BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0397.0038.p (608 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00183493.1| hypothetical protein Exigu111601 [Exiguobacte... 390 e-107 ref|ZP_00018088.1| hypothetical protein [Chloroflexus aurantiacus] 310 7e-83 ref|NP_562386.1| prbable ABC transporter [Clostridium perfringen... 305 3e-81 ref|NP_241416.1| ABC transporter (ATP-binding protein) [Bacillus... 303 8e-81 ref|NP_830141.1| ABC transporter ATP-binding protein uup [Bacill... 300 7e-80 >ref|ZP_00183493.1| hypothetical protein Exigu111601 [Exiguobacterium sp. 255-15] Length = 607 Score = 390 bits (1003), Expect = e-107, Method: Compositional matrix adjust. Identities = 218/537 (40%), Positives = 313/537 (58%), Gaps = 32/537 (5%) Query: 3 LIKVKNIRKEWNGIPLFANVSFEIAEGERALLFGRNGIGKTTLLQGLLGRHPFDEGSVYY 62 ++ + ++R + LF ++SF I GE L G NG+GKTTL Q +L + EG+++ Sbjct: 56 ILSIHDVRFDLPEQTLFQHISFSIRPGEHVALVGANGVGKTTLFQLILKQLQPTEGNIFR 115 Query: 63 GLPPEEWGVLDQQLELQSDMSALDYVLSGSPELDDLKCKIERLGRLLQEAD-----GGDE 117 G G + Q L S +P + RL+++AD + Sbjct: 116 GY--TTIGHVAQHLT------------SSAPAI-----------RLVEQADRLRYQAREA 150 Query: 118 ALVAEYGEVYERYLQLDGYGWEAKAEKCLSQLMLDAAVWNLPYRQLSGGQKTRVQLAALL 177 AL A E+Y+ L LD + EA A + L ++ L VW + LSGG++TR+QLA LL Sbjct: 151 ALHASSLEIYQTALDLDAFSLEADAARALKEVQLPEHVWLHSFDTLSGGEQTRIQLACLL 210 Query: 178 ARQPKLLVLDEPTNHLDEETMAWLEEWVRDYPGTVFYVSHDRTFIERTATAVLELGPQGC 237 +QP ++LDEPTNHLD ET+ WL W+ T+ YVSH+R FI+ TA AV+EL P Sbjct: 211 VKQPDFILLDEPTNHLDSETLDWLINWINQTAITILYVSHERAFIDATADAVIELTPHQA 270 Query: 238 RRYPGAYTKYREQKEIEARTLAVQYRXXXXXXXXXXXSIRRYAEWFQQAHRAAGQND-FR 296 RY G Y YR+QKE E T +Y I +Y W QQA A + D + Sbjct: 271 TRYKGNYQAYRQQKEQERLTQEREYEKQEKTRKELKRMITQYQNWHQQAVAHASERDPYA 330 Query: 297 RAKAKKNVSRLHAKEASLERLELNRVERPQAAPQLSMKLEGEVFRGDALLDMSGVRYAYG 356 + KA K + AKE LE+ +RV +P+ + + E F L + V ++Y Sbjct: 331 KKKAAKQAKKFKAKEKQLEQTIDHRVAKPEHPASVHVAFEAASFAAKQLFTLDKVAFSYD 390 Query: 357 GGAALLENFNLTLRRGDRLAVLGPNGAGKSTLLKLIAGLLAPDRGEIRRHPRTRVGYFAQ 416 G L + ++++GDR+AV+G NG+GK+TLL+LI G L P G I RHP VGYF+Q Sbjct: 391 G-RTLFKKLTFSMQQGDRIAVIGRNGSGKTTLLRLIQGELDPMEGTITRHPALTVGYFSQ 449 Query: 417 ELDNLPLSSTILDSLLELPGMTQTEARTILGCFMFRREDVFKRIGDLSLGEKCRVAFLRL 476 L NLP+S ++LD+LL+ +++T+ART+L CF+FRR+ V+K I + S+GE+CR+AFLRL Sbjct: 450 ALSNLPVSGSLLDALLQETTISETDARTLLACFLFRRDQVYKPIAEASMGERCRIAFLRL 509 Query: 477 YFGRANLLVLDEPTNYLDIDTRERVEEALAAYPGGLVIVSHDRYLHAAVANRLLLLE 533 YF A LL+LDEPTNYLD+ TRE++E AL +PG L+ VSHDRY + ++NR + L+ Sbjct: 510 YFSGARLLILDEPTNYLDLTTREQIEAALDVFPGELLFVSHDRYFNNRLSNRTITLD 