BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0407.0004.p (357 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00182885.1| hypothetical protein Exigu177301 [Exiguobacte... 518 e-146 ref|NP_470142.1| similar to spermidine/putrescine-binding protei... 504 e-141 ref|NP_464337.1| similar to spermidine/putrescine-binding protei... 500 e-140 ref|NP_694079.1| spermidine:putrescine ABC transporter [Oceanoba... 489 e-137 ref|NP_816287.1| spermidine/putrescine ABC transporter, spermidi... 434 e-120 >ref|ZP_00182885.1| hypothetical protein Exigu177301 [Exiguobacterium sp. 255-15] Length = 357 Score = 518 bits (1335), Expect = e-146, Method: Compositional matrix adjust. Identities = 243/357 (68%), Positives = 296/357 (82%) Query: 1 MKQLVNAFLAILIVAFGLMFLASRLNSAEGYSGGNTLTIYNWGDYIEPELLKQFEKETGI 60 MK+L+ F+AI +++ ++F +RLN+ +GYSG N L IYNWGDYI+PEL+ QFEKE+GI Sbjct: 1 MKKLIQLFVAIFLISGIILFALNRLNTTQGYSGKNVLNIYNWGDYIDPELIDQFEKESGI 60 Query: 61 TVIYQTFDSNEAMLTKVEQGGTTFDVVVPSDYAIAKMREENLLLPLDKSKIPNLANIDSR 120 V+YQTFDSNEAMLTK+EQGGTT+D+ VPSDYAIAKM EE+L+LP+D+ KIPNL NID R Sbjct: 61 KVVYQTFDSNEAMLTKIEQGGTTYDIAVPSDYAIAKMIEEDLVLPIDQQKIPNLKNIDPR 120 Query: 121 FMDLSFDPGNVYSVPYFWGTVGIIFNPDMTKGMDFSSWDSLWDNRLKNNIFLVDGAREVM 180 F+DLSFDPGN YS+PYFWGTVGI++N + G +SW +WD LKN I L DGAREVM Sbjct: 121 FLDLSFDPGNKYSIPYFWGTVGIVYNQKLIDGKKPTSWKDIWDPALKNQILLADGAREVM 180 Query: 181 GMALNSLHYSVNDQNEEHLQEALAKLNRLSPNVKAIVGDEIKMLLANEEAAVGIVWSGDA 240 GM+LNSL YS+N+ +E LQEA A L L+PNVKAIVGDEIK+LLANEEA +G+VWSGDA Sbjct: 181 GMSLNSLGYSLNETDETKLQEAKANLMDLTPNVKAIVGDEIKLLLANEEAGIGVVWSGDA 240 Query: 241 SEIMDENDKLDYVVPKEGSNKWFDNMVVPRTAVNVEGAHKFIDFMLRPDVAAKNAEYVGY 300 +EIM EN+ L+YV+PKEGSN WFDN+V+P+TA NV+GAH+FI+FML P AAKNA+YVGY Sbjct: 241 NEIMSENENLNYVIPKEGSNVWFDNVVIPKTAKNVKGAHEFINFMLDPKNAAKNADYVGY 300 Query: 301 STPNVPALKLLPEEISGDTRFYPPAEITDRLEVYDNLGKRMLAHYNELFLRFKMNKK 357 STPN ALKLL ++ D RFYP E+TD LEVY+NLGK MLAHYNELFL FKM+KK Sbjct: 301 STPNKAALKLLDRDVREDKRFYPDKEVTDTLEVYENLGKEMLAHYNELFLEFKMHKK 357 >ref|NP_470142.1| similar to spermidine/putrescine-binding protein [Listeria innocua] pir||AH1532 spermidine/putrescine-binding protein homolog lin0800 [imported] - Listeria innocua (strain Clip11262) emb|CAC96032.1| lin0800 [Listeria innocua] Length = 357 Score = 504 bits (1297), Expect = e-141, Method: