BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0402.0009.p
         (83 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_561518.1| probable amino acid ABC transporter [Clostridiu...   141   6e-33
ref|NP_465775.1| similar to amino acid ABC transporter (ATP-bind...   140   1e-32
ref|NP_471684.1| similar to amino acid ABC transporter (ATP-bind...   140   1e-32
ref|NP_069514.1| glutamine ABC transporter, ATP-binding protein ...   138   4e-32
ref|ZP_00180511.1| hypothetical protein Mther151301 [Moorella th...   137   1e-31

>ref|NP_561518.1| probable amino acid ABC transporter [Clostridium perfringens]
 dbj|BAB80308.1| probable amino acid ABC transporter [Clostridium perfringens str.
           13]
          Length = 240

 Score =  141 bits (355), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 67/83 (80%), Positives = 76/83 (91%)

Query: 1   MLFDEPTSALDPEMVGEVLEVMKKLAEDGMTMVIVTHEMGFAREVGDRILFMDGGIIVEE 60
           MLFDEPTSALDPEMVGEVL VMK LA+DGMTMV+VTHEMGFA+EVGDRILFMD G I+EE
Sbjct: 158 MLFDEPTSALDPEMVGEVLGVMKSLAKDGMTMVVVTHEMGFAKEVGDRILFMDEGRIIEE 217

Query: 61  GDPSQVFGNPQHARTKDFLSKVL 83
           G P ++F NP+++RTKDFLSKVL
Sbjct: 218 GTPEEIFQNPKNSRTKDFLSKVL 240


>ref|NP_465775.1| similar to amino acid ABC transporter (ATP-binding protein)
           [Listeria monocytogenes EGD-e]
 pir||AC1356 amino acid ABC transporter (ATP-binding protein) homolog lmo2251
           [imported] - Listeria monocytogenes (strain EGD-e)
 emb|CAD00329.1| lmo2251 [Listeria monocytogenes]
          Length = 241

 Score =  140 bits (353), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 65/83 (78%), Positives = 74/83 (89%)

Query: 1   MLFDEPTSALDPEMVGEVLEVMKKLAEDGMTMVIVTHEMGFAREVGDRILFMDGGIIVEE 60
           MLFDEPTSALDPEMVGEVL VMK LA++GMTMV+VTHEMGFAREV DR++FMD G+I E+
Sbjct: 158 MLFDEPTSALDPEMVGEVLSVMKSLAKEGMTMVVVTHEMGFAREVADRVVFMDAGVIQEQ 217

Query: 61  GDPSQVFGNPQHARTKDFLSKVL 83
           G P +VFGNPQ+ RTKDFL KVL
Sbjct: 218 GTPEEVFGNPQNDRTKDFLGKVL 240


>ref|NP_471684.1| similar to amino acid ABC transporter (ATP-binding protein)
           [Listeria innocua]
 pir||AD1726 amino acid ABC transporter (ATP-binding protein) homolog lin2353
           [imported] - Listeria innocua (strain Clip11262)
 emb|CAC97580.1| lin2353 [Listeria innocua]
          Length = 241

 Score =  140 bits (352), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 65/83 (78%), Positives = 74/83 (89%)

Query: 1   MLFDEPTSALDPEMVGEVLEVMKKLAEDGMTMVIVTHEMGFAREVGDRILFMDGGIIVEE 60
           MLFDEPTSALDPEMVGEVL VMK LA++GMTMV+VTHEMGFAREV DR++FMD G+I E+
Sbjct: 158 MLFDEPTSALDPEMVGEVLSVMKSLAKEGMTMVVVTHEMGFAREVADRVVFMDAGVIQEQ 217

Query: 61  GDPSQVFGNPQHARTKDFLSKVL 83
           G P +VFGNPQ+ RTKDFL KVL
Sbjct: 218 GTPEEVFGNPQNDRTKDFLGKVL 240


>ref|NP_069514.1| glutamine ABC transporter, ATP-binding protein (glnQ)
           [Archaeoglobus fulgidus DSM 4304]
 pir||H69334 glutamine transport protein glnQ - Archaeoglobus fulgidus
 gb|AAB90561.1| glutamine ABC transporter, ATP-binding protein (glnQ)
           [Archaeoglobus fulgidus DSM 4304]
          Length = 242

 Score =  138 bits (348), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 63/83 (75%), Positives = 74/83 (89%)

Query: 1   MLFDEPTSALDPEMVGEVLEVMKKLAEDGMTMVIVTHEMGFAREVGDRILFMDGGIIVEE 60
           MLFDE TSALDPE+V EVL+VMK+LA DGMTMV+VTHEMGFAREVGDR++FMDGG+IVEE
Sbjct: 160 MLFDEVTSALDPELVKEVLDVMKQLARDGMTMVVVTHEMGFAREVGDRVIFMDGGVIVEE 219

Query: 61  GDPSQVFGNPQHARTKDFLSKVL 83
           G P Q+F NP+H RT+ FLS +L
Sbjct: 220 GKPEQIFSNPKHERTRKFLSMIL 242


>ref|ZP_00180511.1| hypothetical protein Mther151301 [Moorella thermoacetica ATCC
           39073]
          Length = 242

 Score =  137 bits (344), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 65/83 (78%), Positives = 73/83 (87%)

Query: 1   MLFDEPTSALDPEMVGEVLEVMKKLAEDGMTMVIVTHEMGFAREVGDRILFMDGGIIVEE 60
           MLFDEPTSALDPEMVGEVL VMK LA DGMTMV+VTHEMGFAREVGDR+LFMD G+I+EE
Sbjct: 160 MLFDEPTSALDPEMVGEVLAVMKDLARDGMTMVVVTHEMGFAREVGDRVLFMDEGLILEE 219

Query: 61  GDPSQVFGNPQHARTKDFLSKVL 83
           G P Q+F N Q+ RT+ FLSK+L
Sbjct: 220 GTPDQLFNNCQNPRTRAFLSKIL 242


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.320    0.139    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 124,301,420
Number of extensions: 4118797
Number of successful extensions: 42613
Number of sequences better than 1.0e-05: 3614
Number of HSP's gapped: 44773
Number of HSP's successfully gapped: 3822
Length of query: 83
Length of database: 757,237,578
Length adjustment: 52
Effective length of query: 31
Effective length of database: 616,052,430
Effective search space: 19097625330
Effective search space used: 19097625330
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 120 (50.8 bits)