BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0412.0004.p (282 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_244761.1| ABC transporter (ATP-binding protein) [Bacillus... 304 2e-81 ref|NP_981701.1| ABC transporter, ATP-binding protein [Bacillus ... 286 3e-76 ref|NP_834948.1| Bacitracin transport ATP-binding protein bcrA [... 283 3e-75 ref|NP_691399.1| ABC transporter ATP-binding protein [Oceanobaci... 280 3e-74 ref|NP_847685.1| ABC transporter, ATP-binding protein [Bacillus ... 279 4e-74 >ref|NP_244761.1| ABC transporter (ATP-binding protein) [Bacillus halodurans] pir||E84136 ABC transporter (ATP-binding protein) BH3893 [imported] - Bacillus halodurans (strain C-125) dbj|BAB07612.1| ABC transporter (ATP-binding protein) [Bacillus halodurans] Length = 282 Score = 304 bits (778), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 146/281 (51%), Positives = 199/281 (70%) Query: 1 LEHAIEAVGMRKAFGDKTVIKNLSFKVKQGEIFGFLGPSGSGKTTTIKMLTGELAPTDGN 60 +EH IE +RK F K +K++SF +K+GE FGFLGPSG+GKTTTIK+LTG++ DG Sbjct: 1 MEHVIEVKHLRKTFDGKEALKDVSFSIKRGETFGFLGPSGAGKTTTIKILTGQVRSFDGE 60 Query: 61 LEVLGMEPAKFGTADFKSEIGILSDNSSLYERLTVYDNLKLFGKLYGAPLNRIEVILREV 120 + + G + F S+IG+L+DNS LYERLTV DNL ++ KLY P RI +L EV Sbjct: 61 VALFGKPVHRLKRKTFMSQIGVLTDNSGLYERLTVQDNLSMYCKLYSVPERRIHDVLAEV 120 Query: 121 QLQDELAKTVSKLSRGMKQRVLLAKALIHKPKLLFLDEPTSALDPGNMAHIHRGLKKLNE 180 L+DE AK VSKLS+GMKQRV+LA+A++HKP LLFLDEPTSALDP + IH L++LN Sbjct: 121 GLRDERAKIVSKLSKGMKQRVILARAMLHKPDLLFLDEPTSALDPASSHMIHDSLRRLNR 180 Query: 181 AGTTIFLTTHNMEEATALCDRVAFLHHGELQDLDNPAALRYKYSTHAFHIETFAGQRLVI 240 GTTIFLTTH+M EA +CDRVAFL G+++ +D P LR Y+ + G+R ++ Sbjct: 181 EGTTIFLTTHDMLEAEKICDRVAFLDQGKIRVMDTPEQLRLTYADSTITLLLKGGRREIV 240 Query: 241 ENEPEKADQVSDLIARGQVKAMHTDNPTLGQIFLKVTGNEL 281 EN + A+ +S ++ G++ ++H++ PTLG +FL+VTG EL Sbjct: 241 ENNLDGANTISQVMKNGELLSIHSNEPTLGDVFLRVTGKEL 281 >ref|NP_981701.1| ABC transporter, ATP-binding protein [Bacillus cereus ATCC 10987] gb|AAS44309.1| ABC transporter, ATP-binding protein [Bacillus cereus ATCC 10987] Length = 280 Score = 286 bits (733), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 143/278 (51%), Positives = 198/278 (71%), Gaps = 1/278 (0%) Query: 4 AIEAVGMRKAFGDKTVIKNLSFKVKQGEIFGFLGPSGSGKTTTIKMLTGELAPTDGNLEV 63 AIE + K+F +KT ++N++ +VKQGEIFGFLGPSGSGKTTT+K+LT +L + G ++V Sbjct: 4 AIEMKDVMKSFNEKTALRNVNIEVKQGEIFGFLGPSGSGKTTTVKILTSQLLHSVGTVKV 63 Query: 64 LGMEPAKFGTADFKSEIGILSDNSSLYERLTVYDNLKLFGKLYGAPLNRIEVILREVQLQ 123 LG + + D+K IGIL+DNS LYERL++YDNL LF LY RI+ +L +V L Sbjct: 64 