BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0402.0046.p (327 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00182664.1| hypothetical protein Exigu201901 [Exiguobacte... 264 3e-69 ref|NP_471141.1| similar to putative transmembrane proteins [Lis... 261 2e-68 ref|NP_465222.1| similar to putative transmembrane proteins [Lis... 259 5e-68 ref|ZP_00182513.1| hypothetical protein Exigu216501 [Exiguobacte... 238 2e-61 ref|NP_828640.1| putative integral membrane protein [Streptomyce... 105 2e-21 >ref|ZP_00182664.1| hypothetical protein Exigu201901 [Exiguobacterium sp. 255-15] Length = 323 Score = 264 bits (674), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 137/317 (43%), Positives = 207/317 (65%), Gaps = 2/317 (0%) Query: 10 SLIRKGNKSSGSAAIGNTCIAVVKAVAFALTGSGSMFATMMHSIADAVNQLFVFTGSVLA 69 +L+++GN+S+ +A I N+ IAV+KAVA+ LTG+ +MFA MMH+ DA NQ FVF GS L+ Sbjct: 6 TLLKRGNRSALTAGIVNSIIAVIKAVAYVLTGNVAMFAEMMHTFGDAANQFFVFIGSALS 65 Query: 70 EKRPTRRFPDGFGRVINLFCMVAVIVVTIMAYETMLEGFHLLKHPAEESGGYWINVIVLL 129 +K PT+RFP+GFGR++NL + A++ V IMAYET+ EG + P ES G+WI + VL Sbjct: 66 KKAPTKRFPNGFGRLVNLVLLGAILFVGIMAYETIHEGIAHIIQP-NESTGFWITLSVLF 124 Query: 130 LSIGADGFVWVKAMNEVLHESRIEAKGLRKFTASLKNVKRAAPPTRLVFYEDLVATSGGA 189 + + + V+ KAM E+ H++RI KG + S + +K A P TRLVF EDLVAT+GG Sbjct: 125 VGVVLESGVFYKAMQEIAHDARITTKGPKLILDSFRALKHAKPATRLVFLEDLVATAGGL 184 Query: 190 LAMLAVLVTAFTSFKLLDGVSSILIAFMMIGVAFRVGYDNMVGLIGVAAPPEIEERVARI 249 +AM+AV+++ T F +G++SI+I MM V V N G +G A + R+ + Sbjct: 185 VAMIAVIISHLTPFHQAEGIASIIIGLMMFYVVGNVFLQNAAGALG-EADETMAARLGGL 243 Query: 250 IFDEPQVTDIYQMRILQEGRYYHVEGLIELKKGMTLADADDIKFKVRDKLLADPHISDVT 309 I + V DI ++ +++EG ++HVE IE+ +T+A ADDIK ++ K+ I+DVT Sbjct: 244 IMQDADVRDISKLEVIKEGDHFHVEVEIEVDPALTIAQADDIKDRLELKIRLQQGITDVT 303 Query: 310 LGILEDNGIRNWESQTD 326 +G ED+ I+ + T+ Sbjct: 304 IGFDEDDKIQQYIVSTN 320 >ref|NP_471141.1| similar to putative transmembrane proteins [Listeria innocua] pir||AD1658 probable transmembrane protein homolog lin1805 [imported] - Listeria innocua (strain Clip11262) emb|CAC97036.1| lin1805 [Listeria innocua] Length = 321 Score = 261 bits (666), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 140/317 (44%), Positives = 210/317 (66%), Gaps = 3/317 (0%) Query: 6 ESLGSLIRKGNKSSGSAAIGNTCIAVVKAVAFALTGSGSMFATMMHSIADAVNQLFVFTG 65 E LG L+++GNKS+ +AA+ NT ++++K V + TG+ +MFA +HS+ DA NQ FVF G Sbjct: 3 ELLG-LLKEGNKSALTAALVNTIVSIIKGVTYFFTGNIAMFAETLHSLGDAANQFFVFIG 61 Query: 66 SVLAEKRPTRRFPDGFGRVINLFCMVAVIVVTIMAYETMLEGFHLLKHPAEESGGYWINV 125 S L++KRPT+RFP GFGR++NL + AVIVV IMA+ET+ EGF + P S G+ IN+ Sbjct: 62 SALSKKRPTKRFPHGFGRMVNLVLLGAVIVVGIMAFETIREGFAHIIDPT-SSTGFLINL 