BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0405.0003.p (334 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAM19251.1| putative permease [Bacillus thuringiensis serovar... 185 1e-45 ref|NP_979906.1| ABC transporter, permease protein [Bacillus cer... 182 1e-44 ref|NP_833322.1| ABC transporter permease protein [Bacillus cere... 180 5e-44 ref|NP_657500.1| hypothetical protein predicted by GeneMark [Bac... 147 4e-34 ref|NP_978305.1| membrane protein, putative [Bacillus cereus ATC... 95 2e-18 >gb|AAM19251.1| putative permease [Bacillus thuringiensis serovar thuringiensis] Length = 268 Score = 185 bits (470), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 91/241 (37%), Positives = 140/241 (58%), Gaps = 2/241 (0%) Query: 1 MNFSLYKEMMRVNLKGIMNYAVGSAFYMLFMIWLYPGLGGSTAAIDELVKAMPEGVGNAF 60 MN L+ ++ K I++YA G+A Y+ +IW++P + S ++EL+ AMP+ V Sbjct: 1 MNKQLFLASLKETQKSILSYACGAALYLWLLIWIFPSMV-SAKGLNELIAAMPDSVKKIV 59 Query: 61 GLNSGFASAEAFISGEYYGXXXXXXXXXXXXXXSTQLIARLVDRGSMAYLLATPTTRRKV 120 G+ S + F++GEYY +T LIAR VD+G+MAYLLATP +R ++ Sbjct: 60 GMESPIQNVMDFLAGEYYSLLFIIILTIFCVTVATHLIARHVDKGAMAYLLATPVSRVQI 119 Query: 121 AFTQGLVLVTSLFIILAVTLLSGFAGKSWFLGTKYEFDMGRFTQLNTVAFLLFFAIGGLC 180 A TQ VL+ L II++VT ++G G WFL + F ++N V L+F + Sbjct: 120 AITQATVLILGLLIIVSVTYVAGLVGAEWFLQDN-NLNKELFLKINIVGGLIFLVVSAYS 178 Query: 181 FLISCACNDEKKALGISGAVTFGFFTLDLLGKISGKLDVLRYFTLFSFYRPAHIVQGTAE 240 F SC CNDE+KAL S ++T FF LD++GK+S KL+ ++ +LF+ +RP I +G Sbjct: 179 FFFSCICNDERKALSYSASLTILFFVLDMVGKLSDKLEWMKNLSLFTLFRPKEIAEGAYN 238 Query: 241 V 241 + Sbjct: 239 I 239 >ref|NP_979906.1| ABC transporter, permease protein [Bacillus cereus ATCC 10987] gb|AAS42514.1| ABC transporter, permease protein [Bacillus cereus ATCC 10987] Length = 259 Score = 182 bits (461), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 90/232 (38%), Positives = 136/232 (58%), Gaps = 2/232 (0%) Query: 10 MRVNLKGIMNYAVGSAFYMLFMIWLYPGLGGSTAAIDELVKAMPEGVGNAFGLNSGFASA 69 M+ K I++YA+G+A Y+ +IW++P + S ++EL+ AMP+ V G+ S + Sbjct: 1 MKEAHKSILSYAMGAALYLWLLIWIFPSMV-SAKGLNELISAMPDSVKKIVGMESPIQNV 59 Query: 70 EAFISGEYYGXXXXXXXXXXXXXXSTQLIARLVDRGSMAYLLATPTTRRKVAFTQGLVLV 129 F++GEYY +T LIAR VD+G+MAYLLATP +R K+A TQ VL+ Sbjct: 60 MDFLAGEYYSLLFIIILTIFCVTVATHLIARHVDKGAMAYLLATPVSRVKIAITQASVLI 119 Query: 130 TSLFIILAVTLLSGFAGKSWFLGTKYEFDMGRFTQLNTVAFLLFFAIGGLCFLISCACND 189 L II+ VT ++G G WFL + F ++N V L F + F SC CND Sbjct: 120 LGLLIIVVVTYVAGIVGAEWFLQDN-NLNKELFLKINIVGGLTFLVVSAYSFFFSCICND 178 Query: 190 EKKALGISGAVTFGFFTLDLLGKISGKLDVLRYFTLFSFYRPAHIVQGTAEV 241 E+KAL S ++T FF L+++GK+S KL+ ++ +LF+ +RP I +GT + Sbjct: 179 ERKALSYSASLTILFFVLNMVGKLSDKLEWMKSLSLFTLFRPKEIAEGTYNI 230 >ref|NP_833322.1| ABC transporter permease protein [Bacillus cereus ATCC 14579] gb|AAP10523.1| ABC transporter permease protein [Bacillus cereus ATCC 14579] Length = 251 Score = 180 bits (456), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 88/224 (39%), Positives = 133/224 (59%), Gaps = 2/224 (0%) Query: 18 