BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0407.0007.p (358 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_470139.1| similar to spermidine/putrescine ABC transporte... 533 e-150 ref|NP_464334.1| similar to spermidine/putrescine ABC transporte... 529 e-149 ref|ZP_00182882.1| hypothetical protein Exigu177001 [Exiguobacte... 524 e-147 ref|NP_816290.1| spermidine/putrescine ABC transporter, ATP-bind... 522 e-147 ref|ZP_00037664.1| COG3842: ABC-type spermidine/putrescine trans... 516 e-145 >ref|NP_470139.1| similar to spermidine/putrescine ABC transporter, ATP-binding protein [Listeria innocua] pir||AE1532 spermidine/putrescine ABC transporter, ATP-binding protein homolog lin0797 [imported] - Listeria innocua (strain Clip11262) emb|CAC96029.1| lin0797 [Listeria innocua] Length = 364 Score = 533 bits (1372), Expect = e-150, Method: Compositional matrix adjust. Identities = 261/354 (73%), Positives = 294/354 (83%) Query: 1 VIKQYDDEEPVLKGVSFEIERGKFYTLLGPSGCGKTTILRLIAGFAEPTKGSIYLNGQII 60 V KQ+D++ PVL VSFEIE+GKFYTLLGPSGCGKTTILRLIAGF E ++G IYL ++I Sbjct: 11 VTKQFDNDPPVLDNVSFEIEKGKFYTLLGPSGCGKTTILRLIAGFLEASEGQIYLGDKVI 70 Query: 61 NHIPANERQVNTVFQDYALFPHLNVFENVAFGLRIKKLKKDVITHKVQEALRFVNLVGYE 120 N IPAN+R VNTVFQDYALFPHLNV+ENVAFGLRIKKLKKD I KVQEALRFVNL GYE Sbjct: 71 NQIPANKRPVNTVFQDYALFPHLNVYENVAFGLRIKKLKKDAIDKKVQEALRFVNLKGYE 130 Query: 121 QRAINEMSGGQRQRVAIARAIVNEPQVXXXXXXXXXXXXXXRTEMQYILREMQQRLGITF 180 +R I+EMSGGQRQRVAIARAIVNEP+V RTEMQY LR++Q+RLGITF Sbjct: 131 KREISEMSGGQRQRVAIARAIVNEPEVILLDEPLSALDLKLRTEMQYELRDLQKRLGITF 190 Query: 181 IFVTHDQEEALAMSDWIFVMNGGRIEQSGTPNDIYDEPINRFVADFIGESNIVPGVMIED 240 IFVTHDQEEALAMSD IFV+N G I+QSGTP DIYDEPIN+FVADFIGESNIV G MI+D Sbjct: 191 IFVTHDQEEALAMSDEIFVLNKGEIQQSGTPIDIYDEPINKFVADFIGESNIVNGKMIQD 250 Query: 241 YLVEFNGHRFECVDAGLRRNEAVEIVIRPEDLEIAALEQGKLRVRVDSQLFRGVHYEISC 300 + VEF RFECVD G R NE VE+VIRPEDLEI + E+GKL+V VD LFRGVHYE+ C Sbjct: 251 FEVEFVERRFECVDQGFRPNEVVEVVIRPEDLEITSAEKGKLQVTVDWMLFRGVHYEVGC 310 Query: 301 YDESGHEWLVHSTRKAEVGSEIGLYFDPEAIHVMRFGETEEEFDKRLEAYGEVE 354 D G+EWLVH+TRK VG +IGL F+PEAIHVMR GETEEEFDKRL++Y EV+ Sbjct: 311 IDIDGNEWLVHTTRKVRVGDKIGLAFEPEAIHVMRLGETEEEFDKRLDSYDEVQ 364 >ref|NP_464334.1| similar to spermidine/putrescine ABC transporter, ATP-binding protein [Listeria monocytogenes EGD-e] pir||AG1175 spermidine/putrescine ABC transporter, ATP-binding protein homolog lmo0807 [imported] - Listeria monocytogenes (strain EGD-e) emb|CAC98885.1| lmo0807 [Listeria monocytogenes] Length = 364 Score = 529 bits (1363), Expect = e-149, Method: Compositional matrix adjust. Identities = 259/354 (73%), Positives = 294/354 (83%) Query: 1 VIKQYDDEEPVLKGVSFEIERGKFYTLLGPSGCGKTTILRLIAGFAEPTKGSIYLNGQII 60 V KQ+D++ PVL VSFEIE+GKFYTLLGPSGCGKTTILRLIAGF E +KG IYL ++I Sbjct: 11 VTKQFDNDPPVLDNVSFEIEKGKFYTLLGPSGCGKTTILRLIAGFLEASKGQIYLGDKVI 70 Query: 61 NHIPANERQVNTVFQDYALFPHLNVFENVAFGLRIKKLKKDVITHKVQEALRFVNLVGYE 120 N IPAN+R VNTVFQDYALFPHLNV+ENVAFGLRIKKLKK+ I KV+EALRFVNL GYE Sbjct: 71 NQIPANKRPVNTVFQDYALFPHLNVYENVAFGLRIKKLKKEAIDEKVKEALRFVNLKGYE 130 Query: 121 QRAINEMSGGQRQRVAIARAIVNEPQVXXXXXXXXXXXXXXRTEMQYILREMQQRLGITF 180 +R I+EMSGGQRQRVAIARAIVNEP+V RTEMQY LR++Q+RLGITF Sbjct: 131 KREISEMSGGQRQRVAIARAIVNEPEVILLDEPLSALDLKLRTEMQYELRDLQKRLGITF 190 Query: 181 IFVTHDQEEALAMSDWIFVMNGGRIEQSGTPNDIYDEPINRFVADFIGESNIVPGVMIED 240 IFVTHDQEEALAMSD IFV+N G I+QSGTP DIYDEPIN+FVADFIGESNIV G MI+D Sbjct: 191 IFVTHDQEEALAMSDEIFVLNKGEIQQSGTPIDIYDEPINKFVADFIGESNIVNGKMIQD 250 Query: 241 YLVEFNGHRFECVDAGLRRNEAVEIVIRPEDLEIAALEQGKLRVRVDSQLFRGVHYEISC 300 + VEF RFECVD G R NE VE+VIRPEDLEI + E+G+L+V VD LFRGVHYE+ C Sbjct: 251 FEVEFVERRFECVDQGFRPNEVVEVVIRPEDLEITSAEKGQLQVTVDWMLFRGVHYEVGC 310 Query: 301 YDESGHEWLVHSTRKAEVGSEIGLYFDPEAIHVMRFGETEEEFDKRLEAYGEVE 354 D G+EWLVH+TRK VG +IGL F+PEAIHVMR GETEEEFDKRL++Y EV+ Sbjct: 311 IDIDGNEWLVHTTRKVRVGDKIGLAFEPEAIHVMRLGETEEEFDKRLDSYDEVQ 364 >ref|ZP_00182882.1| hypothetical protein Exigu177001 [Exiguobacterium sp. 255-15] Length = 353 Score = 524 bits (1350), Expect = e-147, Method: Compositional matrix adjust. Identities = 259/353 (73%), Positives = 289/353 (81%), Gaps = 1/353 (0%) Query: 1 VIKQYDDEEPVLKGVSFEIERGKFYTLLGPSGCGKTTILRLIAGFAEPTKGSIYLNGQII 60 + K++DD+ VL+ VSFEIERGKFYTLLGPSGCGKTT+LRLIAGF E T+G I NG+ I Sbjct: 1 MTKRFDDQ-TVLERVSFEIERGKFYTLLGPSGCGKTTVLRLIAGFTEATEGDILFNGKRI 59 Query: 61 NHIPANERQVNTVFQDYALFPHLNVFENVAFGLRIKKLKKDVITHKVQEALRFVNLVGYE 120 N +PAN+RQVNTVFQDYALFPHLNVFEN+AFGLRIKK+K I +V +AL+FVNL GYE Sbjct: 60 NDVPANKRQVNTVFQDYALFPHLNVFENIAFGLRIKKMKDAEIKTRVLDALKFVNLSGYE 119 Query: 121 