120 Query: 126 IVLLLSIGADGFVWVKAMNEVLHESRIEAKGLRKFTASLKNVKRAAPPTRLVFYEDLVAT 185 +VLLL + V VKAM+E+ H+ +E+KGL F S+ N+ +A T+LVF ED VAT Sbjct: 121 VVLLLCTILEFSVLVKAMHEIAHDVGLESKGLSLFKDSILNLGKAKAATKLVFLEDSVAT 180 Query: 186 SGGALAMLAVLVTAFTSFKLLDGVSSILIAFMMIGVAFRVGYDNMVGLIGVAAPPEIEER 245 GG LAM+AV+++ +T F +G++S+LI MM V +V DN G+IG + + Sbjct: 181 GGGLLAMIAVIISHYTPFHQAEGIASMLIGVMMFIVVGKVFLDNAAGVIG-ESDQSMHLT 239 Query: 246 VARIIFDEPQVTDIYQMRILQEGRYYHVEGLIELKKGMTLADADDIKFKVRDKLLADPHI 305 V +++ +P V DI + +L+EG +HV+ +EL +TLA+ DDIK ++ + + + Sbjct: 240 VGQLVMSDPDVRDIQVLTVLKEGDVFHVDVEVELDPMLTLAEVDDIKDRLEENIGKLRGV 299 Query: 306 SDVTLGILEDNGIRNWE 322 +DV + ED+ IRNWE Sbjct: 300 ADVLISFDEDDAIRNWE 316 >ref|NP_465222.1| similar to putative transmembrane proteins [Listeria monocytogenes EGD-e] pir||AI1286 probable transmembrane proteins homolog lmo1697 [imported] - Listeria monocytogenes (strain EGD-e) emb|CAC99775.1| lmo1697 [Listeria monocytogenes] Length = 321 Score = 259 bits (663), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 143/317 (45%), Positives = 211/317 (66%), Gaps = 3/317 (0%) Query: 6 ESLGSLIRKGNKSSGSAAIGNTCIAVVKAVAFALTGSGSMFATMMHSIADAVNQLFVFTG 65 E LG L+++GNKS+ +AA+ NT ++++K V + TG+ +MFA +HS+ DA NQ FVF G Sbjct: 3 ELLG-LLKEGNKSALTAALVNTVVSIIKGVTYFFTGNIAMFAETLHSLGDAANQFFVFIG 61 Query: 66 SVLAEKRPTRRFPDGFGRVINLFCMVAVIVVTIMAYETMLEGFHLLKHPAEESGGYWINV 125 S L++KRPT+RFP GFGR++NL + AVIVV IMA+ET+ EGF + HP S G+ IN+ Sbjct: 62 SALSKKRPTKRFPHGFGRMVNLVLLGAVIVVGIMAFETIREGFAHIIHPT-SSTGFLINL 120 Query: 126 IVLLLSIGADGFVWVKAMNEVLHESRIEAKGLRKFTASLKNVKRAAPPTRLVFYEDLVAT 185 VLLL + V VKAM+E+ H+ +E+KGLR F S+ N+ +A T+LVF ED VAT Sbjct: 121 TVLLLCTLLEFSVLVKAMHEIAHDVGLESKGLRLFKDSILNLGKAKAATKLVFLEDSVAT 180 Query: 186 SGGALAMLAVLVTAFTSFKLLDGVSSILIAFMMIGVAFRVGYDNMVGLIGVAAPPEIEER 245 GG LAM+AV+++ FT F +G++S+LI MM V +V DN G+IG + + Sbjct: 181 GGGLLAMIAVIISHFTPFHQAEGIASMLIGVMMFIVVGKVFLDNAAGVIG-ESDQSMHLT 239 Query: 246 VARIIFDEPQVTDIYQMRILQEGRYYHVEGLIELKKGMTLADADDIKFKVRDKLLADPHI 305 V +++ +P V DI + +L+EG +HV+ +EL +TLA+ DDIK ++ + + + Sbjct: 240 VGQLVMSDPDVRDIQVLTVLKEGDVFHVDVEVELDPMLTLAEVDDIKDRLEESIGKLRGV 299 Query: 306 SDVTLGILEDNGIRNWE 322 +DV + ED+ IRNWE Sbjct: 300 ADVLISFDEDDAIRNWE 316 >ref|ZP_00182513.1| hypothetical protein Exigu216501 [Exiguobacterium sp. 255-15] Length = 283 Score = 238 bits (606), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 122/286 (42%), Positives = 188/286 (65%), Gaps = 10/286 (3%) Query: 45 MFATMMHSIADAVNQLFVFTGSVLAEKRPTRRFPDGFGRVINLFCMVAVIVVTIMAYETM 104 MFA MMH+I DA NQ FV+ GS L++K PT+RFP+GFGR++NL + A++VV I+AYET+ Sbjct: 1 MFAEMMHTIGDAANQFFVYVGSALSKKAPTKRFPNGFGRLVNLVLLAAILVVAILAYETI 