BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0411.0005.p (291 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00098944.1| COG3708: Uncharacterized protein conserved in... 164 2e-39 ref|NP_977538.1| transcriptional regulator, AraC family [Bacillu... 124 2e-27 ref|NP_655023.1| HTH_ARAC, helix_turn_helix, arabinose operon co... 124 4e-27 ref|NP_830901.1| Transcriptional regulator, AraC family [Bacillu... 122 7e-27 ref|NP_244373.1| transcriptional regulator (AraC/XylS family) [B... 109 8e-23 >ref|ZP_00098944.1| COG3708: Uncharacterized protein conserved in bacteria [Desulfitobacterium hafniense] Length = 291 Score = 164 bits (416), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 97/254 (38%), Positives = 142/254 (55%), Gaps = 13/254 (5%) Query: 47 FQAIMGETIGSYIRTRRLTQAAWDLVHSEKKILDIGVSLYFETAESFTRAFKDRYGMTPT 106 F AI+GE+IGSYI+ RRL AA ++++ +KI+DI + FE+ E+F+RAFK Y ++P Sbjct: 42 FTAILGESIGSYIKKRRLADAAKKILYTNRKIIDIAMENGFESPEAFSRAFKAIYKVSPQ 101 Query: 107 EYRKNGIDVLIGN--RPPAQISDNIVHPYADLSPQIVTVPETYTMGIRFITTISRNESIA 164 YR+N +D I R + + D++ + P+IV +PE G+R TT+ N Sbjct: 102 TYRQNRLDTFIAGKERLDSGLLDHLARN-VTVHPKIVELPEIKVAGLRGETTLRDNRLRE 160 Query: 165 MWQLFNQ---QIPDTFAGTR-YGIFEAGETCAADVFNPQSETTAF---VGIEFPKEQPIL 217 +W N QIP+ R +GI EA CA + ++ F GIE + Sbjct: 161 LWDRANSLYIQIPNRIPNGRAFGICEA---CAENTLYTMNDDILFTEVAGIEVSSFAGLT 217 Query: 218 RGMERKTIRGGKYARFIHKGIVKDLMQTYHYIWGVWFPKSGYELDNRDDFECYTERFAGE 277 +K I GG+YA F H+G + L QT+ YIWG WF + E+D R+DFE Y ERF G Sbjct: 218 EPFVQKIIPGGRYAVFTHRGTLGMLPQTFDYIWGTWFLTTKEEMDWREDFELYDERFLGY 277 Query: 278 NIESSEIDIYFPIK 291 + SE+D+Y PI+ Sbjct: 278 DHPDSEVDLYIPIR 291 >ref|NP_977538.1| transcriptional regulator, AraC family [Bacillus cereus ATCC 10987] gb|AAS40146.1| transcriptional regulator, AraC family [Bacillus cereus ATCC 10987] Length = 300 Score = 124 bits (312), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 79/258 (30%), Positives = 134/258 (51%), Gaps = 15/258 (5%) Query: 47 FQAIMGETIGSYIRTRRLTQAAWDLVHSEKKILDIGVSLYFETAESFTRAFKDRYGMTPT 106 FQA++G+T+ Y+R RRL +AA+ L H+++KI+DI F++ E+FTRAFK + MTP+ Sbjct: 43 FQALVGDTVMEYVRKRRLARAAYQLSHTDEKIIDIAFEHGFQSHETFTRAFKKLFQMTPS 102 Query: 107 EYRKNGIDVLIGNRPPAQISDNIVHPYA---DLSPQIVTVPETYTMGIRFITTISRNESI 163 EYRK I+ + + + ++PY + +IV PE G TT ++ Sbjct: 103 EYRKQEIETPMYS--SVNVKQRKLNPYLGGIQMEYRIVNKPEFLVAGYELKTTSKEGKNH 160 Query: 164 ----AMWQLFNQQIPDTFAGTRYGIFEAGETCAADVFNPQS-ETTAFVGIEFPKEQPILR 