BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0402.0016.p (208 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_781584.1| dihydroorotate dehydrogenase electron transfer ... 216 2e-55 ref|NP_349258.1| Dihydroorotate dehydrogenase electron transfer ... 177 2e-43 ref|NP_782916.1| dihydroorotate dehydrogenase electron transfer ... 175 7e-43 ref|NP_623138.1| 2-polyprenylphenol hydroxylase and related flav... 146 3e-34 ref|NP_562095.1| dihydroorotate dehydrogenase electron transfer ... 138 1e-31 >ref|NP_781584.1| dihydroorotate dehydrogenase electron transfer subunit [Clostridium tetani E88] gb|AAO35521.1| dihydroorotate dehydrogenase electron transfer subunit [Clostridium tetani E88] Length = 237 Score = 216 bits (550), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 100/210 (47%), Positives = 141/210 (67%), Gaps = 11/210 (5%) Query: 1 MGQFYMLRAWGAFPLLSRPLSIHQVNDNGVEFLYHVVGEGTKILAELEPGDSLELEGPFG 60 MGQF MLRAW +P LSRP+SI+ ++ G+ FLY VVG+GT+ILA L+ GD ++++GP G Sbjct: 32 MGQFCMLRAWDKYPTLSRPISIYDIDHEGITFLYKVVGKGTEILATLKKGDEIKVDGPHG 91 Query: 61 SGFPVVDGKVALVGGGIGIAPLYYCAQELPGS------DIYLGFSREAFRTEAFRPLAAE 114 +GF V GK+ALVGGG+GIAPLY ++ L G+ DI+LGFS EA E ++ +A + Sbjct: 92 NGFSKVKGKIALVGGGVGIAPLYLASKVLKGTSKDTTVDIFLGFSDEALLEEEYKKVADK 151 Query: 115 LTVNVGGLVLDSVDFTSYDHIFVCGPHPMXXXXXXXXXXXXXXXKRPNVYLSLENRMACG 174 + VN+GG + D ++ YD+IF CGP M + +Y+S+ENRMACG Sbjct: 152 VVVNLGGFITDDINPDEYDYIFTCGPEVMMKVLYNKTKNS-----KTKLYVSMENRMACG 206 Query: 175 IGACLVCSVSCRDGQRKACADGPVFLAEEV 204 +G CLVC+ + G ++AC +GPVFL E+V Sbjct: 207 VGVCLVCTCKTKKGNKRACKEGPVFLGEDV 236 >ref|NP_349258.1| Dihydroorotate dehydrogenase electron transfer subunit [Clostridium acetobutylicum] sp|Q97FS6|PYRK_CLOAB Dihydroorotate dehydrogenase electron transfer subunit pir||C97226 dihydroorotate dehydrogenase electron transfer chain [imported] - Clostridium acetobutylicum gb|AAK80598.1| Dihydroorotate dehydrogenase electron transfer subunit [Clostridium acetobutylicum] Length = 246 Score = 177 bits (448), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 92/218 (42%), Positives = 128/218 (58%), Gaps = 16/218 (7%) Query: 2 GQFYMLRAWGAFPLLSRPLSIHQVNDNGVEFLYHVVGEGTKILAELEPGDSLELEGPFGS 61 GQFY+LRAW P LSRP+SI+ +D + FLY VVG+GT+IL++L+ GD +++ GP G+ Sbjct: 34 GQFYLLRAWDIEPTLSRPISIYDADDEKISFLYSVVGKGTEILSKLKSGDEIKITGPLGN 93 Query: 62 GFPV--VDGKVALVGGGIGIAPLYYCAQELPGS--DIYLGFSREAFRTEAFRPLAAELTV 117 GF V + GKVA+V GGIG+AP+ Y A+ L D Y GF + + EL + Sbjct: 94 GFNVKRISGKVAIVCGGIGVAPMVYLAKNLKNCNVDFYAGFKTVSKTVDNVEKYVKELKL 153 Query: 118 NV-------GGLVLDSVDFTSYDHIFVCGPHPMXXXXXXXXXXXXXXXKRPNVYLSLENR 170 + G V D+ YD++ CGP M K VY+S+E + Sbjct: 154 STEDGSIGHKGYVTDNFKPEEYDYVLCCGPEIM-----MYKVVKMCEQKNVPVYISMEKK 208 Query: 171 MACGIGACLVCSVSCRDGQRKACADGPVFLAEEVIFHD 208 MACGIGACLVC+ + G+R+AC +GPVFL E+I +D Sbjct: 209 MACGIGACLVCTCKTKGGRRRACKEGPVFLGSELILND 246 >ref|NP_782916.1| dihydroorotate dehydrogenase electron transfer subunit [Clostridium tetani E88] gb|AAO36853.1| dihydroorotate dehydrogenase electron transfer subunit [Clostridium tetani E88] Length = 242 Score = 175 bits (443), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 89/214 (41%), Positives = 125/214 (58%), Gaps = 16/214 (7%) Query: 2 GQFYMLRAWGAFPLLSRPLSIHQVNDNGVEFLYHVVGEGTKILAELEPGDSLELEGPFGS 61 GQFYMLR+W PLLSR +SI+ ++DN +EFLY VVGEGTK+L+EL+ DS++L GP G+ Sbjct: 32 GQFYMLRSWEKEPLLSRSISIYSIDDNNLEFLYAVVGEGTKLLSELKKEDSIDLLGPLGN 91 Query: 62 