BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0402.0004.p
         (50 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O08328|GLGA_BACST Glycogen synthase (Starch [bacterial glycog...    59   4e-08
ref|ZP_00061794.1| COG0297: Glycogen synthase [Clostridium therm...    54   1e-06

>sp|O08328|GLGA_BACST Glycogen synthase (Starch [bacterial glycogen] synthase)
 dbj|BAA19591.1| bacterial glycogen synthase [Geobacillus stearothermophilus]
          Length = 485

 Score = 58.9 bits (141), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 23/49 (46%), Positives = 36/49 (73%)

Query: 1   MMYTLRRAVSFYHKPEHWKKVTKNAFAGDYSWNVSAQQYMDIYNRILEQ 49
           M+YT+RRA+SFY +P  W+++T+ A  GDYSW  SA QY   Y +++++
Sbjct: 429 MLYTIRRALSFYRQPSVWEQLTERAMRGDYSWRRSANQYKQAYEQLIKK 477


>ref|ZP_00061794.1| COG0297: Glycogen synthase [Clostridium thermocellum ATCC 27405]
          Length = 488

 Score = 53.9 bits (128), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/50 (44%), Positives = 36/50 (72%), Gaps = 1/50 (2%)

Query: 1   MMYTLRRAVSFYH-KPEHWKKVTKNAFAGDYSWNVSAQQYMDIYNRILEQ 49
           M+ T++RA+ FY+ KP+ WK + K A + DYSWN SA +Y D+Y ++ ++
Sbjct: 437 MLKTVKRAIKFYNEKPDEWKAMVKRAMSADYSWNNSASKYSDLYMKLTKK 486


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.321    0.129    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 76,167,216
Number of extensions: 1975273
Number of successful extensions: 6428
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 6433
Number of HSP's successfully gapped: 4
Length of query: 50
Length of database: 757,237,578
Length adjustment: 23
Effective length of query: 27
Effective length of database: 694,790,301
Effective search space: 18759338127
Effective search space used: 18759338127
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 120 (50.8 bits)