BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0402.0031.p (169 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_691854.1| hypothetical protein OB0933 [Oceanobacillus ihe... 101 6e-21 ref|NP_418940.1| hypothetical protein [Caulobacter crescentus CB... 95 7e-19 ref|ZP_00087676.1| COG0454: Histone acetyltransferase HPA2 and r... 92 4e-18 ref|NP_757868.1| hypothetical protein [Mycoplasma penetrans] >gi... 77 2e-13 ref|NP_241962.1| BH1096~unknown [Bacillus halodurans] >gi|254896... 70 3e-11 >ref|NP_691854.1| hypothetical protein OB0933 [Oceanobacillus iheyensis HTE831] dbj|BAC12889.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 179 Score = 101 bits (251), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 58/163 (35%), Positives = 94/163 (57%), Gaps = 6/163 (3%) Query: 3 LGIELVPKEQRHIISRLMQFYLYDFTRYL-ELEVDRDGAFPAYPGLEAYWNSGTNKFAYL 61 L +E V K + I+ LMQFY+Y+F++++ E+ +++DG + + L YW +N A+ Sbjct: 2 LNLEKVTKGKESILHNLMQFYIYEFSKFVPEIRLEQDGTYKLF-NLNRYW-ENSNFHAFF 59 Query: 62 FTVDDNIAGFALVDRLLRSSEGQFYMTEFFVMQKYRRSGVGTWAAHRLFDMFPGDWKVSQ 121 +++ FALV+ +S F+ EFF++ Y G G AA L MFPG+W ++Q Sbjct: 60 IKLENEYICFALVESESKSFPNTFH--EFFIIATYSGKGYGEKAATELMLMFPGNWIITQ 117 Query: 122 IRANTPARNFWHRVIGAYTGGEFKERFNPKQGNPSQYFSTLSI 164 I AN PA+ FW +++ T G+ ER++ K+ Q F T SI Sbjct: 118 IEANYPAQAFWRKLVYKLTNGDVTERYD-KERRSIQEFHTSSI 159 >ref|NP_418940.1| hypothetical protein [Caulobacter crescentus CB15] pir||H87263 hypothetical protein CC0121 [imported] - Caulobacter crescentus gb|AAK22108.1| hypothetical protein [Caulobacter crescentus CB15] Length = 151 Score = 94.7 bits (234), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 57/128 (44%), Positives = 74/128 (57%), Gaps = 7/128 (5%) Query: 20 MQFYLYDFT-----RYLELEVDRDGAFPAYPGLEAYWNSGTNKFAYLFTVDDNIAGFALV 74 MQFYL+DF+ R +E E+ DG + YPGLE YW + A+LF + GFALV Sbjct: 1 MQFYLHDFSELWFDRAVEGELGPDGRYSGYPGLETYWRDPVRE-AWLFRIGGLPVGFALV 59 Query: 75 DRLLRS-SEGQFYMTEFFVMQKYRRSGVGTWAAHRLFDMFPGDWKVSQIRANTPARNFWH 133 + L S + + EFFV++K+RR GVG AAH LF G W+ + +R NT AR FW Sbjct: 60 NDLAHSPTPIDRAVAEFFVVRKHRRRGVGLAAAHALFGSAWGVWQAATVRRNTAARAFWR 119 Query: 134 RVIGAYTG 141 RV Y G Sbjct: 120 RVAETYPG 127 >ref|ZP_00087676.1| COG0454: Histone acetyltransferase HPA2 and related acetyltransferases [Pseudomonas fluorescens PfO-1] Length = 167 Score = 92.4 bits (228), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 49/156 (31%), Positives = 79/156 (50%), Gaps = 2/156 (1%) Query: 10 KEQRHIISRLMQFYLYDFTRYLELEVDRDGAFPAYPGLEAYWNSGTNKFAYLFTVDDNIA 69 +++ + LMQFY YDF+ +L L++ G FP + YW + +L VD +A Sbjct: 11 