNIINAVIALVISFVVAFVSTFILG----------------KDNKAKEEEQQL 461 F ED R + VIA++ISFV+A V T+I+G +N+ K E+ + Sbjct: 418 FYPED-GRGFVAFVIAIIISFVLAAVLTYIVGFKDPVDDEDTLSNESGSENEVKREDDK- 475 Query: 462 ANPLTAVKEFKSPVIGEVIPLSEVKDEVFSSKAMGEGIAVIPAKGELYAPVDGKIEVVYN 521 P +A +E KSP+ GEV+PL+EV+D VFSS AMG+G+AV P +G L AP++G + ++ Sbjct: 476 KEP-SASEEIKSPLKGEVVPLTEVQDHVFSSGAMGKGVAVRPKEGRLVAPINGTVTSLFE 534 Query: 522 RNHAIAMSTANGMELLFHVGIDTVRLRGKYFEPQVKAGDEVKAGDLLLKFDLEKIIEEGY 581 HAI +++ NG E+ HVGIDTV+L+G++F ++ GDEV AGD+LL+FD+E+I GY Sbjct: 535 TKHAIGITSDNGTEIFIHVGIDTVQLKGEHFTSFIEQGDEVAAGDVLLEFDVERITAAGY 594 Query: 582 DPVTIAIVTNKDKYA-VEVAELKQVNRQDTLMVV 614 D +T ++TN +++ V+ + ++V +D L+ V Sbjct: 595 DVITPVLITNAKQFSNVQTTDKREVTSEDLLIHV 628 >ref|NP_784629.1| beta-glucosides PTS, EIIBCA [Lactobacillus plantarum WCFS1] emb|CAD63474.1| beta-glucosides PTS, EIIBCA [Lactobacillus plantarum WCFS1] Length = 620 Score = 381 bits (978), Expect = e-104, Method: Compositional matrix adjust. Identities = 227/619 (36%), Positives = 347/619 (56%), Gaps = 17/619 (2%) Query: 1 MNYKQTAEEILKHVGGKGNISYFEHCSTRLRFSLIDNTKADVKRLESIPGVI-AVKMAGQ 59 M YK+ ++I+ VGGK NI HC+TRLRF L D KAD + SIPG++ VK AGQ Sbjct: 1 MTYKEMNDQIINGVGGKSNIESVVHCATRLRFVLKDEAKADDDLVRSIPGILQVVKKAGQ 60 Query: 60 CQVVIGNEVVEVYDAVNQLLGXXXXXXXXXXXXXXXXXXXXXXGSVILDFIVGVFQPLIP 119 Q+VIGN V +VY+ ++ +L I+ I G P IP Sbjct: 61 YQLVIGNNVEDVYNELSDMLQLDENVDHNQSKDKRSIFDK------IISTITGSIAPAIP 114 Query: 120 AIAGAGMVKSXXXXXXXMNVLDPNGQTYKILFQIGDAALYFLPLLVAVTTANKLKVSTXX 179 +AGAGM K +L QTY++L I D +F+P + + A K + Sbjct: 115 LLAGAGMGKVLLLILTLSGLLTEKSQTYQMLNLIFDTGYFFMPAFIGFSAAKIFKTNQFL 174 Query: 180 XXXXXXXXXXPNMTAMLGEG--AQLFGLQIKSISYAYQVFPAILTVLLYAQMEKWFTRIS 237 PN AM+ G G+ I+ +SY+ + AIL+V L + +EK+ +I+ Sbjct: 175 GAFMGLVTVNPNWVAMVAAGKPVSFIGVPIQLVSYSSTLITAILSVWLMSYIEKFVKKIT 234 Query: 238 PKVIRTFFVPMMSLLITVPVSLLFLGPLGYMLGEGFSAIILTLFDKVGWIXXXXXXXXXX 297 P +I+ F PM+ +LIT P++ + LGP+ ++ G ++I + L+D G+I Sbjct: 235 PGMIKVFAEPMLIMLITAPLTFIVLGPIANLISMGIASISMFLYDNAGFIAIPLLAAAYP 294 Query: 298 XMVSIGMHKALVPYALTAMGSTGKELLYLPASLAHNIAESGACFAVAVRTKDKALKATAI 