60 Query: 105 LEG-FHLLKHPAEESGGYWINVIVLLLSIGADGFVWVKAMNEVLHESRIEAKGLRKFTAS 163 EG H+L P E++ G WI + L + + + V+ KAM E+ HE+ ++++GL S Sbjct: 61 REGVLHILHAPGEKTSGLWIILTALGIGVVLEVGVFYKAMTEIAHETGLKSRGLTLVGQS 120 Query: 164 LKNVKRAAPPTRLVFYEDLVATSGGALAMLAVLVTAFTSFKLLDGVSSILIAFMMIGVAF 223 N+ +A P TRLVF EDLVAT GG +A++AVL++ +TSF +G++SILI MM V + Sbjct: 121 FANLSQAKPATRLVFMEDLVATLGGVIAIIAVLISHYTSFYQAEGIASILIGLMMFYVVY 180 Query: 224 RVGYDNMVGLIGVAAPPEIEE----RVARIIFDEPQVTDIYQMRILQEGRYYHVEGLIEL 279 V N G +G EI+E ++ I+ +P V DI ++ +++EG ++HVE IE+ Sbjct: 181 NVFIQNAAGALG-----EIDEVLTAKIGEILMRDPDVRDIEKLEVIKEGDHFHVEIEIEV 235 Query: 280 KKGMTLADADDIKFKVRDKLLADPHISDVTLGILEDNGIRNWESQT 325 G+T+A ADDIK ++ ++ I+DVT+ ED+ I++++ T Sbjct: 236 DPGLTIAQADDIKDRLELQIRILKGITDVTISFDEDDKIQHYQPPT 281 >ref|NP_828640.1| putative integral membrane protein [Streptomyces avermitilis MA-4680] dbj|BAC75175.1| putative integral membrane protein [Streptomyces avermitilis MA-4680] Length = 356 Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 74/274 (27%), Positives = 141/274 (51%), Gaps = 15/274 (5%) Query: 26 NTCIAVVKAVAFALTGSGSMFATMMHSIADAVNQLFVFTGSVLAEKRPTRRFPDGFGRVI 85 N IAV KAV L GS ++ + HS+AD++N++F+ + + +R P G+G+ Sbjct: 52 NLVIAVAKAVGGLLAGSPALLSEAAHSVADSLNEVFLLAALRRSRRPADQRHPFGYGKER 111 Query: 86 NLFCMVAVIVVTIMA-YETMLEGFHLLKHPAEES-GGYWINVIVLLLSIGADGFVWVKAM 143 + ++A + + +M + +G L+ AEES GY +IVL +++ A+G ++A+ Sbjct: 112 FFWSLLAAVGIFVMGGCFSFFQGIEALRSGAEESHSGYVAGLIVLGVALLAEGASLLRAL 171 Query: 144 NEVLHESRIEAKGLRKFTASLKNVKRAAPPTRLVFYEDLVATSGGALAMLAVLVTAFTSF 203 ++V + A+GLR P R V ED A G LAM+ + + T Sbjct: 172 HQVRGQRGSAAEGLRD------------PALRTVVAEDGTAVLGVTLAMIGMALHMVTGQ 219 Query: 204 KLLDGVSSILIAFMMIGVAFRVGYDNMVGLIGVAAPPEIEERVARIIFDEPQVTDIYQMR 263 + + +S+ I +++ VA+R+G D LIG AA PE+ R+ ++ +P++ + + Sbjct: 220 VVWEAAASMGIGALLVYVAYRLGRDARDQLIGQAADPELSGRIRALLEAQPEIDSVESLL 279 Query: 264 ILQEGRYYH-VEGLIELKKGMTLADADDIKFKVR 296 +Q G + V ++L G+ + +D+ +++ Sbjct: 280 TMQLGLHSTLVAARVDLVPGLDSEEVEDVAVRIK 313 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.323 0.138 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 457,137,101 Number of extensions: 17795599 Number of successful extensions: 45161 Number of sequences better than 1.0e-05: 72 Number of HSP's gapped: 45111 Number of HSP's successfully gapped: 72 Length of query: 327 Length of database: 757,237,578 Length adjustment: 126 Effective length of query: 201 Effective length of database: 415,135,104 Effective search space: 83442155904 Effective search space used: 83442155904 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 126 (53.1 bits)