BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0407.0011.p (200 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_981739.1| conserved hypothetical protein [Bacillus cereus... 206 3e-52 ref|NP_834984.1| Nitrilotriacetate monooxygenase component B [Ba... 205 4e-52 ref|NP_653780.1| Flavin_Reduct, Flavin reductase like domain [Ba... 205 4e-52 ref|NP_243144.1| BH2278~unknown conserved protein [Bacillus halo... 191 6e-48 ref|ZP_00182838.1| hypothetical protein Exigu182201 [Exiguobacte... 183 2e-45 >ref|NP_981739.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] gb|AAS44347.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] Length = 203 Score = 206 bits (523), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 107/202 (52%), Positives = 135/202 (66%), Gaps = 7/202 (3%) Query: 1 MYIAASAQSAHDNYKLLIGSIIPRPIAFVTSINEQGVVNAAPFSFFNIVNDEPPMIMFSC 60 + I + QS +NYKLL GSIIPRP+AFVTS+ + GV+N AP+S+FNIV PP+I S Sbjct: 2 LSINPNEQSEKENYKLLTGSIIPRPVAFVTSVTKDGVLNGAPYSYFNIVAANPPLISVSV 61 Query: 61 LRKATGEMKHTASNILGNGEFVVHIVDEDNVAAINHTSINAPEGVSELELAGLTPVPGQM 120 RKA GE K T+ N + GEFVVHI DE VAAIN T+ N P SE+ELA LTP+ + Sbjct: 62 QRKA-GERKDTSRNAIEKGEFVVHISDESYVAAINETAANLPPNESEIELAKLTPIESDV 120 Query: 121 VRVPRIEECRIAMECRLTRHVELG------HCDMIIGEVLCFHVEDELIHNGRIDAAKLK 174 + VP ++E I MEC L R + LG CD++IG V+ FHV + L NGRI A LK Sbjct: 121 ISVPGVKEANIRMECVLERAIPLGGTEDSPACDLLIGRVVRFHVAEHLYENGRIHAEGLK 180 Query: 175 PVSRLAGASYAAVGRTFDMERP 196 PVSRLAG +YA +G F++ RP Sbjct: 181 PVSRLAGHNYAKLGEQFELVRP 202 >ref|NP_834984.1| Nitrilotriacetate monooxygenase component B [Bacillus cereus ATCC 14579] gb|AAP12185.1| Nitrilotriacetate monooxygenase component B [Bacillus cereus ATCC 14579] Length = 203 Score = 205 bits (522), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 105/202 (51%), Positives = 136/202 (67%), Gaps = 7/202 (3%) Query: 1 MYIAASAQSAHDNYKLLIGSIIPRPIAFVTSINEQGVVNAAPFSFFNIVNDEPPMIMFSC 60 + I + Q+ DNYKLL GSIIPRP+AFVTS+ ++GV+N AP+S+FNIV PP+I S Sbjct: 2 LSINPNEQTEKDNYKLLTGSIIPRPVAFVTSVTKEGVLNGAPYSYFNIVAANPPLISVSV 61 Query: 61 LRKATGEMKHTASNILGNGEFVVHIVDEDNVAAINHTSINAPEGVSELELAGLTPVPGQM 120 RKA GE K T+ N + GEFVVHI DE VAAIN T+ N P SE+ELA LTP+ ++ Sbjct: 62 QRKA-GERKDTSRNAIEKGEFVVHISDESYVAAINETAANLPPNESEIELAKLTPIESEV 120 Query: 121 VRVPRIEECRIAMECRLTRHVELG------HCDMIIGEVLCFHVEDELIHNGRIDAAKLK 174 + VP ++E I MEC L R + LG CD++IG V+ FHV + L GRI A LK Sbjct: 121 ISVPGVKEANIRMECVLERAIPLGGTEDSPACDLLIGRVVRFHVAEHLYEKGRIHAEGLK 180 Query: 175 PVSRLAGASYAAVGRTFDMERP 196 P+SRLAG +YA +G F++ RP Sbjct: 181 PISRLAGHNYAKLGEQFELVRP 202 >ref|NP_653780.1| Flavin_Reduct, Flavin reductase like domain [Bacillus anthracis A2012] ref|NP_847722.1| conserved hypothetical protein [Bacillus anthracis str. Ames] gb|AAP29208.1| conserved hypothetical protein [Bacillus anthracis str. Ames] Length = 203 Score = 205 bits (522), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 106/202 (52%), Positives = 135/202 (66%), Gaps = 7/202 (3%) Query: 1 MYIAASAQSAHDNYKLLIGSIIPRPIAFVTSINEQGVVNAAPFSFFNIVNDEPPMIMFSC 60 + I + Q+ +NYKLL GSIIPRP+AFVTS+ + GV+N AP+S+FNIV PP+I S Sbjct: 2 LSINPNEQTEKENYKLLTGSIIPRPVAFVTSVTKDGVLNGAPYSYFNIVAANPPLISVSV 61 Query: 61 