BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0411.0003.p (327 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00098945.1| COG4927: Predicted choloylglycine hydrolase [... 252 1e-65 ref|NP_978775.1| conserved domain protein [Bacillus cereus ATCC ... 229 7e-59 ref|NP_832127.1| Choloylglycine hydrolase [Bacillus cereus ATCC ... 229 9e-59 ref|NP_656293.1| hypothetical protein predicted by GeneMark [Bac... 219 7e-56 ref|NP_602946.1| Hypothetical protein [Fusobacterium nucleatum s... 79 2e-13 >ref|ZP_00098945.1| COG4927: Predicted choloylglycine hydrolase [Desulfitobacterium hafniense] Length = 372 Score = 252 bits (643), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 113/277 (40%), Positives = 172/277 (62%) Query: 44 LLDRYCQGINEEIKGFADTIGVSSEQALFYTMTYLERGCSLMAVLPSKSKSGHTLMARNY 103 L DR+C G+ +E++GFAD + V E FY MTYL CS +A+LP + L+ARNY Sbjct: 54 LFDRWCPGLTDELRGFADALAVKPEGVFFYGMTYLLPRCSHIALLPGLTAERKPLLARNY 113 Query: 104 DFNNEMEEMCFAFTNIKGKYRYIGSTLNLFGRCDGMNEHGLAVCKASNGVPVGNFEGGQK 163 +F++E E+ C T++ GKY ++G+++ FGR DG NEHGLA+ +S G PVG + Sbjct: 114 EFSHEAEDFCLTKTSVTGKYTHMGTSVLHFGRDDGFNEHGLAITISSCGFPVGALPTMRA 173 Query: 164 AGATGFSFWVVVRSILENCKTVQEAIEWTMSAPIGYNMNLMLADSSNKIALLQCMDGHKS 223 G FW V+R++LENCK V E++E+ PI YN+N++L D + AL + +DG + Sbjct: 174 PKLKGLQFWAVIRALLENCKDVSESLEYLEGMPIAYNLNMILMDKAGNAALFETLDGLSA 233 Query: 224 YKLLDEYSEEAFLSVTNHAVLEDIKPYQKMIIENSVVRNNKIVEVFTGKKQLSKKDMKTL 283 K + E L VTNH VL ++K + ++ +S R + I E G+ +++K+ +K + Sbjct: 234 VKRIGPDPAEQMLYVTNHPVLPELKSMEPQVMAHSARRYDYIQEQLAGRDRITKEQLKKM 293 Query: 284 LSTSYPDGLCCHYYKEFFGTLRSMIFDVNDKTIEMTF 320 L YPDGLCCHY++EFFGT +SM+ D I++ + Sbjct: 294 LLAKYPDGLCCHYFEEFFGTTKSMVISPADGRIDLCW 330 >ref|NP_978775.1| conserved domain protein [Bacillus cereus ATCC 10987] gb|AAS41383.1| conserved domain protein [Bacillus cereus ATCC 10987] Length = 374 Score = 229 bits (584), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 119/308 (38%), Positives = 185/308 (60%), Gaps = 2/308 (0%) Query: 13 GQWVLSTPSLLKQVLLPPNAYPNDKFTKITDLLDRYCQGINEEIKGFADTIGVSSEQALF 72 G++V L+ Q + N + FT+ ++L++YC GINEEI+GF + + + S+ ++ Sbjct: 23 GEFVKQHSYLVPQFIQQENLISPNHFTESRNILNQYCSGINEEIEGFCEVLKIPSKNMMY 82 Query: 73 YTMTYLERGCSLMAVLPSKSKSGHTLMARNYDFNNEMEEMCFAFTNIKGKYRYIGSTLNL 132 Y T L+ GCS AVLP K+ S HT + RNYD + ++++M F T+++G Y + G + Sbjct: 83 YYQTLLKAGCSHCAVLPKKTDSKHTYVLRNYDLSPKIDDMRFCSTHVEGAYAHSGFSTQY 142 Query: 133 FGRCDGMNEHGLAVCKASNGVPVGNFEGGQKAGATGFSFWVVVRSILENCKTVQEAIEWT 192 FGR +G+NEHGLAV ++ G PVGN EG +K +G + V+R +LE CK VQEA Sbjct: 143 FGRTEGVNEHGLAVTFSACGQPVGNIEGLRKPAVSGLQCFAVIRLLLEKCKNVQEAKSLI 