218 A WQ + Q+ T R + E FN ++ + T +G+E + + Sbjct: 161 QDIPAFWQEYLQKDLGTTIPNRKDTSQWVELGLCTDFNLETGDFTYIIGMEVTDFENVPD 220 Query: 219 GMERKTIRGGKYARFI-----HKGIVKDLMQTYHYIWGVWFPKSGYELDNRDDFECYTER 273 G+ ++T YA F H+ +V + QT++ ++ WFP SGYE +FE Y ER Sbjct: 221 GIAKRTFPSATYAVFTTPKVPHEEMVSSIHQTWNAVFSEWFPHSGYEHCGVTEFELYDER 280 Query: 274 FAGENIESSEIDIYFPIK 291 + E ++++++ P+K Sbjct: 281 CHEDKSEFAQVELWIPVK 298 >ref|NP_655023.1| HTH_ARAC, helix_turn_helix, arabinose operon control protein [Bacillus anthracis A2012] ref|NP_843601.1| transcriptional regulator, AraC family [Bacillus anthracis str. Ames] gb|AAP25087.1| transcriptional regulator, AraC family [Bacillus anthracis str. Ames] Length = 300 Score = 124 bits (310), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 82/262 (31%), Positives = 135/262 (51%), Gaps = 23/262 (8%) Query: 47 FQAIMGETIGSYIRTRRLTQAAWDLVHSEKKILDIGVSLYFETAESFTRAFKDRYGMTPT 106 FQA++G+T+ Y+R RRL +AA+ L H+++KI+DI F++ E+FTRAFK + MTP+ Sbjct: 43 FQALVGDTVMEYVRKRRLARAAYQLSHTDEKIIDIAFEHGFQSHETFTRAFKKLFQMTPS 102 Query: 107 EYRKNGIDVLIGNRPPAQISDNI----VHPYA---DLSPQIVTVPETYTMGIRFITTISR 159 EYRK I+ P S N+ ++PY + +IV PE G TT Sbjct: 103 EYRKQEIET------PMYYSVNVKQRKLNPYLGGIQMEYRIVNKPEFLMAGYELKTTSKE 156 Query: 160 NESI----AMWQLFNQQIPDTFAGTRYGIFEAGETCAADVFNPQS-ETTAFVGIEFPKEQ 214 ++ A WQ + Q+ T R + E FN ++ + T +G+E + Sbjct: 157 GKNHQDIPAFWQEYLQKDLGTTIPNRKDTSQWVELGLCTDFNLETGDFTYIIGMEVTDFE 216 Query: 215 PILRGMERKTIRGGKYARFI-----HKGIVKDLMQTYHYIWGVWFPKSGYELDNRDDFEC 269 + + ++T YA F H+ +V + QT++ ++ WFP SGYE ++FE Sbjct: 217 NVPNEIAKRTFPAATYAVFTTPKVPHEEMVSSIHQTWNAVFSEWFPHSGYEHCGVNEFEL 276 Query: 270 YTERFAGENIESSEIDIYFPIK 291 Y ER + E ++I+++ P+K Sbjct: 277 YDERSHADKSEFAQIELWIPVK 298 >ref|NP_830901.1| Transcriptional regulator, AraC family [Bacillus cereus ATCC 14579] gb|AAP08102.1| Transcriptional regulator, AraC family [Bacillus cereus ATCC 14579] Length = 300 Score = 122 bits (307), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 78/258 (30%), Positives = 133/258 (51%), Gaps = 15/258 (5%) Query: 47 FQAIMGETIGSYIRTRRLTQAAWDLVHSEKKILDIGVSLYFETAESFTRAFKDRYGMTPT 106 FQA++G+T+ Y+R RRL +AA+ L H+++K++DI F++ E+FTRAFK + MTP+ Sbjct: 43 FQALVGDTVMEYVRKRRLARAAYQLSHTDEKVIDIAFEHGFQSHETFTRAFKKLFQMTPS 102 Query: 107 EYRKNGIDVLIGNRPPAQISDNIVHPYA---DLSPQIVTVPETYTMGIRFITTISRNESI 163 EYRK I+ + R + ++PY + +IV PE G TT ++ Sbjct: 103 EYRKQEIETPMYYR--VNVKQRKLNPYLGGIQMEYRIVNKPEFLVAGYELKTTSKEGKNH 