BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0402.0007.p (237 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_561517.1| probable amino acid ABC transporter [Clostridiu... 218 1e-55 ref|NP_646616.1| ORFID:MW1799~hypothetical protein, similar to g... 214 1e-54 ref|NP_372382.1| hypothetical protein [Staphylococcus aureus sub... 213 3e-54 ref|NP_622185.1| ABC-type amino acid transport system, permease ... 213 4e-54 ref|NP_471683.1| similar to amino acid ABC transporter, permease... 210 3e-53 >ref|NP_561517.1| probable amino acid ABC transporter [Clostridium perfringens] dbj|BAB80307.1| probable amino acid ABC transporter [Clostridium perfringens str. 13] Length = 223 Score = 218 bits (554), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 107/218 (49%), Positives = 153/218 (70%), Gaps = 5/218 (2%) Query: 22 FDIAYEYRNFFLSGLKYTXXXXXXXXXXXXXXXIIVSLLRMSK-----LWILRFIATAWV 76 F EY FL G K+T I+ ++ SK + ILR I+TA+V Sbjct: 6 FSFLKEYFPVFLEGAKWTLIISAITVILGALLGTILCFMKRSKFSIFKVKILRVISTAYV 65 Query: 77 EFLRGTPMLVQLFLIHYGLPEFGLEFTPIQSGAITLTINSSAYLAEIFRAGIQGVDRGQV 136 E +RGTP+L+Q++++++GLP FG++ + S I +++NS+AY++EI RAGI VD+GQ+ Sbjct: 66 EVIRGTPLLLQIYIVYFGLPSFGIQLEVLLSCIIAISLNSAAYVSEIIRAGIDAVDKGQL 125 Query: 137 EAARSLGMRQGMTMRYIVLPQAIKNVLPAIGNEFITIIKESSIVSMIGVADLLFEARSVT 196 EAARSLGM +GM MR I+LPQAIKN+LPAIGNEF+ IIKESS+ S IGVA+L++ ++ VT Sbjct: 126 EAARSLGMTEGMAMRLIILPQAIKNILPAIGNEFVAIIKESSMASTIGVAELMYSSKIVT 185 Query: 197 TITYEGLNPLIVIAVMYFVLTFTLSKVLGLLERRLNTD 234 TY+G PLIVIA+ YFV+TF+L +V+ +E+RL+ Sbjct: 186 GATYKGFEPLIVIAMFYFVMTFSLGRVMSYVEKRLSKS 223 >ref|NP_646616.1| ORFID:MW1799~hypothetical protein, similar to glutamine-binding periplasmic protein [Staphylococcus aureus subsp. aureus MW2] dbj|BAB95664.1| MW1799 [Staphylococcus aureus subsp. aureus MW2] Length = 485 Score = 214 bits (545), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 103/210 (49%), Positives = 150/210 (71%), Gaps = 1/210 (0%) Query: 27 EYRNFFLSGLKYTXXXXXXXXXXXXXXXIIVSLLRMSKLWILRFIATAWVEFLRGTPMLV 86 +Y +FFL G+K T V+L+++SK+ I+ +IA+ ++E LRGTPMLV Sbjct: 276 KYGSFFLKGIKITILISLIGVALGSILGAFVALMKLSKIKIISWIASIYIEILRGTPMLV 335 Query: 87 QLFLIHYGL-PEFGLEFTPIQSGAITLTINSSAYLAEIFRAGIQGVDRGQVEAARSLGMR 145 Q+F++ +G+ GL+ + + G I L INSSAY+AEI RAGI VD+GQ+EAARSLG+ Sbjct: 336 QVFIVFFGITAALGLDISALVCGTIALVINSSAYIAEIIRAGINAVDKGQMEAARSLGLN 395 Query: 146 QGMTMRYIVLPQAIKNVLPAIGNEFITIIKESSIVSMIGVADLLFEARSVTTITYEGLNP 205 TM+ +++PQAIKN+LPA+GNEF+T+IKESSIVS IGV +++F A+ V I+++ P Sbjct: 396 YRQTMKSVIMPQAIKNILPALGNEFVTLIKESSIVSTIGVGEIMFNAQVVQGISFDPFTP 455 Query: 206 LIVIAVMYFVLTFTLSKVLGLLERRLNTDD 235 LIV A +YFVLTF L++++ ++E RLN D Sbjct: 456 LIVAAALYFVLTFVLTRIMNMIEGRLNASD 485 >ref|NP_372382.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu50] ref|NP_374965.1| hypothetical protein, similar to glutamine-binding periplasmic protein [Staphylococcus aureus subsp. aureus N315] pir||A89973 hypothetical protein SA1675 [imported] - Staphylococcus aureus (strain N315) dbj|BAB42944.1| SA1675 [Staphylococcus aureus subsp. aureus N315] dbj|BAB58020.