BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0402.0040.p (318 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_947610.1| conserved hypothetical protein [Rhodopseudomona... 153 6e-36 ref|NP_774500.1| blr7860 [Bradyrhizobium japonicum] >gi|27356144... 141 3e-32 ref|NP_713088.1| transcription regulator [Leptospira interrogans... 135 9e-31 gb|EAI57213.1| unknown [environmental sequence] 135 2e-30 gb|AAS69753.1| putative transcriptional regulator (DeoR family) ... 131 3e-29 >ref|NP_947610.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009] emb|CAE27706.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009] Length = 331 Score = 153 bits (386), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 99/316 (31%), Positives = 155/316 (49%), Gaps = 13/316 (4%) Query: 1 MRLHRXXXXXXXXESRGKMKANELAEALETSVRSIYRDIDVLAESGIPMVTTPGPGGGIS 60 MR R +++G++ A ELAEA E SVR+IYRDID LA SG+P+ G GG Sbjct: 6 MRASRMLSILTTLQAKGRVTAPELAEACEVSVRTIYRDIDALAASGVPVYADRGAEGGYR 65 Query: 61 LMEGYSVNLQKLHGEEVVNLYLTGMGIPFDAQSESGXXXXXXXXXXENTLPAAYQEDIHK 120 L++GY V L L E L+L G+ P A LPA +ED + Sbjct: 66 LLDGYRVRLNGLSQSEAGALFLAGLPGPAAALGLDAAMIAAQNKLMA-ALPANVREDAGR 124 Query: 121 AKNRFYYDNTPWWEERAELPCLEHLRSAVWRCRLLRIQYRKVNGELTSRILHPYGMIVKQ 180 + RFY D W+ E E L + +AV R L++I+Y G+ R+ P G+++K Sbjct: 125 MQERFYLDAPGWFGETEEPKHLRAVAAAVLRGTLIKIRYESWRGQKRRRV-APLGLVLKG 183 Query: 181 GEWYLAAFCEAAEEVRTFKCERIVSVEVMDGQYTVPADFSLEEYW----LRGNDVFKQNC 236 G WYLA + + VRT++ R++ +D ++T PADF L YW LR N Sbjct: 184 GSWYLAGQVDGS--VRTYRIARVLDCTPLDDRFTRPADFDLAAYWQSATLRMEAELHPNV 241 Query: 237 KQDEFYPVVVRAAKERQQGL--RQYEIAEVKETEEY--LEFTLNLYSYESACRQVMNLLN 292 P+ V+ Q + E+ ++ + + + + + S+ +A +++ L Sbjct: 242 ATVRLSPLGVKLLNALSQPYVRSRTELDDIADADGWRVAKIPVGTTSWHAAA-ELLRLGP 300 Query: 293 DAEIMQPPEIREYIKE 308 +AE+++P E+R I E Sbjct: 301 EAEVLEPAELRTTIAE 316 >ref|NP_774500.1| blr7860 [Bradyrhizobium japonicum] dbj|BAC53125.1| blr7860 [Bradyrhizobium japonicum USDA 110] Length = 326 Score = 141 bits (355), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 97/316 (30%), Positives = 146/316 (46%), Gaps = 13/316 (4%) Query: 1 MRLHRXXXXXXXXESRGKMKANELAEALETSVRSIYRDIDVLAESGIPMVTTPGPGGGIS 60 MR R ++RG++ A ELA+A E SVR+IYRDID LA SG+P+ G GG Sbjct: 1 MRASRMLSILTTLQARGQVTAPELAQACEVSVRTIYRDIDALAASGVPVYADRGAEGGYR 60 Query: 61 LMEGYSVNLQKLHGEEVVNLYLTGMGIPFDAQSESGXXXXXXXXXXENTLPAAYQEDIHK 120 L++GY V L L E L+LTG+ P A LPA + D + Sbjct: 61 LLDGYRVRLNGLSQNEAEALFLTGLPGPAAALGLDAAMIAAQNKLMA-ALPANLRADAGR 119 Query: 121 AKNRFYYDNTPWWEERAELPCLEHLRSAVWRCRLLRIQYRKVNGELTSRILHPYGMIVKQ 180 + RF+ D W+ E E L + A R L++I+Y+ E R+ P G+++K Sbjct: 120 MQERFHLDAPGWFGEAEEPKHLRTIAGAALRGTLIKIRYQSWRAEKQRRV-APLGLVLKG 178 Query: 181 GEWYLAAFCEAAEEVRTFKCERIVSVEVMDGQYTVPADFSLEEYW----LRGNDVFKQNC 236 G WYLA + + VRT++ R++ +D ++ PADF L YW LR N Sbjct: 179 GGWYLAGQVDGS--VRTYRVARVLDCTALDERFDRPADFDLAAYWQAATLRLEAEMHPNV 236 Query: 237 KQDEFYPVVVRAAKERQQ----GLRQYEIAEVKETEEYLEFTLNLYSYESACRQVMNLLN 292 P V+ Q Q E A + S+ +A +++ L Sbjct: 237 AIVRLSPFGVKLLDALSQPYVRARTQIEDAADADGWRIARVPTGKTSWHAAA-ELLRLGP 295 Query: 293 DAEIMQPPEIREYIKE 308 +AE+++P ++RE + E Sbjct: 296 EAEVLEPADLREKMAE 311 >ref|NP_713088.1| transcription regulator [Leptospira interrogans serovar lai str. 56601] gb|AAN50106.1| transcription regulator [Leptospira interrogans serovar lai str. 56601] Length = 317 Score = 135 bits (341), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 93/312 (29%), Positives = 152/312 (48%), Gaps = 16/312 (5%) Query: 1 MRLHRXXXXXXXXESRGKMKANELAEALETSVRSIYRDIDVLAESGIPMVTTPGPGGGIS 60 MR R +++G++ + +LA+ LE S R+I+RD++ L+ SGIP+ G GG Sbjct: 1 MRADRLLSILLQLQAKGRISSRDLAKKLEVSERTIHRDMEALSASGIPVFAERGSKGGWE 60 Query: 61 LMEGYSVNLQKLHGEEVVNLYLTGMGIPFDAQSESGXXXXXXXXXXE--NTLPAAYQEDI 118 L EGY NL + EE+ ++ LT S+ G + +LP AYQ++ Sbjct: 61 LSEGYRTNLTGMKKEEIFSMILTS---STRIASDLGRKKDLDSALMKFMASLPPAYQKEA 117 Query: 119 HKAKNRFYYDNTPWWEERAELPCLEHLRSAVWRCRLLRIQYRKVNGELTSRILHPYGMIV 178 + R Y D W ELP L ++ AVW+ + + ++Y K + E R + P G++ Sbjct: 118 EMVRQRIYVDGAGWSCSEEELPFLSLIQEAVWQGKKIVLRY-KTDEESKKRNVSPLGLVA 176 Query: 179 KQGEWYLAAFCEAAEEVRTFKCERIVSVEVMDGQYTVPADFSLEEYWLRGNDVFKQNCKQ 238 K WYL A E +E RTF+ RIV ++ D + P F LE+YW D + + Sbjct: 177 KGKIWYLVAKYE--KEFRTFRVSRIVEAKLGDS-FERPKRFDLEKYW---KDSTQNFLSK 230 Query: 239 DEFYPVVVRAAKERQQGLRQYEIAEV----KETEEYLEFTLNLYSYESACRQVMNLLNDA 294 YPV + + L+ + K T++++E T +L + E A ++ L + Sbjct: 231 IPSYPVRFKIHVSKIDFLKNILYIRILKYSKITKDWIEVTADLETREWALHHILGLGDSV 290 Query: 295 EIMQPPEIREYI 306 + +P E+RE I Sbjct: 291 VLWEPEELRESI 302 >gb|EAI57213.1| unknown [environmental sequence] Length = 321 Score = 135 bits (339), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 85/327 (25%), Positives = 147/327 (44%), Gaps = 16/327 (4%) Query: 1 MRLHRXXXXXXXXESRGKMKANELAEALETSVRSIYRDIDVLAESGIPMVTTPGPGGGIS 60 MR R ++RG++ A LA+ S+R+IYRDID L+ +G+P+ + G GG Sbjct: 1 MRASRLLSILMTLQARGRVTAQSLADECAVSLRTIYRDIDALSAAGVPVHSERGAEGGYR 60 Query: 61 LMEGYSVNLQKLHGEEVVNLYLTGMGIPFDAQSESGXXXXXXXXXXENTLPAAYQEDIHK 120 L++GY L + +E L+L G+ P A G LPA + + Sbjct: 61 LLDGYRTRLNGMSSQEAEALFLAGLPGPVQALG-LGAVMAGAQTKLLAALPAELRSTAER 119 Query: 121 