LGKDITGPSSIDYK-RIGILTDNSGLYERLSIYDNLLLFCDLYDCKKERIDEVLAQVNLL 122 Query: 124 DELAKTVSKLSRGMKQRVLLAKALIHKPKLLFLDEPTSALDPGNMAHIHRGLKKLNEAGT 183 D+ V KLS+GMKQRV LA+A++HKP +LFLDEPTSALDP N+ +IH+ LK LN+ GT Sbjct: 123 DDKKTLVKKLSKGMKQRVTLARAILHKPDILFLDEPTSALDPVNVQNIHKVLKDLNKEGT 182 Query: 184 TIFLTTHNMEEATALCDRVAFLHHGELQDLDNPAALRYKYSTHAFHIETFAGQRLVIENE 243 TIFLTTHNMEEA LC+R+AFL GE+ LD P LR +Y+ + Q+ V++ + Sbjct: 183 TIFLTTHNMEEAETLCNRIAFLCGGEIVALDTPENLRLQYAKDQIQVVLKDKQKEVVQKD 242 Query: 244 PEKADQVSDLIARGQVKAMHTDNPTLGQIFLKVTGNEL 281 A ++S+ + +G++ ++H+ PTLG IF++VTG L Sbjct: 243 ELGAKRISEWMKKGELLSIHSHEPTLGDIFIEVTGRGL 280 >ref|NP_834948.1| Bacitracin transport ATP-binding protein bcrA [Bacillus cereus ATCC 14579] gb|AAP12149.1| Bacitracin transport ATP-binding protein bcrA [Bacillus cereus ATCC 14579] Length = 280 Score = 283 bits (724), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 142/278 (51%), Positives = 196/278 (70%), Gaps = 1/278 (0%) Query: 4 AIEAVGMRKAFGDKTVIKNLSFKVKQGEIFGFLGPSGSGKTTTIKMLTGELAPTDGNLEV 63 AIE + K+F KT ++N++ +VKQGEIFGFLGPSGSGKTTT+K+LT +L + G + V Sbjct: 4 AIEMKDVMKSFSGKTALRNVNIEVKQGEIFGFLGPSGSGKTTTVKILTSQLLHSVGTVRV 63 Query: 64 LGMEPAKFGTADFKSEIGILSDNSSLYERLTVYDNLKLFGKLYGAPLNRIEVILREVQLQ 123 LG + + D+K IGIL+DNS LYERL++YDNL LF LY RI+ +L +V L Sbjct: 64 LGKDITGPSSIDYK-RIGILTDNSGLYERLSIYDNLLLFCDLYDCKKERIDEVLTQVNLL 122 Query: 124 DELAKTVSKLSRGMKQRVLLAKALIHKPKLLFLDEPTSALDPGNMAHIHRGLKKLNEAGT 183 D+ V KLS+GMKQRV LA+A++HKP +LFLDEPTSALDP N+ +IH+ LK LNE GT Sbjct: 123 DDKKTPVKKLSKGMKQRVTLARAILHKPDILFLDEPTSALDPVNVQNIHKILKDLNEEGT 182 Query: 184 TIFLTTHNMEEATALCDRVAFLHHGELQDLDNPAALRYKYSTHAFHIETFAGQRLVIENE 243 TIFLTTHNM+EA LC+R+AFL GE+ LD P LR +Y+ + ++ V++ + Sbjct: 183 TIFLTTHNMDEAETLCNRIAFLCGGEIVALDTPENLRLQYAKDQIEVVLKGKRKEVVQKD 242 Query: 244 PEKADQVSDLIARGQVKAMHTDNPTLGQIFLKVTGNEL 281 A ++S+ + +G++ ++H+ PTLG IF++VTG L Sbjct: 243 ELGAKRISEWMNKGELLSIHSHEPTLGDIFIEVTGRGL 280 >ref|NP_691399.1| ABC transporter ATP-binding protein [Oceanobacillus iheyensis HTE831] dbj|BAC12434.1| ABC transporter ATP-binding protein [Oceanobacillus iheyensis HTE831] Length = 282 Score = 280 bits (716), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 137/278 (49%), Positives = 191/278 (68%) Query: 4 AIEAVGMRKAFGDKTVIKNLSFKVKQGEIFGFLGPSGSGKTTTIKMLTGELAPTDGNLEV 63 IE + K + +K + +++F+V++GE FGFLGPSGSGKTTTIK+LTG+L T G +V Sbjct: 4 VIEVSHLEKVYQNKQALNDVTFQVEKGETFGFLGPSGSGKTTTIKILTGQLTHTSGIAKV 63 Query: 64 LGMEPAKFGTADFKSEIGILSDNSSLYERLTVYDNLKLFGKLYGAPLNRIEVILREVQLQ 123 G+ + + + G+++DNS LY RLT+YDNLK + +LY NRI +L