Compositional matrix adjust. Identities = 234/357 (65%), Positives = 297/357 (83%) Query: 1 MKQLVNAFLAILIVAFGLMFLASRLNSAEGYSGGNTLTIYNWGDYIEPELLKQFEKETGI 60 MKQL+ F+ +++VA +M LA+ +N +EGY+G NTLTIYNWGDYI+P L+ +FEKETGI Sbjct: 1 MKQLLKIFVPVIVVALLMMLLATTMNRSEGYAGSNTLTIYNWGDYIDPSLITKFEKETGI 60 Query: 61 TVIYQTFDSNEAMLTKVEQGGTTFDVVVPSDYAIAKMREENLLLPLDKSKIPNLANIDSR 120 VIYQTFDSNEAM+TK+EQGGTTFD+ VPSDYAI+KM+EENLL+PLD SK+PN +D R Sbjct: 61 KVIYQTFDSNEAMMTKIEQGGTTFDIAVPSDYAISKMKEENLLIPLDHSKLPNEKYLDPR 120 Query: 121 FMDLSFDPGNVYSVPYFWGTVGIIFNPDMTKGMDFSSWDSLWDNRLKNNIFLVDGAREVM 180 FMDLSFD N YS+PYFWGT+GII+N +M +F +W++L+D LKN I L+DGAREVM Sbjct: 121 FMDLSFDDDNKYSMPYFWGTLGIIYNKEMFPDKNFDTWNALFDPELKNQILLIDGAREVM 180 Query: 181 GMALNSLHYSVNDQNEEHLQEALAKLNRLSPNVKAIVGDEIKMLLANEEAAVGIVWSGDA 240 G+ LNSL YS+ND N+ HLQ A KL ++PNVKAIVGDEIK+L+A+ EA V + +SG+A Sbjct: 181 GLGLNSLGYSLNDTNKSHLQAARDKLETMTPNVKAIVGDEIKLLMADNEAGVAVTFSGEA 240 Query: 241 SEIMDENDKLDYVVPKEGSNKWFDNMVVPRTAVNVEGAHKFIDFMLRPDVAAKNAEYVGY 300 +E++ EN+ L+YV+PK+GSN WFDNMV+P+TA NV+GAHKFI+FML+P+ AA NAEYVGY Sbjct: 241 AEMLSENEDLEYVIPKDGSNLWFDNMVIPKTAKNVDGAHKFINFMLKPENAAINAEYVGY 300 Query: 301 STPNVPALKLLPEEISGDTRFYPPAEITDRLEVYDNLGKRMLAHYNELFLRFKMNKK 357 +TPN A+KLLP+EISGD RFYP + + LEVYDNLGKRML++YNELFL FKM +K Sbjct: 301 ATPNEKAVKLLPKEISGDERFYPDMDELNNLEVYDNLGKRMLSYYNELFLEFKMYRK 357 >ref|NP_464337.1| similar to spermidine/putrescine-binding protein [Listeria monocytogenes EGD-e] pir||AB1176 spermidine/putrescine-binding protein homolog lmo0810 [imported] - Listeria monocytogenes (strain EGD-e) emb|CAC98888.1| lmo0810 [Listeria monocytogenes] Length = 357 Score = 500 bits (1288), Expect = e-140, Method: Compositional matrix adjust. Identities = 232/357 (64%), Positives = 296/357 (82%) Query: 1 MKQLVNAFLAILIVAFGLMFLASRLNSAEGYSGGNTLTIYNWGDYIEPELLKQFEKETGI 60 MKQL+ F+ +++VA +M LA+ +N +EGY+G NTLTIYNWGDYI+P L+ +FEKETGI Sbjct: 1 MKQLLKIFVPVIVVALLMMLLATTMNRSEGYAGSNTLTIYNWGDYIDPSLITKFEKETGI 60 Query: 61 TVIYQTFDSNEAMLTKVEQGGTTFDVVVPSDYAIAKMREENLLLPLDKSKIPNLANIDSR 120 VIYQTFDSNEAM+TK+EQGGTTFD+ VPSDYAI+KM+EENLL+PLD SK+PN +D R Sbjct: 61 KVIYQTFDSNEAMMTKIEQGGTTFDIAVPSDYAISKMKEENLLIPLDHSKLPNEKYLDPR 120 Query: 121 FMDLSFDPGNVYSVPYFWGTVGIIFNPDMTKGMDFSSWDSLWDNRLKNNIFLVDGAREVM 180 FMDLSFD N YS+PYFWGT+GII+N +M +F +W++L+D LKN I L+DGAREVM