BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0407.0021.p
         (112 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EAE27021.1| unknown [environmental sequence]                       144   6e-34
ref|NP_293759.1| conserved hypothetical protein [Deinococcus rad...   132   3e-30
gb|EAH51153.1| unknown [environmental sequence]                       122   3e-27
gb|EAD61640.1| unknown [environmental sequence]                       109   2e-23
gb|EAK23183.1| unknown [environmental sequence]                       109   2e-23

>gb|EAE27021.1| unknown [environmental sequence]
          Length = 112

 Score =  144 bits (363), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 69/112 (61%), Positives = 86/112 (76%), Gaps = 1/112 (0%)

Query: 1   VGYCRAIRIGDRIEVAGTTAIKDGKVFGKGSPYEQTRFILQTIEKALGELGAGLDNVVRT 60
           VGYCRA+R+G+ IEV+GT  + DGKV G+ S Y+Q    LQ IE +L + GA L+NVVRT
Sbjct: 2   VGYCRAVRMGNIIEVSGTAPVMDGKVVGE-SGYDQAIVCLQIIEASLIKAGASLENVVRT 60

Query: 61  RMFVTDISKWEEFGKAHGEFFKEIQPVATMVEVKALIDPDLLIEIEVEAAAP 112
           RMFVTDIS+WEE+G+AHGE+F EI+P  +MVEV  LIDP +LIEIE  A  P
Sbjct: 61  RMFVTDISQWEEYGRAHGEYFAEIKPATSMVEVSGLIDPKMLIEIEATAVIP 112


>ref|NP_293759.1| conserved hypothetical protein [Deinococcus radiodurans]
 pir||A75567 conserved hypothetical protein - Deinococcus radiodurans  (strain
           R1)
 gb|AAF09626.1| conserved hypothetical protein [Deinococcus radiodurans]
          Length = 157

 Score =  132 bits (332), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 64/109 (58%), Positives = 82/109 (75%)

Query: 1   VGYCRAIRIGDRIEVAGTTAIKDGKVFGKGSPYEQTRFILQTIEKALGELGAGLDNVVRT 60
           VGY RA+R+G+ ++VAGTTA  DG+V G G  Y QT+  L  I +AL + GA L++VVRT
Sbjct: 43  VGYSRAVRVGNIVQVAGTTATVDGEVVGVGDAYWQTKVALGLIRQALEQAGARLEDVVRT 102

Query: 61  RMFVTDISKWEEFGKAHGEFFKEIQPVATMVEVKALIDPDLLIEIEVEA 109
           RM+V DIS+WE+ G+AHGE F  I+P ATMV+V ALIDP  L+EIE EA
Sbjct: 103 RMYVPDISRWEQVGRAHGEVFGAIRPAATMVQVAALIDPRHLVEIEAEA 151


>gb|EAH51153.1| unknown [environmental sequence]
          Length = 130

 Score =  122 bits (305), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 61/109 (55%), Positives = 76/109 (69%), Gaps = 1/109 (0%)

Query: 2   GYCRAIRIGDRIEVAGTTAI-KDGKVFGKGSPYEQTRFILQTIEKALGELGAGLDNVVRT 60
           GY RA+RIG  IEVAGTTA+   G +   G    QT+FI + I+K L E G+ L +V+RT
Sbjct: 18  GYSRAVRIGKIIEVAGTTAVDSQGLIVSPGDAGGQTKFIFEKIDKILNEAGSKLSDVIRT 77

Query: 61  RMFVTDISKWEEFGKAHGEFFKEIQPVATMVEVKALIDPDLLIEIEVEA 109
           RMFVTDI+ WE+    HG  F EI+PV+T+VEV  LID +LLIEIEV A
Sbjct: 78  RMFVTDINDWEKIASVHGHIFNEIKPVSTLVEVSQLIDKELLIEIEVSA 126


>gb|EAD61640.1| unknown [environmental sequence]
          Length = 133

 Score =  109 bits (273), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 55/109 (50%), Positives = 76/109 (69%), Gaps = 1/109 (0%)

Query: 2   GYCRAIRIGDRIEVAGTTAIK-DGKVFGKGSPYEQTRFILQTIEKALGELGAGLDNVVRT 60
           GYCRA+R+G  IEVAGTTA+  +G  FG+G    QT+++L+ I+ A+ + G  + +VVRT
Sbjct: 18  GYCRAVRVGQFIEVAGTTAVDAEGNFFGEGDVGAQTQYVLEKIQHAIEQAGGTMSDVVRT 77

Query: 61  RMFVTDISKWEEFGKAHGEFFKEIQPVATMVEVKALIDPDLLIEIEVEA 109
           R++VTD     E  K HG+FF EI PV+T VE+ AL+D  LL+EIE  A
Sbjct: 78  RIYVTDKEYMMEVAKVHGKFFGEILPVSTGVEICALVDDRLLVEIEASA 126


>gb|EAK23183.1| unknown [environmental sequence]
          Length = 131

 Score =  109 bits (272), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 56/109 (51%), Positives = 76/109 (69%), Gaps = 1/109 (0%)

Query: 2   GYCRAIRIGDRIEVAGTTAIK-DGKVFGKGSPYEQTRFILQTIEKALGELGAGLDNVVRT 60
           GY RA+R+G  IEVAGTTA+   G  FG+G    QT+++L+ I++A+ + G  + +VVRT
Sbjct: 18  GYSRAVRVGQFIEVAGTTAVDAQGNFFGEGDVAAQTQYVLEKIQRAIEQAGGTMSDVVRT 77

Query: 61  RMFVTDISKWEEFGKAHGEFFKEIQPVATMVEVKALIDPDLLIEIEVEA 109
           R+FVTD     E  K HG+FF EI+PV+T VEV AL+D  LL+EIE  A
Sbjct: 78  RIFVTDREYMMEVAKVHGKFFGEIRPVSTGVEVGALVDDRLLVEIEASA 126


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.320    0.140    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 159,168,038
Number of extensions: 5749935
Number of successful extensions: 14576
Number of sequences better than 1.0e-05: 123
Number of HSP's gapped: 14665
Number of HSP's successfully gapped: 123
Length of query: 112
Length of database: 757,237,578
Length adjustment: 78
Effective length of query: 34
Effective length of database: 545,459,856
Effective search space: 18545635104
Effective search space used: 18545635104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 120 (50.8 bits)