BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0405.0004.p (297 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_833323.1| ABC transporter ATP-binding protein [Bacillus c... 363 2e-99 gb|AAM19250.1| ATP-binding protein [Bacillus thuringiensis serov... 362 7e-99 ref|NP_979907.1| ABC transporter, ATP-binding protein [Bacillus ... 360 2e-98 ref|NP_845918.1| ABC transporter, ATP-binding protein [Bacillus ... 356 5e-97 ref|NP_657502.1| ABC_tran, ABC transporter [Bacillus anthracis A... 350 2e-95 >ref|NP_833323.1| ABC transporter ATP-binding protein [Bacillus cereus ATCC 14579] gb|AAP10524.1| ABC transporter ATP-binding protein [Bacillus cereus ATCC 14579] Length = 297 Score = 363 bits (933), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 170/297 (57%), Positives = 218/297 (73%) Query: 1 MLKVEGLSKRFSNGRGIDNVSFTVHQGEVFGFLGPNGAGKSTTIRHIMGFMQPDRGSVTI 60 M+ V+ ++K+FSNG+G+ +++F V +GEVFG+LGPNGAGKSTTIR++MGF++P G TI Sbjct: 1 MISVQDVTKQFSNGKGLFHITFDVKEGEVFGYLGPNGAGKSTTIRNLMGFIKPTAGKATI 60 Query: 61 GGLDAWKGQGTVQKLTGYLPGEINFIDGMTGTSFLNFMTSMQGMKDTSKRDRLIQRLQFD 120 GLD W +Q+ GYLPGEI+FI+GM G FL M M+G+KDT +RD LI+RLQFD Sbjct: 61 FGLDCWNEAAKIQREVGYLPGEISFIEGMNGLEFLKLMQGMRGLKDTKRRDELIERLQFD 120 Query: 121 AATPIRKMSKGMKQKVGIVAAFMHSPKLIILDEPTSGLDPLMQRVFIELVLEEKAAGTTF 180 TPIRKMSKGMKQKVGIVAAFMH P+++ILDEPTSGLDPLMQ+VFI+L+LEEK G T Sbjct: 121 VKTPIRKMSKGMKQKVGIVAAFMHDPEVLILDEPTSGLDPLMQQVFIDLILEEKQRGKTI 180 Query: 181 LMSSHSFQEIERTCDRAAIIKDGRIVTVKNIHELQSMQRKLFXXXXXXXXXXXXXXXSGL 240 LMSSH F EIERTCDR AIIKDGR+VTV+NIH+LQSM+R++ L Sbjct: 181 LMSSHIFTEIERTCDRVAIIKDGRLVTVENIHDLQSMRRQVIDVTVSSQEEIESLTKCNL 240 Query: 241 QVESHEGNRVRIAIQGDYAAFTQELAHYAVRSIDISTQNLEDIFMNYYDRDREVTAE 297 Q E+ +G I +QG+Y Q L++Y V ++ +LE +FM+YYD+ VT E Sbjct: 241 QFEAVKGREASIIVQGNYQTVLQTLSNYNVTALQTRAMDLEHLFMHYYDKKEGVTHE 297 >gb|AAM19250.1| ATP-binding protein [Bacillus thuringiensis serovar thuringiensis] Length = 297 Score = 362 bits (928), Expect = 7e-99, Method: Compositional matrix adjust. Identities = 169/297 (56%), Positives = 217/297 (73%) Query: 1 MLKVEGLSKRFSNGRGIDNVSFTVHQGEVFGFLGPNGAGKSTTIRHIMGFMQPDRGSVTI 60 M+ V+ ++K+FSNG+G+ +++F V +GEVFG+LGPNGAGKSTTIR++MGF++P G TI Sbjct: 1 MISVQDVTKQFSNGKGLFHITFDVKEGEVFGYLGPNGAGKSTTIRNLMGFIKPTAGKATI 60 Query: 61 GGLDAWKGQGTVQKLTGYLPGEINFIDGMTGTSFLNFMTSMQGMKDTSKRDRLIQRLQFD 120 GLD W +Q+ GYLPGEI+FI+GM G FL M M+G+KDT +RD LI+RLQFD Sbjct: 61 FGLDCWNEAAKIQREVGYLPGEISFIEGMNGLEFLKLMQGMRGLKDTKRRDELIERLQFD 120 Query: 121 AATPIRKMSKGMKQKVGIVAAFMHSPKLIILDEPTSGLDPLMQRVFIELVLEEKAAGTTF 