160 Query: 164 ----AMWQLFNQQIPDTFAGTRYGIFEAGETCAADVFNPQS-ETTAFVGIEFPKEQPILR 218 A WQ + Q+ T R + E FN ++ + T +G+E + + Sbjct: 161 QDIPAFWQEYLQKDLGTTIPNRKDTSQWVELGLCTDFNLETGDFTYIIGMEVTDFENVPN 220 Query: 219 GMERKTIRGGKYARFI-----HKGIVKDLMQTYHYIWGVWFPKSGYELDNRDDFECYTER 273 + ++T YA F H+ +V + QT++ ++ WFP SGYE +FE Y ER Sbjct: 221 EITKRTFPAATYAVFTTPKVPHEEMVSSIHQTWNAVFSEWFPHSGYEHCGVTEFELYDER 280 Query: 274 FAGENIESSEIDIYFPIK 291 + E ++++++ P+K Sbjct: 281 CHEDKSEFAQVELWIPVK 298 >ref|NP_244373.1| transcriptional regulator (AraC/XylS family) [Bacillus halodurans] pir||B84088 transcription regulator (AraC/XylS family) BH3506 [imported] - Bacillus halodurans (strain C-125) dbj|BAB07225.1| transcriptional regulator (AraC/XylS family) [Bacillus halodurans] Length = 297 Score = 109 bits (272), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 83/256 (32%), Positives = 128/256 (50%), Gaps = 17/256 (6%) Query: 47 FQAIMGETIGSYIRTRRLTQAAWDLVHSEKKILDIGVSLYFETAESFTRAFKDRYGMTPT 106 FQAI+GE++ YIR RRLT AA L ++++K++ I + + F+ ESF RAFK YG++P Sbjct: 42 FQAIVGESVMDYIRKRRLTCAAERLFYTDEKVITIAIEVGFQYQESFNRAFKKIYGVSPR 101 Query: 107 EYRKNGIDVLIGNRPPAQISDNIVHPYADLSPQIVTVPETYTMGIRFITTIS---RNESI 163 +YR N + R A + + + P+ VT P + +G T + N+ I Sbjct: 102 QYR-NAKRISGPLRGKACLDKKLWLGGHKMEPKFVTKPAFHIIGYELKTKNADGQNNKDI 160 Query: 164 -AMWQLF-NQQIPDTFAGTRYGIFEAGETCAADVFNPQS-ETTAFVGIEFPKEQPILRGM 220 WQ + ++ T + E G C FNP++ E +G+E K GM Sbjct: 161 PEFWQHYLKNKLGCTIPNPLHKHVELG-ICTE--FNPETGEFVYVIGMEVEKGTKAPEGM 217 Query: 221 ERKTIRGGKYARFI-----HKGIVKDLMQTYHYIWGVWFPKSGYELDNRDDFECYTERFA 275 K+ +YA F + + T++YI+ WFP+S YE + +FE Y ER Sbjct: 218 VYKSFPELEYAVFTTPKANEESFTSSIQSTWNYIFTEWFPQSDYEHNGVVEFELYDERCH 277 Query: 276 GENIESSEIDIYFPIK 291 G E+ E+DIY P+K Sbjct: 278 G--TENIEMDIYIPVK 291 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.322 0.139 0.425 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 390,367,926 Number of extensions: 18329430 Number of successful extensions: 31580 Number of sequences better than 1.0e-05: 78 Number of HSP's gapped: 31590 Number of HSP's successfully gapped: 78 Length of query: 291 Length of database: 757,237,578 Length adjustment: 124 Effective length of query: 167 Effective length of database: 420,565,302 Effective search space: 70234405434 Effective search space used: 70234405434 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 125 (52.8 bits)