202 Query: 193 MSAPIGYNMNLMLADSSNKIALLQCMDGHKSYKLLDEYSEEAFLSVTNHAVLEDIKPYQK 252 PI N+NL++AD N A ++ DGHK +D +AF+ TNHAV I+ Sbjct: 203 EEIPIASNINLIVADPLNA-AHIEIFDGHKFTTTIDG-DNQAFIVSTNHAVSSSIQKLNN 260 Query: 253 MIIENSVVRNNKIVEVFTGKKQLSKKDMKTLLSTSYPDGLCCHYYKEFFGTLRSMIFDVN 312 +E S R + + E +Q+S + +K L+ YP GL H Y+E+FGTL S++ D++ Sbjct: 261 RRLEQSTKRYHVLHEHLNRYEQVSIESLKKLVEEEYPAGLTVHNYEEWFGTLHSVLLDLH 320 Query: 313 DKTIEMTF 320 D+T+++ F Sbjct: 321 DRTMKICF 328 >ref|NP_832127.1| Choloylglycine hydrolase [Bacillus cereus ATCC 14579] gb|AAP09328.1| Choloylglycine hydrolase [Bacillus cereus ATCC 14579] Length = 375 Score = 229 bits (583), Expect = 9e-59, Method: Compositional matrix adjust. Identities = 119/308 (38%), Positives = 187/308 (60%), Gaps = 2/308 (0%) Query: 13 GQWVLSTPSLLKQVLLPPNAYPNDKFTKITDLLDRYCQGINEEIKGFADTIGVSSEQALF 72 G++V P L+ Q + N N+ +T+ ++L+++C GINEEI+GF + + + S+ ++ Sbjct: 24 GEFVKQNPYLIPQFIHEENVISNNHWTESRNILNKHCPGINEEIEGFCEVLKIPSKNMMY 83 Query: 73 YTMTYLERGCSLMAVLPSKSKSGHTLMARNYDFNNEMEEMCFAFTNIKGKYRYIGSTLNL 132 Y T L+ GCS AVLP K+ HT + RNYD + +++M F T+++G Y + G + Sbjct: 84 YYQTLLKAGCSHCAVLPKKTDLEHTYVLRNYDLSPVIDDMRFCSTHVEGAYAHSGFSTQY 143 Query: 133 FGRCDGMNEHGLAVCKASNGVPVGNFEGGQKAGATGFSFWVVVRSILENCKTVQEAIEWT 192 FGR +G+NEHGLAV ++ G PVGN G +K +G + V+R +LE CK VQEA Sbjct: 144 FGRTEGINEHGLAVTFSACGQPVGNIAGLRKPMVSGLQCFAVIRLLLEKCKNVQEAKLLI 203 Query: 193 MSAPIGYNMNLMLADSSNKIALLQCMDGHKSYKLLDEYSEEAFLSVTNHAVLEDIKPYQK 252 PI N+NL++AD N A ++ DGHKS +D ++AF+ TNHAV I+ Sbjct: 204 EEIPIASNINLIIADPLNA-AYIEIFDGHKSTITIDG-EKQAFIVSTNHAVSSSIQKLNN 261 Query: 253 MIIENSVVRNNKIVEVFTGKKQLSKKDMKTLLSTSYPDGLCCHYYKEFFGTLRSMIFDVN 312 +E S R + + E +Q+S + +K L+ YP GL H Y+E+FGTL S++FD++ Sbjct: 262 RKLEQSTKRYHLLHEHLNRCEQVSIESLKKLVEEEYPAGLTVHNYEEWFGTLHSVLFDLH 321 Query: 313 DKTIEMTF 320 D+T+++ F Sbjct: 322 DRTMKICF 329 >ref|NP_656293.1| hypothetical protein predicted by GeneMark [Bacillus anthracis A2012] ref|NP_844813.1| conserved domain protein [Bacillus anthracis str. Ames] gb|AAP26299.1| conserved domain protein [Bacillus anthracis str. Ames] Length = 374 Score = 219 bits (558), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 116/308 (37%), Positives = 180/308 (58%), Gaps = 2/308 (0%) Query: 13 GQWVLSTPSLLKQVLLPPNAYPNDKFTKITDLLDRYCQGINEEIKGFADTIGVSSEQALF 72 G++V P L+ Q + N + +T+ ++L YC GINEEI+GF + + + SE ++ Sbjct: 23 GEFVKQHPYLIPQFIQKENLISHQHWTESRNILHNYCPGINEEIEGFCEVLKIPSENMMY 82 Query: 73 YTMTYLERGCSLMAVLPSKSKSGHTLMARNYDFNNEMEEMCFAFTNIKGKYRYIGSTLNL 132 Y T L+ GCS AVLP K+ HT + RNYD + ++EM F T ++G Y + G + Sbjct: 83 