BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0402.0020.p
         (136 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_658836.1| hypothetical protein predicted by GeneMark [Bac...   106   1e-22
ref|NP_834502.1| surface protein [Bacillus cereus ATCC 14579] >g...   105   4e-22

>ref|NP_658836.1| hypothetical protein predicted by GeneMark [Bacillus anthracis
           A2012]
 ref|NP_847251.1| conserved hypothetical protein [Bacillus anthracis str. Ames]
 gb|AAP28737.1| conserved hypothetical protein [Bacillus anthracis str. Ames]
          Length = 134

 Score =  106 bits (265), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 57/132 (43%), Positives = 78/132 (59%)

Query: 1   MDFHILVSMVVWTVSGSVLLCVLMYVDSLFTRYNDLEEIKAGNMAVTMRFVLKLLAQGYX 60
           M +  +V+M+VWT + +VLL  +M+VDS+FT+YNDL+EIK GN AVT RFV+KL AQGY 
Sbjct: 1   MTWMNVVAMLVWTGASAVLLFAIMWVDSIFTKYNDLKEIKNGNTAVTTRFVMKLFAQGYI 60

Query: 61  XXXXXXXXXXXGDAXXXXXXXXXXXXXXEKIVRLLLFTWAKLDLDHGTQLGKIGYGVLAG 120
                        A              E  +  +L   A LDL+ GT+ G + + +LAG
Sbjct: 61  LSQSITKANDLWQALLASAVSFVILLVVEMFIEFVLKKMAGLDLEEGTKEGSVAHAMLAG 120

Query: 121 SLHVTGALIIAA 132
           SLH+ GALI+ A
Sbjct: 121 SLHIVGALILGA 132


>ref|NP_834502.1| surface protein [Bacillus cereus ATCC 14579]
 ref|NP_981253.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
 gb|AAP11703.1| surface protein [Bacillus cereus ATCC 14579]
 gb|AAS43861.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
          Length = 134

 Score =  105 bits (262), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 56/132 (42%), Positives = 78/132 (59%)

Query: 1   MDFHILVSMVVWTVSGSVLLCVLMYVDSLFTRYNDLEEIKAGNMAVTMRFVLKLLAQGYX 60
           M +  +++M+VWT + +VLL  +M+VDS+FT+YNDL+EIK GN AVT RFV+KL AQGY 
Sbjct: 1   MTWTNVLAMLVWTGASAVLLFAIMWVDSIFTKYNDLKEIKNGNTAVTTRFVMKLFAQGYI 60

Query: 61  XXXXXXXXXXXGDAXXXXXXXXXXXXXXEKIVRLLLFTWAKLDLDHGTQLGKIGYGVLAG 120
                        A              E  +  +L   A LDL+ GT+ G + + +LAG
Sbjct: 61  LSQSITKANDLWQALLASAVSFVILLVVEMFIEFVLKKMAGLDLEEGTKEGSVAHAMLAG 120

Query: 121 SLHVTGALIIAA 132
           SLH+ GALI+ A
Sbjct: 121 SLHIVGALILGA 132


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.329    0.143    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 141,961,078
Number of extensions: 3660148
Number of successful extensions: 10586
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 10584
Number of HSP's successfully gapped: 2
Length of query: 136
Length of database: 757,237,578
Length adjustment: 98
Effective length of query: 38
Effective length of database: 491,157,876
Effective search space: 18663999288
Effective search space used: 18663999288
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 120 (50.8 bits)