180 TPIRKMSKGMKQKVGIVAAFMH P+++ILDEPTSGLDPLMQ+VFI+L+LEEK G T Sbjct: 121 VKTPIRKMSKGMKQKVGIVAAFMHDPEVLILDEPTSGLDPLMQQVFIDLILEEKQRGKTI 180 Query: 181 LMSSHSFQEIERTCDRAAIIKDGRIVTVKNIHELQSMQRKLFXXXXXXXXXXXXXXXSGL 240 LMSSH F EIERTCDR AIIKDGR+VTV+NIH+LQSM+R++ L Sbjct: 181 LMSSHIFTEIERTCDRVAIIKDGRLVTVENIHDLQSMRRQVIDVTVSSQEEIESLIKCNL 240 Query: 241 QVESHEGNRVRIAIQGDYAAFTQELAHYAVRSIDISTQNLEDIFMNYYDRDREVTAE 297 Q E+ +G I +QG+Y Q L++Y V ++ +LE +FM+YYD+ V E Sbjct: 241 QFEAVKGREASIIVQGNYQTVLQTLSNYNVTALQTRAMDLEHLFMHYYDKKEGVAHE 297 >ref|NP_979907.1| ABC transporter, ATP-binding protein [Bacillus cereus ATCC 10987] gb|AAS42515.1| ABC transporter, ATP-binding protein [Bacillus cereus ATCC 10987] Length = 297 Score = 360 bits (925), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 168/297 (56%), Positives = 217/297 (73%) Query: 1 MLKVEGLSKRFSNGRGIDNVSFTVHQGEVFGFLGPNGAGKSTTIRHIMGFMQPDRGSVTI 60 M+ V+ ++K+FSNG+G+ +++F V +GEVFG+LGPNGAGKSTTIR++MGF++P G TI Sbjct: 1 MISVQNVTKKFSNGKGLFHITFEVKEGEVFGYLGPNGAGKSTTIRNLMGFIKPTDGKATI 60 Query: 61 GGLDAWKGQGTVQKLTGYLPGEINFIDGMTGTSFLNFMTSMQGMKDTSKRDRLIQRLQFD 120 GLD W +Q+ GYLPGEI+FI+GM G FL M M+G+KDT +RD LI+RLQFD Sbjct: 61 FGLDCWNEAAKIQREVGYLPGEISFIEGMNGLEFLKLMQGMRGLKDTKRRDELIERLQFD 120 Query: 121 AATPIRKMSKGMKQKVGIVAAFMHSPKLIILDEPTSGLDPLMQRVFIELVLEEKAAGTTF 180 TPIRKMSKGMKQKVGIVAAFMH P+++ILDEPTSGLDPLMQ+VFI+L++EEK G T Sbjct: 121 VKTPIRKMSKGMKQKVGIVAAFMHDPEVLILDEPTSGLDPLMQQVFIDLIVEEKQRGKTI 180 Query: 181 LMSSHSFQEIERTCDRAAIIKDGRIVTVKNIHELQSMQRKLFXXXXXXXXXXXXXXXSGL 240 LMSSH F EIERTCDR AIIKDGR+VTV+NIH+LQSM+R++ L Sbjct: 181 LMSSHIFTEIERTCDRVAIIKDGRLVTVENIHDLQSMRRQVIDVTVSSEEEIASLAQCNL 240 Query: 241 QVESHEGNRVRIAIQGDYAAFTQELAHYAVRSIDISTQNLEDIFMNYYDRDREVTAE 297 Q E+ +G I +QG+Y Q L++Y V ++ +LE +FM+YYD+ V E Sbjct: 241 QFEAVKGRAASIIVQGNYQTVLQILSNYNVTALQTRAMDLEHLFMHYYDKKEGVKHE 297 >ref|NP_845918.1| ABC transporter, ATP-binding protein [Bacillus anthracis str. Ames] gb|AAP27404.1| ABC transporter, ATP-binding protein [Bacillus anthracis str. Ames] Length = 297 Score = 356 bits (913), Expect = 5e-97, Method: Compositional matrix adjust. Identities = 166/297 (55%), Positives = 216/297 (72%) Query: 1 MLKVEGLSKRFSNGRGIDNVSFTVHQGEVFGFLGPNGAGKSTTIRHIMGFMQPDRGSVTI 60 M+ V+ ++K+FSNG+G+ +++F V +GEVFG+LGPNGAGKSTTIR++MGF++P G +I Sbjct: 1 MISVQNVTKQFSNGKGLFHITFDVKEGEVFGYLGPNGAGKSTTIRNLMGFIKPTSGKSSI 60 Query: 61 GGLDAWKGQGTVQKLTGYLPGEINFIDGMTGTSFLNFMTSMQGMKDTSKRDRLIQRLQFD 120 GLD W +Q+ GYLPGEI+FI+GM G FL M M+G+KDT +RD LI+RLQFD