357 +VSIG+HKAL P ++ + + G + + +L N++++ A AV ++TK+K L+A A+ Sbjct: 295 WLVSIGIHKALSPISIQLVATQGFDPIIRVVALCSNMSQAAASLAVGLKTKNKQLRALAL 354 Query: 358 SAGISA-LFGITEPALYGVALQNKKVLASVMFSSLVGGAFIGIVGLQAYVLVGPGIASLS 416 S+ ++A L GITEPA++GV L+ KK + M V G F G + ++A++ V PG+ SL Sbjct: 355 SSTVTAYLGGITEPAMFGVNLKLKKPMYGAMIGGAVAGLFAGFMKMKAFIYVTPGLLSLP 414 Query: 417 MFISEDLPRNIINAVIALVISFVVAFVSTFILGKDNKAKEE----EQQLANPLTAVKE-F 471 M++S+ ++ AV +VI+ V F++T+++G ++ EE +Q AN + K Sbjct: 415 MWVSKT-ENYVVLAVATIVIASVATFIATWLIGFEDPVSEEVMKQKQAQANKVVTTKHSI 473 Query: 472 KSPVIGEVIPLSEVKDEVFSSKAMGEGIAVIPAKGELYAPVDGKIEVVYNRNHAIAMSTA 531 SPV+GE L+EV DE F+S MG+GIAVIP +G + AP DG V++ +HAI + Sbjct: 474 NSPVVGEARMLNEVNDETFASGVMGKGIAVIPTEGVVIAPTDGVASAVFDTSHAIGLHLD 533 Query: 532 NGMELLFHVGIDTVRLRGKYFEPQVKAGDEVKAGDLLLKFDLEKIIEEGYDPVTIAIVTN 591 N +LL HVGIDTV L+G+YFE VK G+ AG LL+FDL+KI + GYDP + IV N Sbjct: 534 NDADLLIHVGIDTVELKGQYFETLVKKGERFHAGQELLRFDLDKIKQAGYDPTVMIIVLN 593 Query: 592 KDKYAVEVAELKQVNRQDT 610 + +EV + + N T Sbjct: 594 TKDF-LEVLPVPESNESVT 611 >ref|NP_268836.1| beta-glucoside permease IIABC component [Streptococcus pyogenes] gb|AAK33557.1| beta-glucoside permease IIABC component [Streptococcus pyogenes M1 GAS] Length = 620 Score = 379 bits (972), Expect = e-103, Method: Compositional matrix adjust. Identities = 230/630 (36%), Positives = 348/630 (55%), Gaps = 27/630 (4%) Query: 1 MNYKQTAEEILKHVGGKGNISYFEHCSTRLRFSLIDNTKADVKRLESIPGVIAV-KMAGQ 59 M Y++TA+ IL VGGK NI HC TRLR L ++ K +++++I VI V + GQ Sbjct: 1 MTYQETAKAILAAVGGKTNIQRVTHCVTRLRLVLKNDEKVKDQQVKAISNVIGVMRKNGQ 60 Query: 60 CQVVIGNEVVEVYDAVNQLLGXXXXXXXXXXXXXXXXXXXXXXGSVI---LDFIVGVFQP 116 Q+++GN+V Y A L GS++ ++ I GV P Sbjct: 61 YQIILGNDVNNYYQAFLSL---------GHFDNQDEDHSSKAKGSILERLIETIAGVITP 111 Query: 117 LIPAIAGAGMVKSXXXXXXXMNVLDPNGQTYKILFQIGDAALYFLPLLVAVTTANKLKVS 176 LIPA+ G GM+K + + + QT + GDAA YF+P+++A + A + KV+ Sbjct: 112 LIPALLGGGMLKVVGILLPMLGLASADSQTVAFINFFGDAAYYFMPVMIAYSAAARFKVT 171 Query: 177 TXXXXXXXXXXXXPNMTAMLGEGA--QLFGLQIKSISYAYQVFPAILTVLLYAQMEKWFT 