GFPVVD--GKVALVGGGIGIAPLYYCAQELPGS--DIYLGFSREAFRTEAFRPLAAELTV 117 GFP+ D GKVA+V GGIGIAP Y + L D+Y GF + ++ E F+ + V Sbjct: 92 GFPIEDIKGKVAVVSGGIGIAPFYEVVKNLKECEIDLYAGFRKRSYSMENFKKYVKNIYV 151 Query: 118 NV-------GGLVLDSVDFTSYDHIFVCGPHPMXXXXXXXXXXXXXXXKRPNVYLSLENR 170 G + + + YD + CGP M + +Y+S+E Sbjct: 152 ATETGEKGQKGYITEILQVNKYDMVLCCGPEMM-----MKKVIKICKEEEIPIYVSMEKH 206 Query: 171 MACGIGACLVCSVSCRDGQRKACADGPVFLAEEV 204 MACG+GACL C + G ++ C +GPVFL +E+ Sbjct: 207 MACGVGACLGCICKTKSGNKRTCKEGPVFLGDEL 240 >ref|NP_623138.1| 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Thermoanaerobacter tengcongensis] sp|P58885|PYRK_THETN Dihydroorotate dehydrogenase electron transfer subunit gb|AAM24742.1| 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Thermoanaerobacter tengcongensis] Length = 247 Score = 146 bits (368), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 89/222 (40%), Positives = 122/222 (54%), Gaps = 25/222 (11%) Query: 2 GQFYMLRAWGAFPLLSRPLSIHQVNDNGVEFLYHVVGEGTKILAELEPGDSLELEGPFGS 61 GQF M+ G L RP S++ + + LY V GEGTK L++++ GD LE+ GP G+ Sbjct: 34 GQFLMIDCQGK-TFLKRPFSVNDFEEEKMTILYQVRGEGTKNLSQMKEGDILEITGPHGN 92 Query: 62 GFPVVDGK-VALVGGGIGIAPLYYCAQELPGSDIY--LGFSREAFRTEAFRPL------A 112 GF +++GK V +VGGG+GIAPL Y A+++ +Y LGF RE F E F L Sbjct: 93 GFEILEGKRVLIVGGGVGIAPLLYLAKKVKAQKLYIALGFKRETFLVEKFEGLGEVVVTT 152 Query: 113 AELTVNVGGLVLDSVD--FTSYDHIFVCGPHPMXXXXXXXXXXXXXXXKRPNV--YLSLE 168 E + GLV V+ D ++ CGP PM + NV +SLE Sbjct: 153 EEGSTGRKGLVTSVVEEMIGEVDIVYGCGPKPMLKALQEISM-------KANVLCQISLE 205 Query: 169 NRMACGIGACLVCSVSCRDGQ----RKACADGPVFLAEEVIF 206 +MACGIGACL C+ R+ + ++ C DGPVF AEEV+F Sbjct: 206 EKMACGIGACLGCACKVREDKGFSYKRVCRDGPVFWAEEVLF 247 >ref|NP_562095.1| dihydroorotate dehydrogenase electron transfer subunit [Clostridium perfringens] sp|Q8XL63|PYRK_CLOPE Dihydroorotate dehydrogenase electron transfer subunit dbj|BAB80885.1| dihydroorotate dehydrogenase electron transfer subunit [Clostridium perfringens str. 13] Length = 246 Score = 138 bits (347), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 81/220 (36%), Positives = 113/220 (51%), Gaps = 22/220 (10%) Query: 2 GQFYMLRAWGAFPLLSRPLSIHQVNDNGVEFLYHVVGEGTKILAELEPGDSLELEGPFGS 61 GQFYM++ F L RP+S+ +VN N V F+Y VG GT + ++ GD +E+ GP G+ Sbjct: 34 GQFYMIKTPNTF--LGRPISVCEVNGNDVRFVYATVGAGTNEMKKMISGDEIEIIGPLGN 91 Query: 62 GFPVVD--GKVALVGGGIGIAPLYYCAQELPGS------DIYLGFSREAFRTEAFRPLAA 113 GF + G+VALV GGIG AP+ A+ L + D Y GF + + + Sbjct: 92 GFDINKDYGRVALVSGGIGTAPMLELAKSLRKNNKDIKMDFYGGFRDDIYLVDEIAEYVD 151 Query: 114 E--LTVNVG-----GLVLDSVDFTSYDHIFVCGPHPMXXXXXXXXXXXXXXXKRPNVYLS 166 E ++ N G G V + + YD + CGP M + NVY+S Sbjct: 152 EVKISTNTGKHGHKGFVTEILPLQEYDTVLCCGPEIMMKKVVEMCKEA-----KVNVYIS 206 Query: 167 LENRMACGIGACLVCSVSCRDGQRKACADGPVFLAEEVIF 206 +E MACG+GACLVC + G ++ C DGPVF EV F Sbjct: 207 MEKHMACGVGACLVCICKTKSGNKRTCKDGPVFNGLEVEF 246 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.324 0.144 0.454 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 307,905,508 Number of extensions: 12303509 Number of successful extensions: 27896 Number of sequences better than 1.0e-05: 73 Number of HSP's gapped: 27806 Number of HSP's successfully gapped: 73 Length of query: 208 Length of database: 757,237,578 Length adjustment: 120 Effective length of query: 88 Effective length of database: 431,425,698 Effective search space: 37965461424 Effective search space used: 37965461424 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 123 (52.0 bits)