Sbjct: 61 FGLDCWNEAAKIQREVGYLPGEISFIEGMNGLEFLKLMQGMRGLKDTKRRDELIERLQFD 120 Query: 121 AATPIRKMSKGMKQKVGIVAAFMHSPKLIILDEPTSGLDPLMQRVFIELVLEEKAAGTTF 180 TPIRKMSKGMKQKVGIVAAFMH P+++ILDEPTSGLDPLMQ+VFI+L++EEK G T Sbjct: 121 VKTPIRKMSKGMKQKVGIVAAFMHDPEVLILDEPTSGLDPLMQQVFIDLIVEEKQRGKTI 180 Query: 181 LMSSHSFQEIERTCDRAAIIKDGRIVTVKNIHELQSMQRKLFXXXXXXXXXXXXXXXSGL 240 LMSSH F EIERTCDR AIIKDGR+VTV+NIH+LQ M+R++ L Sbjct: 181 LMSSHIFTEIERTCDRVAIIKDGRLVTVENIHDLQGMRRQVIDVTVSSEEEIDSLTKCNL 240 Query: 241 QVESHEGNRVRIAIQGDYAAFTQELAHYAVRSIDISTQNLEDIFMNYYDRDREVTAE 297 Q E+ +G I +QG+Y Q L++Y V ++ +LE +FM+YYD+ V E Sbjct: 241 QFEAVKGREASIIVQGNYQTVLQILSNYNVTALQTRAMDLEHLFMHYYDKKEGVKHE 297 >ref|NP_657502.1| ABC_tran, ABC transporter [Bacillus anthracis A2012] Length = 297 Score = 350 bits (899), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 164/297 (55%), Positives = 214/297 (72%) Query: 1 MLKVEGLSKRFSNGRGIDNVSFTVHQGEVFGFLGPNGAGKSTTIRHIMGFMQPDRGSVTI 60 M+ V+ ++K+FSNG+G+ +++F V +GEVFG+LGPNGAGKSTTI ++MGF++P +I Sbjct: 1 MISVQNVTKQFSNGKGLFHITFDVKEGEVFGYLGPNGAGKSTTIXNLMGFIKPTSXKSSI 60 Query: 61 GGLDAWKGQGTVQKLTGYLPGEINFIDGMTGTSFLNFMTSMQGMKDTSKRDRLIQRLQFD 120 GLD W +Q+ GYLPGEI+FI+GM G FL M M+G+KDT +RD LI+RLQFD Sbjct: 61 FGLDCWNEAAKIQREVGYLPGEISFIEGMNGLEFLKLMQGMRGLKDTKRRDELIERLQFD 120 Query: 121 AATPIRKMSKGMKQKVGIVAAFMHSPKLIILDEPTSGLDPLMQRVFIELVLEEKAAGTTF 180 TPIRKMSKGMKQKVGIVAAFMH P+++ILDEPTSGLDPLMQ+VFI+L++EEK G T Sbjct: 121 VKTPIRKMSKGMKQKVGIVAAFMHDPEVLILDEPTSGLDPLMQQVFIDLIVEEKQRGKTI 180 Query: 181 LMSSHSFQEIERTCDRAAIIKDGRIVTVKNIHELQSMQRKLFXXXXXXXXXXXXXXXSGL 240 LMSSH F EIERTCDR AIIKDGR+VTV+NIH+LQ M+R++ L Sbjct: 181 LMSSHIFTEIERTCDRVAIIKDGRLVTVENIHDLQGMRRQVIDVTVSSEEEIDSLTKCNL 240 Query: 241 QVESHEGNRVRIAIQGDYAAFTQELAHYAVRSIDISTQNLEDIFMNYYDRDREVTAE 297 Q E+ +G I +QG+Y Q L++Y V ++ +LE +FM+YYD+ V E Sbjct: 241 QFEAVKGREASIIVQGNYQTVLQILSNYNVTALQTRAMDLEHLFMHYYDKKEGVKHE 297 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.321 0.136 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 388,524,587 Number of extensions: 14733794 Number of successful extensions: 96485 Number of sequences better than 1.0e-05: 13945 Number of HSP's gapped: 85847 Number of HSP's successfully gapped: 14670 Length of query: 297 Length of database: 757,237,578 Length adjustment: 125 Effective length of query: 172 Effective length of database: 417,850,203 Effective search space: 71870234916 Effective search space used: 71870234916 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 125 (52.8 bits)