QRAINEMSGGQRQRVAIARAIVNEPQVXXXXXXXXXXXXXXRTEMQYILREMQQRLGITF 180 R I EMSGGQRQRVAIARAIVNEP+V RTEMQY LR++Q+RLGITF Sbjct: 120 NREITEMSGGQRQRVAIARAIVNEPEVILLDEPLSALDLKLRTEMQYELRDLQRRLGITF 179 Query: 181 IFVTHDQEEALAMSDWIFVMNGGRIEQSGTPNDIYDEPINRFVADFIGESNIVPGVMIED 240 IFVTHDQEEALAMSD IFV+N G I+QSGTP DIYDEPINRFVADFIGESNI+PG M+ D Sbjct: 180 IFVTHDQEEALAMSDEIFVLNHGLIQQSGTPTDIYDEPINRFVADFIGESNIIPGRMLMD 239 Query: 241 YLVEFNGHRFECVDAGLRRNEAVEIVIRPEDLEIAALEQGKLRVRVDSQLFRGVHYEISC 300 Y V F FECVD GL NE VEIVIRPEDLEI ++ QGKLRV VDSQLFRGVHYEI+C Sbjct: 240 YRVSFAEKEFECVDRGLELNEPVEIVIRPEDLEITSVAQGKLRVTVDSQLFRGVHYEIAC 299 Query: 301 YDESGHEWLVHSTRKAEVGSEIGLYFDPEAIHVMRFGETEEEFDKRLEAYGEV 353 DE G+EWLVHST+KA VG +IGL FDPEAIHVMR ETEEEFDKRLE+Y V Sbjct: 300 MDEVGNEWLVHSTKKATVGEQIGLTFDPEAIHVMRLNETEEEFDKRLESYDGV 352 >ref|NP_816290.1| spermidine/putrescine ABC transporter, ATP-binding subunit [Enterococcus faecalis V583] gb|AAO82360.1| spermidine/putrescine ABC transporter, ATP-binding subunit [Enterococcus faecalis V583] Length = 361 Score = 522 bits (1345), Expect = e-147, Method: Compositional matrix adjust. Identities = 253/352 (71%), Positives = 290/352 (82%), Gaps = 1/352 (0%) Query: 1 VIKQYDDEEPVLKGVSFEIERGKFYTLLGPSGCGKTTILRLIAGFAEPTKGSIYLNGQII 60 V+KQ+DDE PVLK VSFEIE GKFYTLLGPSGCGKTTILR+IAGF + T G +Y +G+ I Sbjct: 11 VVKQFDDE-PVLKNVSFEIEEGKFYTLLGPSGCGKTTILRIIAGFNDVTSGDVYFDGKRI 69 Query: 61 NHIPANERQVNTVFQDYALFPHLNVFENVAFGLRIKKLKKDVITHKVQEALRFVNLVGYE 120 N +PAN+RQVNTVFQDYALFPH+NVF+NVAFGL+IKKL K I KV+EALR V L GYE Sbjct: 70 NDVPANKRQVNTVFQDYALFPHMNVFDNVAFGLKIKKLSKAEIEKKVKEALRLVQLPGYE 129 Query: 121 QRAINEMSGGQRQRVAIARAIVNEPQVXXXXXXXXXXXXXXRTEMQYILREMQQRLGITF 180 R I+EMSGGQRQRVAIARAIVNEP+V RT MQY LR++QQRLGITF Sbjct: 130 TREISEMSGGQRQRVAIARAIVNEPKVLLLDEPLSALDLKLRTAMQYELRDLQQRLGITF 189 Query: 181 IFVTHDQEEALAMSDWIFVMNGGRIEQSGTPNDIYDEPINRFVADFIGESNIVPGVMIED 240 IFVTHDQEEALAMSD IFVMN G I QSGTP DIYDEPIN FVADF+GESNIV GVM+ED Sbjct: 190 IFVTHDQEEALAMSDEIFVMNKGHIVQSGTPVDIYDEPINHFVADFVGESNIVDGVMLED 249 Query: 241 YLVEFNGHRFECVDAGLRRNEAVEIVIRPEDLEIAALEQGKLRVRVDSQLFRGVHYEISC 300 LV F G +FECVD G+R+NE VE+V+RPEDL I LE+GKL V VD+QLFRGVHYEI C Sbjct: 250 NLVSFVGKKFECVDGGMRKNEPVEVVLRPEDLTITTLEKGKLTVTVDTQLFRGVHYEIIC 309 Query: 301 YDESGHEWLVHSTRKAEVGSEIGLYFDPEAIHVMRFGETEEEFDKRLEAYGE 