LRKATGEMKHTASNILGNGEFVVHIVDEDNVAAINHTSINAPEGVSELELAGLTPVPGQM 120 RKA GE K T+ N + GEFVVHI DE VAAIN T+ N P SE+ELA LTP+ + Sbjct: 62 QRKA-GERKDTSRNAIEKGEFVVHISDESYVAAINETAANLPSNESEIELAKLTPIESDV 120 Query: 121 VRVPRIEECRIAMECRLTRHVELG------HCDMIIGEVLCFHVEDELIHNGRIDAAKLK 174 + VP ++E I MEC L R + LG CD++IG V+ FHV + L NGRI A LK Sbjct: 121 ISVPGVKEANIRMECVLERAIPLGGTEDSPACDLLIGRVVRFHVAEHLYENGRIHAEGLK 180 Query: 175 PVSRLAGASYAAVGRTFDMERP 196 PVSRLAG +YA +G F++ RP Sbjct: 181 PVSRLAGHNYAKLGEQFELVRP 202 >ref|NP_243144.1| BH2278~unknown conserved protein [Bacillus halodurans] sp|Q9KAK9|YM78_BACHD Hypothetical protein BH2278 pir||F83934 hypothetical protein BH2278 [imported] - Bacillus halodurans (strain C-125) dbj|BAB05997.1| BH2278~unknown conserved protein [Bacillus halodurans] Length = 209 Score = 191 bits (486), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 97/202 (48%), Positives = 131/202 (64%), Gaps = 6/202 (2%) Query: 1 MYIAASAQSAHDNYKLLIGSIIPRPIAFVTSINEQGVVNAAPFSFFNIVNDEPPMIMFSC 60 M + + S +NY+LLIG+++PRPIAFVT+ ++ GVVNAAPFSF+N++ EPP+I S Sbjct: 1 MKLNPDSLSRKENYRLLIGAVLPRPIAFVTTKSKAGVVNAAPFSFYNVLTAEPPLIGISV 60 Query: 61 LRKATGEMKHTASNILGNGEFVVHIVDEDNVAAINHTSINAPEGVSELELAGLTPVPGQM 120 RK G K TA N GEFVVH+VDE NV A+N +SI P SE+E AGLT VP ++ Sbjct: 61 GRKPDGTPKDTARNGQEIGEFVVHVVDEQNVEAVNVSSIPLPPEESEVEYAGLTEVPSEV 120 Query: 121 VRVPRIEECRIAMECRLTRHVELGH------CDMIIGEVLCFHVEDELIHNGRIDAAKLK 174 V VP + E RI +EC++ + +G D +IG V+ + V D+L +G ID L+ Sbjct: 121 VSVPSLAESRIRLECKVENVIPIGGKGGEPAADFLIGRVVHYEVADDLFQDGGIDTEALR 180 Query: 175 PVSRLAGASYAAVGRTFDMERP 196 PVSRLAG Y G TF ++RP Sbjct: 181 PVSRLAGNEYGKYGETFSLDRP 202 >ref|ZP_00182838.1| hypothetical protein Exigu182201 [Exiguobacterium sp. 255-15] Length = 197 Score = 183 bits (465), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 92/196 (46%), Positives = 124/196 (63%), Gaps = 1/196 (0%) Query: 1 MYIAASAQSAHDNYKLLIGSIIPRPIAFVTSINEQGVVNAAPFSFFNIVNDEPPMIMFSC 60 M A + S +NYKLLIGSIIPRPIAFVT+ G +NAAPFSFF + + PP ++ + Sbjct: 1 MKFDARSLSPKENYKLLIGSIIPRPIAFVTTKGADGTINAAPFSFFTVASSHPPQLLIAV 60 Query: 61 LRKATGEMKHTASNILGNGEFVVHIVDEDNVAAINHTSINAPEGVSELELAGLTPVPGQM 120 + GE K TA NIL E+V+HIV E+ V A+N T+ G SELE LT + + Sbjct: 61 QKTDQGE-KDTAKNILLTKEYVIHIVSEEIVEAVNETAAPLAYGESELERTNLTLIDSDL 119 Query: 121 VRVPRIEECRIAMECRLTRHVELGHCDMIIGEVLCFHVEDELIHNGRIDAAKLKPVSRLA 180 + VP + E +I E +LT+H+EL D++IGEV+ +HV DEL + RIDA L ++RLA Sbjct: 120 INVPAVAEAKIRFELKLTQHIELETADLLIGEVIRYHVADELEESFRIDADGLNAIARLA 179 Query: 181 GASYAAVGRTFDMERP 196 G YA +G F + RP Sbjct: 180 GNDYAKIGEIFTIARP 195 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.321 0.136 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 287,701,599 Number of extensions: 11241149 Number of successful extensions: 20989 Number of sequences better than 1.0e-05: 190 Number of HSP's gapped: 20764 Number of HSP's successfully gapped: 190 Length of query: 200 Length of database: 757,237,578 Length adjustment: 119 Effective length of query: 81 Effective length of database: 434,140,797 Effective search space: 35165404557 Effective search space used: 35165404557 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 123 (52.0 bits)