Sbjct: 121 FMDLSFDDDNKYSMPYFWGTLGIIYNKEMFPDKNFDTWNALFDPELKNQILLIDGAREVM 180 Query: 181 GMALNSLHYSVNDQNEEHLQEALAKLNRLSPNVKAIVGDEIKMLLANEEAAVGIVWSGDA 240 G+ LNSL YS+ND N+ HLQ A KL ++PNVKAIVGDEIK+L+A+ EA V + +SG+A Sbjct: 181 GLGLNSLGYSLNDTNKAHLQAARDKLETMTPNVKAIVGDEIKLLMADNEAGVAVTFSGEA 240 Query: 241 SEIMDENDKLDYVVPKEGSNKWFDNMVVPRTAVNVEGAHKFIDFMLRPDVAAKNAEYVGY 300 +E++ EN+ L+YV+PK+GSN WFDNMV+P+TA NV+GAHKFI+FML+P+ AA NAEYVGY Sbjct: 241 AEMLSENEDLEYVIPKDGSNLWFDNMVIPKTAKNVDGAHKFINFMLKPENAAINAEYVGY 300 Query: 301 STPNVPALKLLPEEISGDTRFYPPAEITDRLEVYDNLGKRMLAHYNELFLRFKMNKK 357 +TPN A++LLP+EIS D RFYP + + LEVYDNLGKRML++YNELFL FKM +K Sbjct: 301 ATPNAKAVELLPKEISSDERFYPDMDELNNLEVYDNLGKRMLSYYNELFLEFKMYRK 357 >ref|NP_694079.1| spermidine:putrescine ABC transporter [Oceanobacillus iheyensis HTE831] dbj|BAC15113.1| spermidine:putrescine ABC transporter spermidine:putrescine-binding protein [Oceanobacillus iheyensis HTE831] Length = 358 Score = 489 bits (1259), Expect = e-137, Method: Compositional matrix adjust. Identities = 226/358 (63%), Positives = 292/358 (81%), Gaps = 1/358 (0%) Query: 1 MKQLVNAFLAILIVAFGLMFLASRLNSAEGYSGGNTLTIYNWGDYIEPELLKQFEKETGI 60 MK ++ + AILIV+ L+ + +RLN+A+G+SG NTLT+YNWGDYI+ EL+ FE+ETGI Sbjct: 1 MKSIMRSLSAILIVSIVLLIMINRLNAAQGFSGDNTLTVYNWGDYIDEELITLFEEETGI 60 Query: 61 TVIYQTFDSNEAMLTKVEQGGTTFDVVVPSDYAIAKMREENLLLPLDKSKIPNLANIDSR 120 T++Y+TFDSNEAM+TK++QGGTT+DV VPS+Y + KM EE+LL+ LD SK+PNL+NID R Sbjct: 61 TIVYETFDSNEAMMTKIQQGGTTYDVAVPSEYMVQKMVEEDLLIELDHSKLPNLSNIDER 120 Query: 121 FMDLSFDPGNVYSVPYFWGTVGIIFNPDMT-KGMDFSSWDSLWDNRLKNNIFLVDGAREV 179 FMDL FDP N YS+PYFWGTVGIIFN ++ +GM+ + W LWD L+N I L+DGARE+ Sbjct: 121 FMDLPFDPNNQYSIPYFWGTVGIIFNTNLLPEGMELTGWHDLWDPALENQILLIDGAREI 180 Query: 180 MGMALNSLHYSVNDQNEEHLQEALAKLNRLSPNVKAIVGDEIKMLLANEEAAVGIVWSGD 239 +GM LNSL YS+ND N EHL +AL KL L+PNV+AIVGDE KML+AN EA + I WSGD Sbjct: 181 IGMGLNSLGYSLNDTNPEHLYQALEKLEELTPNVRAIVGDENKMLMANNEATIAIGWSGD 240 Query: 240 ASEIMDENDKLDYVVPKEGSNKWFDNMVVPRTAVNVEGAHKFIDFMLRPDVAAKNAEYVG 299 A++IM EN+ +DY+VP+EGSN WFDN V+P+TA N++GAH+FI+FML ++AA+N EYV Sbjct: 241 AADIMGENEAIDYLVPEEGSNLWFDNFVIPKTARNIDGAHQFINFMLDAEIAAQNTEYVS 300 Query: 300 YSTPNVPALKLLPEEISGDTRFYPPAEITDRLEVYDNLGKRMLAHYNELFLRFKMNKK 357 YSTPN AL+ +PEE+ D RFYP E+TDRLEVY+NLG+R LA YNELFL+FKM +K Sbjct: 301 