BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0402.0018.p
         (115 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_00078345.1| hypothetical protein [Methanosarcina barkeri]       61   7e-09
ref|NP_633896.1| conserved protein [Methanosarcina mazei Goe1] >...    53   2e-06

>ref|ZP_00078345.1| hypothetical protein [Methanosarcina barkeri]
          Length = 112

 Score = 61.2 bits (147), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 56/101 (55%), Gaps = 2/101 (1%)

Query: 10  DIEFSAIEVGRDLLLVIGGGVRHIGAASTAYMEEGNVKVSTSAV--PHHKEHTVSESIAT 67
           +I   A +VG D LL + GG  H+GA +    +E N + S+S +  P H+E  ++   A 
Sbjct: 5   EIVLDAKKVGEDYLLTLTGGEEHVGAVAVGLFDEKNQRASSSVITMPGHREEYLALDGAR 64

Query: 68  RVAEALDRTVTVVMGIHYDNLSKEGIARVVEIVNLKVDQYL 108
           +V+ A  +T   V+GIH DN+S E I  +V  V   V+ ++
Sbjct: 65  QVSRATKKTSVFVVGIHQDNISPEEIKDIVSAVGEMVESFI 105


>ref|NP_633896.1| conserved protein [Methanosarcina mazei Goe1]
 gb|AAM31568.1| conserved protein [Methanosarcina mazei Goe1]
          Length = 126

 Score = 53.1 bits (126), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 2/101 (1%)

Query: 10  DIEFSAIEVGRDLLLVIGGGVRHIGAASTAYMEEGNVKVSTSAV--PHHKEHTVSESIAT 67
           +I     ++G D LL + GG  H GA +    +E + + S+S +  P H+E  ++   A 
Sbjct: 12  EITLEVKKLGEDYLLTLTGGKDHAGAVAVGLFDEKSGRASSSVITLPGHREEQLALDSAR 71

Query: 68  RVAEALDRTVTVVMGIHYDNLSKEGIARVVEIVNLKVDQYL 108
           RV++A  +T  VV GIH D++S E I  +V      V  ++
Sbjct: 72  RVSKATGKTSIVVAGIHVDSISLEEIKEIVSTAEEMVGNFI 112


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.316    0.132    0.357 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 140,961,305
Number of extensions: 4421777
Number of successful extensions: 15061
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 15061
Number of HSP's successfully gapped: 3
Length of query: 115
Length of database: 757,237,578
Length adjustment: 80
Effective length of query: 35
Effective length of database: 540,029,658
Effective search space: 18901038030
Effective search space used: 18901038030
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 120 (50.8 bits)