MNYAVGSAFYMLFMIWLYPGLGGSTAAIDELVKAMPEGVGNAFGLNSGFASAEAFISGEY 77 M+YA G+A Y+ +IW++P + S ++EL+ AMP+ V G+ S + F++GEY Sbjct: 1 MSYASGAALYLWLLIWIFPSMV-SAKGLNELIAAMPDSVKKIVGMESPIQNVMDFLAGEY 59 Query: 78 YGXXXXXXXXXXXXXXSTQLIARLVDRGSMAYLLATPTTRRKVAFTQGLVLVTSLFIILA 137 Y +T LIAR VD+G+MAYLLATP +R ++A TQ VL+ L II++ Sbjct: 60 YSLLFIIILTIFCVTVATHLIARHVDKGAMAYLLATPVSRVQIAITQAAVLILGLLIIVS 119 Query: 138 VTLLSGFAGKSWFLGTKYEFDMGRFTQLNTVAFLLFFAIGGLCFLISCACNDEKKALGIS 197 VT ++G G WFL + F ++N V L+F I F SC CNDE+KAL S Sbjct: 120 VTYVAGLVGAEWFLQDN-TLNKELFLKINVVGGLIFLVISAYSFFFSCICNDERKALSYS 178 Query: 198 GAVTFGFFTLDLLGKISGKLDVLRYFTLFSFYRPAHIVQGTAEV 241 ++T FF LD++GK+S KL+ ++ +LF+ +RP I +G+ + Sbjct: 179 ASLTILFFVLDMVGKLSDKLEWMKNLSLFTLFRPKEIAEGSYNI 222 >ref|NP_657500.1| hypothetical protein predicted by GeneMark [Bacillus anthracis A2012] Length = 208 Score = 147 bits (370), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 73/180 (40%), Positives = 104/180 (57%), Gaps = 1/180 (0%) Query: 62 LNSGFASAEAFISGEYYGXXXXXXXXXXXXXXSTQLIARLVDRGSMAYLLATPTTRRKVA 121 + S + F++GEYY +T LIAR VD+G+MAYLLATP +R K+A Sbjct: 1 MESPIQNVMDFLAGEYYSLLFIIILTIFCVTVATHLIARHVDKGAMAYLLATPVSRVKIA 60 Query: 122 FTQGLVLVTSLFIILAVTLLSGFAGKSWFLGTKYEFDMGRFTQLNTVAFLLFFAIGGLCF 181 TQ VL+ L II+ VT ++G G WFL + F ++N V L+FF + F Sbjct: 61 ITQAAVLIVGLLIIVVVTYVAGIVGAEWFLQDN-NLNKELFLKINIVGGLIFFVVSAYSF 119 Query: 182 LISCACNDEKKALGISGAVTFGFFTLDLLGKISGKLDVLRYFTLFSFYRPAHIVQGTAEV 241 SC CNDE+KAL S ++T FF D++GK+S KL+ +R +LF+ +RP I +GT + Sbjct: 120 FFSCICNDERKALSYSASLTILFFVTDMVGKLSDKLEWMRNISLFTLFRPKEIAEGTYNI 179 >ref|NP_978305.1| membrane protein, putative [Bacillus cereus ATCC 10987] gb|AAS40913.1| membrane protein, putative [Bacillus cereus ATCC 10987] Length = 261 Score = 95.1 bits (235), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 53/144 (36%), Positives = 77/144 (53%), Gaps = 1/144 (0%) Query: 94 STQLIARLVDRGSMAYLLATPTTRRKVAFTQGLVLVTSLFIILAVTLLSGFAGKSWFLGT 153 + LIA VDRGSMAYLL+TPT R V TQ L L+TSL ++ + G A F G Sbjct: 87 ANSLIASQVDRGSMAYLLSTPTKRSTVVRTQALYLITSLIMMFVIVTGVGLAAIQIFQG- 145 Query: 154 KYEFDMGRFTQLNTVAFLLFFAIGGLCFLISCACNDEKKALGISGAVTFGFFTLDLLGKI 213 + ++ F LN FLL FA + F SC N K +L + + FF L+G++ Sbjct: 146 NVDINISDFIMLNVGLFLLMFATSAISFFFSCLFNLSKNSLALGAGIPVAFFLFQLMGQV 205 Query: 214 SGKLDVLRYFTLFSFYRPAHIVQG 237 S L+ ++Y +L + + + I+ G Sbjct: 206 SKSLEKMKYLSLNTLFDTSAILNG 229 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.328 0.142 0.438 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 414,031,860 Number of extensions: 14336246 Number of successful extensions: 42421 Number of sequences better than 1.0e-05: 8 Number of HSP's gapped: 42408 Number of HSP's successfully gapped: 8 Length of query: 334 Length of database: 757,237,578 Length adjustment: 126 Effective length of query: 208 Effective length of database: 415,135,104 Effective search space: 86348101632 Effective search space used: 86348101632 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 126 (53.1 bits)