352 +DE G+EW+VHSTRKA+ G+++GL F+PE IHVMRF E+EE+FD RLE+Y E Sbjct: 310 FDEQGNEWMVHSTRKAKEGAQVGLSFEPEDIHVMRFNESEEDFDARLESYDE 361 >ref|ZP_00037664.1| COG3842: ABC-type spermidine/putrescine transport systems, ATPase components [Enterococcus faecium] Length = 361 Score = 516 bits (1328), Expect = e-145, Method: Compositional matrix adjust. Identities = 251/352 (71%), Positives = 291/352 (82%), Gaps = 1/352 (0%) Query: 1 VIKQYDDEEPVLKGVSFEIERGKFYTLLGPSGCGKTTILRLIAGFAEPTKGSIYLNGQII 60 V+K+YDDE VLK VSFEIE+GKFYTLLGPSGCGKTTILR+IAGF E T+G IY G+ + Sbjct: 11 VVKRYDDE-TVLKKVSFEIEQGKFYTLLGPSGCGKTTILRIIAGFTEATEGDIYFEGKRL 69 Query: 61 NHIPANERQVNTVFQDYALFPHLNVFENVAFGLRIKKLKKDVITHKVQEALRFVNLVGYE 120 N +PAN+RQVNTVFQDYALFPH+NVF+NVAFGL+IKK+ K I KV++ALR V L GYE Sbjct: 70 NDLPANKRQVNTVFQDYALFPHMNVFDNVAFGLKIKKMSKSDIEKKVKDALRMVQLPGYE 129 Query: 121 QRAINEMSGGQRQRVAIARAIVNEPQVXXXXXXXXXXXXXXRTEMQYILREMQQRLGITF 180 +R I+EMSGGQRQRVAIARAIVNEP+V RT+MQY LR++QQRLGITF Sbjct: 130 KREISEMSGGQRQRVAIARAIVNEPKVLLLDEPLSALDLKLRTDMQYELRDLQQRLGITF 189 Query: 181 IFVTHDQEEALAMSDWIFVMNGGRIEQSGTPNDIYDEPINRFVADFIGESNIVPGVMIED 240 IFVTHDQEEALAMSD IFVMN G+I QSGTP DIYDEPIN FVADF+GESNIV GVMIED Sbjct: 190 IFVTHDQEEALAMSDEIFVMNKGKIVQSGTPVDIYDEPINHFVADFVGESNIVDGVMIED 249 Query: 241 YLVEFNGHRFECVDAGLRRNEAVEIVIRPEDLEIAALEQGKLRVRVDSQLFRGVHYEISC 300 LVEF G +FECVD G+R NE VE+V+RPEDL I ++GKL V VD+QLFRGVHYEI C Sbjct: 250 NLVEFVGKQFECVDGGMRLNEPVEVVLRPEDLTITTPDKGKLVVTVDTQLFRGVHYEIIC 309 Query: 301 YDESGHEWLVHSTRKAEVGSEIGLYFDPEAIHVMRFGETEEEFDKRLEAYGE 352 YDE +EW+VHST+KA+ GS++GL F+PE IHVMRF E+EEEFD RL++Y E Sbjct: 310 YDEQQNEWMVHSTKKAKEGSKVGLAFEPEDIHVMRFNESEEEFDARLDSYEE 361 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.321 0.139 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 514,153,295 Number of extensions: 21090595 Number of successful extensions: 118797 Number of sequences better than 1.0e-05: 19267 Number of HSP's gapped: 96255 Number of HSP's successfully gapped: 20225 Length of query: 358 Length of database: 757,237,578 Length adjustment: 127 Effective length of query: 231 Effective length of database: 412,420,005 Effective search space: 95269021155 Effective search space used: 95269021155 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 126 (53.1 bits)