YSTPNKEALQFMPEEMVEDERFYPDPELTDRLEVYENLGQRNLAFYNELFLQFKMYRK 358 >ref|NP_816287.1| spermidine/putrescine ABC transporter, spermidine/putrescine-binding protein [Enterococcus faecalis V583] gb|AAO82357.1| spermidine/putrescine ABC transporter, spermidine/putrescine-binding protein [Enterococcus faecalis V583] Length = 357 Score = 434 bits (1115), Expect = e-120, Method: Compositional matrix adjust. Identities = 204/357 (57%), Positives = 270/357 (75%) Query: 1 MKQLVNAFLAILIVAFGLMFLASRLNSAEGYSGGNTLTIYNWGDYIEPELLKQFEKETGI 60 MK+L + F+ I+ + L F +L A G +G +TLTIYNWGDYI+P L+K+FEKETG Sbjct: 1 MKKLQSLFIGIIAIIVILFFGVRQLEKASGMAGADTLTIYNWGDYIDPALIKKFEKETGY 60 Query: 61 TVIYQTFDSNEAMLTKVEQGGTTFDVVVPSDYAIAKMREENLLLPLDKSKIPNLANIDSR 120 V Y+TFDSNEAM TK++QGGT +D+ +PS+Y I KM + +LLPLD SK+ L NID+R Sbjct: 61 KVNYETFDSNEAMYTKIQQGGTAYDIAIPSEYMIQKMMKAKMLLPLDHSKLKGLENIDAR 120 Query: 121 FMDLSFDPGNVYSVPYFWGTVGIIFNPDMTKGMDFSSWDSLWDNRLKNNIFLVDGAREVM 180 F+D SFDP N +SVPYFWGT+GII+N G WD LW LKNN+ L+DGAREV+ Sbjct: 121 FLDQSFDPKNKFSVPYFWGTLGIIYNDKFIDGRQIQHWDDLWRPELKNNVMLIDGAREVL 180 Query: 181 GMALNSLHYSVNDQNEEHLQEALAKLNRLSPNVKAIVGDEIKMLLANEEAAVGIVWSGDA 240 G++LNSL YS+N +N++ L++A KLNRL+ NVKAIV DEIKM +ANEE+AV + +SG+A Sbjct: 181 GLSLNSLGYSLNSKNDQQLRQATDKLNRLTNNVKAIVADEIKMYMANEESAVAVTFSGEA 240 Query: 241 SEIMDENDKLDYVVPKEGSNKWFDNMVVPRTAVNVEGAHKFIDFMLRPDVAAKNAEYVGY 300 +E+++ N+ L YV+P EGSN WFDN+V+P+TA N EGA+ F++FMLRP+ AA+NAEY+GY Sbjct: 241 AEMLENNEHLHYVIPSEGSNLWFDNIVMPKTAKNKEGAYAFMNFMLRPENAAQNAEYIGY 300 Query: 301 STPNVPALKLLPEEISGDTRFYPPAEITDRLEVYDNLGKRMLAHYNELFLRFKMNKK 357 STPN A KLLP+E++ D +FYP E LEVY +LG+ L YN+LFL FKM +K Sbjct: 301 STPNKEAKKLLPKEVAEDKQFYPDDETIKHLEVYQDLGQEYLGIYNDLFLEFKMYRK 357 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.136 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 557,505,758 Number of extensions: 24372708 Number of successful extensions: 68592 Number of sequences better than 1.0e-05: 405 Number of HSP's gapped: 67987 Number of HSP's successfully gapped: 405 Length of query: 357 Length of database: 757,237,578 Length adjustment: 127 Effective length of query: 230 Effective length of database: 412,420,005 Effective search space: 94856601150 Effective search space used: 94856601150 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 126 (53.1 bits)