RDELDTLENLMQFYTYDFSEWLPLKLGGHGFFPIQLK-DDYWRQPATR-PFLIHVDGELA 68 Query: 70 GFALVDRLLRSSEGQFYMTEFFVMQKYRRSGVGTWAAHRLFDMFPGDWKVSQIRANTPAR 129 GF VD L + + FFV +++R GV + A L PG W++ + AN PA+ Sbjct: 69 GFVTVDDHLLIEGADYNIGYFFVSRRWRGQGVAQFVASALLSHLPGRWQIFHVDANLPAQ 128 Query: 130 NFWHRVIGAYTGGEFKERFNPKQGNPSQYFSTLSIN 165 FW R+I +GG+F + G P ++ S++ Sbjct: 129 RFWARLIPELSGGDFTRQTGTVDGYPCTFYCLRSLS 164 >ref|NP_757868.1| hypothetical protein [Mycoplasma penetrans] dbj|BAC44272.1| hypothetical protein [Mycoplasma penetrans] Length = 160 Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 42/161 (26%), Positives = 77/161 (47%), Gaps = 4/161 (2%) Query: 1 MELGIELVPKEQRHIISRLMQFYLYDFTRYLELEVDRDGAFPAYPGLEAYWNSGTNKFAY 60 ME+ +E V QR + +L+Q YL+D + YL + D Y L+ Y+N N FAY Sbjct: 1 MEIRLERVELNQRIKLEKLLQLYLHDLSLYLPFIFNSDTCEYVY-NLDKYFNDSDNNFAY 59 Query: 61 LFTVDDNIAGFALVDRLLRSSEGQFYMTEFFVMQKYRRSGVGTWAAHRLFDMFPGDWKVS 120 + + GF L+++ + ++ + + E FV+ R +G A +F+ + G+W + Sbjct: 60 FIKSNKELLGFILINKKVNNN---YEVGEIFVLSHCRYKKIGEKAIRIIFNTYKGNWVIK 116 Query: 121 QIRANTPARNFWHRVIGAYTGGEFKERFNPKQGNPSQYFST 161 + A +FW + + YT ++ + K YF+ Sbjct: 117 TAPLSLIAESFWKKTLDNYTNKKYIVKHTGKHNRAQFYFNN 157 >ref|NP_241962.1| BH1096~unknown [Bacillus halodurans] pir||H83786 hypothetical protein BH1096 [imported] - Bacillus halodurans (strain C-125) dbj|BAB04815.1| BH1096~unknown [Bacillus halodurans] Length = 162 Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 40/138 (28%), Positives = 76/138 (55%), Gaps = 6/138 (4%) Query: 1 MELGIELVPKEQRHIISRLMQFYLYDFTRYLEL-EVDRDGAFPAYPGLEAYWN-SGTNKF 58 M + ++ V ++++ I+ L YL+D +++ + E+ DG F + GL+ +W G + Sbjct: 1 MSVTLKEVLEKEKSILRNLYSLYLHDLSKFTSMIEIGADGFF-EFEGLDKFWEVDGLS-- 57 Query: 59 AYLFTVDDNIAGFALV-DRLLRSSEGQFYMTEFFVMQKYRRSGVGTWAAHRLFDMFPGDW 117 Y +DDNI GF L+ +R E F + + F++ KY+ +G+G A ++F G + Sbjct: 58 PYFILLDDNIIGFILLLERPFLQKESDFGINDIFILNKYKGNGMGRKAIKKIFCEKQGKY 117 Query: 118 KVSQIRANTPARNFWHRV 135 V ++ N PA +FW ++ Sbjct: 118 FVIELIENRPAISFWKKI 135 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.324 0.140 0.440 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 273,080,649 Number of extensions: 11233098 Number of successful extensions: 23658 Number of sequences better than 1.0e-05: 10 Number of HSP's gapped: 23646 Number of HSP's successfully gapped: 10 Length of query: 169 Length of database: 757,237,578 Length adjustment: 117 Effective length of query: 52 Effective length of database: 439,570,995 Effective search space: 22857691740 Effective search space used: 22857691740 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 121 (51.2 bits)