234 P AM+ EG LFG + SY V P ++ V L +EKW Sbjct: 172 PVLAATIAGILLHPAFVAMVAEGKPLTLFGAPVTPASYGSSVIPILMMVYLMQYIEKWVN 231 Query: 235 RISPKVIRTFFVPMMSLLITVPVSLLFLGPLGYMLGEGFSAIILTLFDKVGWIXXXXXXX 294 R+ P V+++F P + +LI+ ++L+ +GPLG ++G+G S +L ++ W+ Sbjct: 232 RLVPSVMKSFLQPTLIILISGFLALVVVGPLGVIIGQGLSNTMLAIYHVAPWLALAILGA 291 Query: 295 XXXXMVSIGMHKALVPYALTAMGSTGKELLYLPASLAHNIAESGACFAVAVRTKDKALKA 354 +V GMH A P L A +T ++L LPA LA N+A+ A AVA +TK K + Sbjct: 292 IMPLVVMTGMHWAFAPIFLAASVAT-PDVLILPAMLASNLAQGAASLAVAFKTKQKQTRQ 350 Query: 355 TAISAGISALF-GITEPALYGVALQNKKVLASVMFSSLVGGAFIGIVGLQAYVLVGPGIA 413 A++AGISAL GITEPALYGV L+ KK L + M S + GAFIG V + +Y V P I Sbjct: 351 VALAAGISALLAGITEPALYGVTLKFKKPLYAAMISGGLVGAFIGFVNIASYTFVVPSII 410 Query: 414 SLSMFISEDLPRNIINAVIALVISFVVAFVSTFILGKDNKAKEE------EQQLANPLTA 467 L +I+ N NA+IA + V+AF T+ +G D ++ ++ Q+ + L+ Sbjct: 411 GLPQYINPSGGANFTNALIAGTATIVLAFSLTWFMGIDEESPKQVSVAADMSQVKSGLST 470 Query: 468 VKEFKSPVIGEVIPLSEVKDEVFSSKAMGEGIAVIPAKGELYAPVDGKIEVVYNRNHAIA 527 + +P+ GE++ LSEV DE FSSK +GEG A++P++GE+YAP DG++ + HA+A Sbjct: 471 KQTLYAPMTGEMLFLSEVPDETFSSKLLGEGFAILPSEGEVYAPFDGEVITFFPTKHAVA 530 Query: 528 MSTANGMELLFHVGIDTVRLRGKYFEPQVKAGDEVKAGDLLLKFDLEKIIEEGYDPVTIA 587 + G+E+L HVGIDTV L+G+ FE V GD VK G LLK D++ I +GY ++ Sbjct: 531 LKNTRGVEVLIHVGIDTVELKGQGFEQLVSVGDVVKRGQALLKMDIDFITSKGYSLISPV 590 Query: 588 IVTNKDKYAVEV---AELKQVNRQDTLMVV 614 +VTN + +E+ + K V ++D L+V+ Sbjct: 591 VVTNSAE-QLEIIIQDDKKMVTKEDALLVI 619 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.321 0.138 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 757,223,824 Number of extensions: 28670172 Number of successful extensions: 82940 Number of sequences better than 1.0e-05: 395 Number of HSP's gapped: 82113 Number of HSP's successfully gapped: 437 Length of query: 619 Length of database: 757,237,578 Length adjustment: 132 Effective length of query: 487 Effective length of database: 398,844,510 Effective search space: 194237276370 Effective search space used: 194237276370 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)