V+LQ Sbjct: 64 FGVPVQQLKSPAQRKRFGVVTDNSGLYNRLTIYDNLKTYAQLYDVQENRINEVLEMVRLQ 123 Query: 124 DELAKTVSKLSRGMKQRVLLAKALIHKPKLLFLDEPTSALDPGNMAHIHRGLKKLNEAGT 183 +E + V+KLS+GM QRVLLA+AL+H P++LFLDEPTSALDP N HIH GLK+LN+ GT Sbjct: 124 NEAKQQVAKLSKGMTQRVLLARALLHNPEILFLDEPTSALDPVNSKHIHEGLKELNKQGT 183 Query: 184 TIFLTTHNMEEATALCDRVAFLHHGELQDLDNPAALRYKYSTHAFHIETFAGQRLVIENE 243 T+FLTTH+MEEA LC RVAFL+ G +Q LD+P L+ +Y +E G+ L + Sbjct: 184 TVFLTTHDMEEADHLCHRVAFLNKGSVQLLDSPKNLKKQYREEKVLLELRDGRELELPLA 243 Query: 244 PEKADQVSDLIARGQVKAMHTDNPTLGQIFLKVTGNEL 281 P A+ + I+ +++ + T PTLG IF++VTG EL Sbjct: 244 PSIANDIQRYISEDRIETIRTKEPTLGDIFVEVTGREL 281 >ref|NP_847685.1| ABC transporter, ATP-binding protein [Bacillus anthracis str. Ames] gb|AAP29171.1| ABC transporter, ATP-binding protein [Bacillus anthracis str. Ames] Length = 280 Score = 279 bits (714), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 139/278 (50%), Positives = 195/278 (70%), Gaps = 1/278 (0%) Query: 4 AIEAVGMRKAFGDKTVIKNLSFKVKQGEIFGFLGPSGSGKTTTIKMLTGELAPTDGNLEV 63 AIE + K+F +KT ++N++ +VKQGEIFGFLGPSGSGKTTT+K+LT +L + G + V Sbjct: 4 AIEMKDVMKSFNEKTALRNVNIEVKQGEIFGFLGPSGSGKTTTVKILTSQLLHSVGTVRV 63 Query: 64 LGMEPAKFGTADFKSEIGILSDNSSLYERLTVYDNLKLFGKLYGAPLNRIEVILREVQLQ 123 LG + + D+K IGIL+DNS LYERL++YDNL LF LY RI+ +L +V L Sbjct: 64 LGKDITGPSSIDYK-RIGILTDNSGLYERLSIYDNLLLFCDLYDCKKERIDEVLAQVNLL 122 Query: 124 DELAKTVSKLSRGMKQRVLLAKALIHKPKLLFLDEPTSALDPGNMAHIHRGLKKLNEAGT 183 ++ V KLS+GMKQRV LA+A++HKP +LFLDEPTSALDP N+ +IH+ LK LN GT Sbjct: 123 EDKKTLVKKLSKGMKQRVTLARAILHKPDILFLDEPTSALDPVNVQNIHKILKDLNREGT 182 Query: 184 TIFLTTHNMEEATALCDRVAFLHHGELQDLDNPAALRYKYSTHAFHIETFAGQRLVIENE 243 TIFLTTHNM+EA LC+R+AFL GE+ LD P LR +Y+ + ++ ++ + Sbjct: 183 TIFLTTHNMDEAETLCNRIAFLCSGEIVALDTPENLRLQYAKDQIQVVLKDKKKETVQKD 242 Query: 244 PEKADQVSDLIARGQVKAMHTDNPTLGQIFLKVTGNEL 281 A ++S+ + +G++ ++H+ PTLG IF++VTG L Sbjct: 243 ELGAKRISEWMKKGELLSIHSYEPTLGDIFIEVTGRGL 280 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.317 0.136 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 405,642,863 Number of extensions: 16360681 Number of successful extensions: 122874 Number of sequences better than 1.0e-05: 21081 Number of HSP's gapped: 95585 Number of HSP's successfully gapped: 22686 Length of query: 282 Length of database: 757,237,578 Length adjustment: 124 Effective length of query: 158 Effective length of database: 420,565,302 Effective search space: 66449317716 Effective search space used: 66449317716 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 125 (52.8 bits)