YYQTLLKAGCSHCAVLPKKTDLKHTYVLRNYDLSPVIDEMRFCSTYVEGAYAHSGFSTQY 142 Query: 133 FGRCDGMNEHGLAVCKASNGVPVGNFEGGQKAGATGFSFWVVVRSILENCKTVQEAIEWT 192 FGR +G+NEHGL+V ++ G PVGN G +K +G + V+R +LE CK VQEA Sbjct: 143 FGRTEGVNEHGLSVTFSACGQPVGNIAGLRKPAVSGLQCFAVIRVLLEKCKNVQEAKSLI 202 Query: 193 MSAPIGYNMNLMLADSSNKIALLQCMDGHKSYKLLDEYSEEAFLSVTNHAVLEDIKPYQK 252 PI NMNL++AD + + ++ DG+KS E S++ F+ TNHA+ I+ Sbjct: 203 EEIPIASNMNLIVADPLDAVC-IEIFDGYKSIITTVEESQD-FIVSTNHAISLPIQKLNS 260 Query: 253 MIIENSVVRNNKIVEVFTGKKQLSKKDMKTLLSTSYPDGLCCHYYKEFFGTLRSMIFDVN 312 +E S R + + E +Q+S + +K L+ YP GL H Y+E+FGTL S++FD++ Sbjct: 261 RRLEQSTNRYHTLYEHLNRNEQVSIESLKRLVQIEYPAGLTVHNYEEWFGTLHSVLFDLH 320 Query: 313 DKTIEMTF 320 + T+ + F Sbjct: 321 ECTMNICF 328 >ref|NP_602946.1| Hypothetical protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gb|AAL94245.1| Hypothetical protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 329 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 79/299 (26%), Positives = 138/299 (46%), Gaps = 57/299 (19%) Query: 40 KITDLLDRYCQGINEEIKGFA-----DTIGVSSEQALFYTMTYLERGCSLMAVLPSKSKS 94 ++ D+ + Y I EEIKGFA D V + Y TY + CS++A+ + Sbjct: 44 QVFDIYNEYYPEIIEEIKGFAEGQHTDFKIVFAFLVTMYVFTY-DNYCSMLAL----TNK 98 Query: 95 GHTLMARNYDFNNEMEEMCFA-FTNIKGKYRYIGSTLNLFGRCDGMNEHGLAVCKASNGV 153 + ARN DF +++++ + F + + +IG+T + DG+NE GLA C + Sbjct: 99 NCLVFARNSDFLVDIKKVSDSTFYKLNSNFSFIGNTTAMIQMEDGINEKGLA-CGLTFVY 157 Query: 154 P-VGNFEGGQKAGATGFSFWVVVRSILENCKTVQEAIEWTMSAPIGYNMNLMLADSSNKI 212 P V N+ GF+ ++R ILE C+T ++A+++ PIG + N+++ D + Sbjct: 158 PTVKNY---------GFNAGFLIRYILEKCETTEQAVDFLNKVPIGSSQNIIIIDRFRNL 208 Query: 213 ALLQCMDGHKSYKLLDEYSEEAFLSVTNHAVLEDIKPYQKMIIENSVVRNNKIVEVFTGK 272 A+ + HK+ ++ +E + TNH + + + Y K + ++ V Sbjct: 209 AVAELNSSHKTIRI----NEANVVYRTNHFIEQTMLKY-KYLGDDDV------------- 250 Query: 273 KQLSKKDMKTLLSTSYPD--------------GLCCHYYK-EFFGTLRSMIFDVNDKTI 316 S KTL S +Y + G C Y K + F T+ S +FD+ +K I Sbjct: 251 --FSHLRYKTLNSQNYTEFNLSGIFELLKGKNGFICQYDKTKKFDTIWSSVFDIKNKVI 307 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.134 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 460,284,205 Number of extensions: 18811537 Number of successful extensions: 45862 Number of sequences better than 1.0e-05: 13 Number of HSP's gapped: 45852 Number of HSP's successfully gapped: 13 Length of query: 327 Length of database: 757,237,578 Length adjustment: 126 Effective length of query: 201 Effective length of database: 415,135,104 Effective search space: 83442155904 Effective search space used: 83442155904 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 126 (53.1 bits)