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu50] Length = 441 Score = 213 bits (542), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 102/210 (48%), Positives = 150/210 (71%), Gaps = 1/210 (0%) Query: 27 EYRNFFLSGLKYTXXXXXXXXXXXXXXXIIVSLLRMSKLWILRFIATAWVEFLRGTPMLV 86 +Y +FFL G+K T V+L+++SK+ I+ +IA+ ++E LRGTPMLV Sbjct: 232 KYGSFFLKGIKITILISLIGVALGSILGAFVALMKLSKIKIISWIASIYIEILRGTPMLV 291 Query: 87 QLFLIHYGL-PEFGLEFTPIQSGAITLTINSSAYLAEIFRAGIQGVDRGQVEAARSLGMR 145 Q+F++ +G+ GL+ + + G I L INSSAY+AEI RAGI VD+GQ+EAARSLG+ Sbjct: 292 QVFIVFFGITAALGLDISALVCGTIALVINSSAYIAEIIRAGINAVDKGQMEAARSLGLN 351 Query: 146 QGMTMRYIVLPQAIKNVLPAIGNEFITIIKESSIVSMIGVADLLFEARSVTTITYEGLNP 205 TM+ +++PQAIKN+LPA+GNEF+T+IKESSIVS IGV +++F A+ V I+++ P Sbjct: 352 YRQTMKSVIMPQAIKNILPALGNEFVTLIKESSIVSTIGVGEIMFNAQVVQGISFDPFTP 411 Query: 206 LIVIAVMYFVLTFTLSKVLGLLERRLNTDD 235 L+V A +YFVLTF L++++ ++E RLN D Sbjct: 412 LLVAAALYFVLTFVLTRIMNMIEGRLNASD 441 >ref|NP_622185.1| ABC-type amino acid transport system, permease component [Thermoanaerobacter tengcongensis] gb|AAM23789.1| ABC-type amino acid transport system, permease component [Thermoanaerobacter tengcongensis] Length = 220 Score = 213 bits (541), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 104/211 (49%), Positives = 143/211 (67%) Query: 27 EYRNFFLSGLKYTXXXXXXXXXXXXXXXIIVSLLRMSKLWILRFIATAWVEFLRGTPMLV 86 +Y F+SGL T + ++L++MS + ++ +A++++E +RGTP+LV Sbjct: 10 KYTPLFISGLIMTLKLTFLAVTIGVLMGLFIALMKMSSIKPIKLVASSYIEVIRGTPLLV 69 Query: 87 QLFLIHYGLPEFGLEFTPIQSGAITLTINSSAYLAEIFRAGIQGVDRGQVEAARSLGMRQ 146 QL LI+ GL +FG+ +G L INSSAY+AEI RAGIQ VD GQ EAARSLGM Sbjct: 70 QLLLIYNGLMQFGMNIPAFTAGVSALAINSSAYVAEIIRAGIQAVDPGQNEAARSLGMTH 129 Query: 147 GMTMRYIVLPQAIKNVLPAIGNEFITIIKESSIVSMIGVADLLFEARSVTTITYEGLNPL 206 M MRY+++PQAIKN+LPA+GNEFI ++KES+IVS+IG ADL +A + ++TY P Sbjct: 130 AMAMRYVIIPQAIKNILPALGNEFIVMLKESAIVSVIGFADLTRQADIIQSVTYRYFEPY 189 Query: 207 IVIAVMYFVLTFTLSKVLGLLERRLNTDDRR 237 I+IA +YFV+T T SK+L L ERRL D R Sbjct: 190 IIIAAIYFVMTLTFSKLLSLFERRLRAGDIR 220 >ref|NP_471683.1| similar to amino acid ABC transporter, permease protein [Listeria innocua] pir||AC1726 amino acid ABC transporter, permease protein homolog lin2352 [imported] - Listeria innocua (strain Clip11262) emb|CAC97579.1| lin2352 [Listeria innocua] Length = 486 Score = 210 bits (534), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 99/209 (47%), Positives = 152/209 (72%) Query: 27 EYRNFFLSGLKYTXXXXXXXXXXXXXXXIIVSLLRMSKLWILRFIATAWVEFLRGTPMLV 86 +Y N+F++G T +++L++++K LR+ A ++EF+RGTP+L+ Sbjct: 278 KYGNYFITGTLITIALAAIGVLCGAILGSLLALMKLAKTRWLRWPAACYIEFVRGTPLLI 337 Query: 87 QLFLIHYGLPEFGLEFTPIQSGAITLTINSSAYLAEIFRAGIQGVDRGQVEAARSLGMRQ 146 Q+F++ +G G++ + SG I L++NS+AY+AEI RAGI V++GQ+EAARSLGM Q Sbjct: 338 QIFIVFFGTQIIGMDVSAFVSGCIALSLNSAAYVAEIIRAGISAVNKGQMEAARSLGMTQ 397 Query: 147 GMTMRYIVLPQAIKNVLPAIGNEFITIIKESSIVSMIGVADLLFEARSVTTITYEGLNPL 206 G +MRYI+LPQA+KN+LPA+GNEF+T+IKESSIVS+IGV +L+F V +++ PL Sbjct: 398 GASMRYIILPQAVKNILPALGNEFVTVIKESSIVSVIGVTELMFMTGVVQGASFKPFIPL 457 Query: 207 IVIAVMYFVLTFTLSKVLGLLERRLNTDD 235 I+ +++YFVLTF+LS++LG+ ERR+ T D Sbjct: 458 IITSLIYFVLTFSLSRLLGVAERRMRTSD 486 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.331 0.144 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 282,380,498 Number of extensions: 9604616 Number of successful extensions: 40030 Number of sequences better than 1.0e-05: 2007 Number of HSP's gapped: 38935 Number of HSP's successfully gapped: 2008 Length of query: 237 Length of database: 757,237,578 Length adjustment: 122 Effective length of query: 115 Effective length of database: 425,995,500 Effective search space: 48989482500 Effective search space used: 48989482500 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 124 (52.4 bits)