AKNRFYYDNTPWWEERAELPCLEHLRSAVWRCRLLRIQYRKVNGELTSRILHPYGMIVKQ 180 ++RF+ D W+ + + L + +AVW L+I+Y+ E RI P G+++K Sbjct: 120 MRSRFHLDAPGWFADADQPANLPLIANAVWEQHPLQIRYQSWKAEKFRRI-EPLGIVLKS 178 Query: 181 GEWYLAAFCEAAEEVRTFKCERIVSVEVMDGQYTVPADFSLEEYWLRGNDVFKQNCKQDE 240 G WY+ + R ++ RI+ + ++D + PA F L YW + E Sbjct: 179 GAWYVVG--RVGTDKRIYRISRILELSMLDETFERPATFDLATYWQDSTQRLSEEMHSSE 236 Query: 241 FYPVVVRAAKERQQGLRQY---------EIAEVKETEEYLEFTLNLYSYESACRQVMNLL 291 +R + + L + +I E + + TL + S AC +++ Sbjct: 237 ---ATLRLSPWGMKMLDAFVSPFARSGAKIGEPDPVDGWCLVTLPVGSIRQACAELLRFG 293 Query: 292 NDAEIMQPPEIREYIKEQLVLLQKVYV 318 +AE++ PPE+R + E L + Y+ Sbjct: 294 TEAEVLAPPELRAHFAEVAAALHRRYM 320 >gb|AAS69753.1| putative transcriptional regulator (DeoR family) [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 317 Score = 131 bits (329), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 91/312 (29%), Positives = 150/312 (48%), Gaps = 16/312 (5%) Query: 1 MRLHRXXXXXXXXESRGKMKANELAEALETSVRSIYRDIDVLAESGIPMVTTPGPGGGIS 60 MR R +++G++ + +LA+ LE S R+I+RD++ L+ SGIP+ G GG Sbjct: 1 MRADRLLSILLQLQAKGRISSRDLAKKLEVSERTIHRDMEALSASGIPVYAERGSKGGWE 60 Query: 61 LMEGYSVNLQKLHGEEVVNLYLTGMGIPFDAQSESGXXXXXXXXXXE--NTLPAAYQEDI 118 L EGY NL + EE+ ++ LT S+ G + +LP AYQ++ Sbjct: 61 LSEGYRTNLTGMKKEEIFSMILTS---STRIASDLGRKKDLDSALMKFMASLPPAYQKEA 117 Query: 119 HKAKNRFYYDNTPWWEERAELPCLEHLRSAVWRCRLLRIQYRKVNGELTSRILHPYGMIV 178 + R Y D W ELP L ++ AVW+ + + ++Y K + E R + P G++ Sbjct: 118 EMVRQRIYVDGAGWSCSEEELPFLSLIQEAVWQGKKIVLRY-KTDEESKKRNVSPLGLVA 176 Query: 179 KQGEWYLAAFCEAAEEVRTFKCERIVSVEVMDGQYTVPADFSLEEYWLRGNDVFKQNCKQ 238 K WYL A E +E RTF+ RIV ++ D + P F LE+YW D + + Sbjct: 177 KGKIWYLVAKYE--KEFRTFRVSRIVEAKLGDS-FERPKRFDLEKYW---KDSTQNFLSK 230 Query: 239 DEFYPVVVRAAKERQQGLRQYEIAEV----KETEEYLEFTLNLYSYESACRQVMNLLNDA 294 YPV + + L+ + K ++++E +L + E A ++ L + Sbjct: 231 IPSYPVRFKIHVSKIDFLKNILYIRILKYSKINKDWIEVIADLETREWALHHILGLGDSV 290 Query: 295 EIMQPPEIREYI 306 + +P E+RE I Sbjct: 291 VLWEPEELRESI 302 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.135 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 436,607,777 Number of extensions: 17026582 Number of successful extensions: 38403 Number of sequences better than 1.0e-05: 59 Number of HSP's gapped: 38347 Number of HSP's successfully gapped: 60 Length of query: 318 Length of database: 757,237,578 Length adjustment: 125 Effective length of query: 193 Effective length of database: 417,850,203 Effective search space: 80645089179 Effective search space used: 80645089179 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 126 (53.1 bits)