566 >ref|ZP_00018088.1| hypothetical protein [Chloroflexus aurantiacus] Length = 632 Score = 310 bits (794), Expect = 7e-83, Method: Compositional matrix adjust. Identities = 209/556 (37%), Positives = 309/556 (55%), Gaps = 30/556 (5%) Query: 1 MTLIKVKNIRKEWNGIPLFANVSFEIAEGERALLFGRNGIGKTTLLQGLLGRHPFDEGSV 60 MTL+ N+ K + +F +VSF+I+ GE+ + G NG GK+TLL+ + G D GSV Sbjct: 1 MTLLNAHNLSKYFGAELIFHDVSFQISRGEKVAIVGLNGAGKSTLLRIIAGHETPDSGSV 60 Query: 61 YYGLPPEEWGVLDQQLELQSDMSALDYVLSGSPELDDLKCKIERLGRLLQEADGGD-EAL 119 + L Q+ D + + + E++ + ++ L L + D EA+ Sbjct: 61 HLARGTR-VAYLAQEARFSGDRTLWQEMEAALAEINAWRAELLVLETRLADTTADDWEAV 119 Query: 120 VAEYGEVYERYLQLDGYGWEAKAEKCLSQLMLDAAVWNLPYRQLSGGQKTRVQLAALLAR 179 + YGE+ R+ GY E + ++ L L ++ P RQ SGGQKTR LAA L Sbjct: 120 MERYGELSARFEHAGGYEIEHRIKRTLHGLGFQPEQFHQPLRQFSGGQKTRAALAAALLS 179 Query: 180 QPKLLVLDEPTNHLDEETMAWLEEWVRDYPGTVFYVSHDRTFIERTATAVLELGPQGCRR 239 P LL+LDEPTNHLD + + WLE+++R++ GT+ VSHDR F++R LEL Sbjct: 180 DPDLLLLDEPTNHLDMQALEWLEQFLRNWDGTLIVVSHDRYFLDRVTKRTLELSFNRLED 239 Query: 240 YPGAYTKYREQKEIEARTLAVQYRXXXXXXXXXXXSIRRYAEW-FQQAHRAAGQNDFRRA 298 YPG Y KY LA++ RR E+ QQA A + RR Sbjct: 240 YPGNYEKY----------LALKAERME----------RRLKEYQAQQAFIARTEEFIRRY 279 Query: 299 KAKKNVSRLHAKEASLERLELNRV-ERPQAAPQLSMKLEGEVFRGDALLDMSGVRYAY-- 355 +A + +E LERL+ ++ ERP+ A +L + L+ ++ G+ +L + G+ + Sbjct: 280 RAGQRAREAKGREKRLERLKREQMLERPKEAAKLRVALDQQLRSGELVLRLDGLVVGFPG 339 Query: 356 --GGGAALLENFNLTLRRGDRLAVLGPNGAGKSTLLKLIAGLLAPDRGEIRRHPRTRVGY 413 G G ALL +LT+RRG+R+ +LGPNG GK+TLL+ + G L +G R RVGY Sbjct: 340 QRGEGQALLRADDLTIRRGERVGLLGPNGCGKTTLLRTLVGQLPALQGVARFGHEVRVGY 399 Query: 414 FAQELDNLPLSSTILDSLLEL-PGMTQTEARTILGCFMFRREDVFKRIGDLSLGEKCRVA 472 +AQ D L ++T+L+ ++ + PG+ + AR +L F+F +DVFKRI DLS GE+ RVA Sbjct: 400 YAQGHDVLEWNNTVLEEVVRIAPGLGEAAARNLLARFLFTGDDVFKRIADLSGGERSRVA 459 Query: 473 FLRLYFGRANLLVLDEPTNYLDIDTRERVEEALAAYPGGLVIVSHDRYLHAAVANRLLLL 532 +L N L+LDEPTN+LDID RE +E L Y G ++ VSHDRY A+A++L ++ Sbjct: 460 LAQLTLLPGNFLLLDEPTNHLDIDAREALEAVLKEYTGAILFVSHDRYFIDALADKLWIV 519 Query: 533 ERGSRPRLFPGTYEEY 548 ++G R R F G Y EY Sbjct: 520 DQG-RIREFIGNYSEY 534 >ref|NP_562386.1| prbable ABC transporter [Clostridium perfringens] dbj|BAB81176.1| prbable ABC transporter [Clostridium perfringens str. 13] Length = 643 Score = 305 bits (780), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 198/561 (35%), Positives = 306/561 (54%), Gaps = 33/561 (5%) Query: 1 MTLIKVKNIRKEWNGIPLFANVSFEIAEGERALLFGRNGIGKTTLLQGLLGRHPFDEGSV 60 M ++ +++ K + + +++F I EG++ L G NG GK+TL + L + +D G + Sbjct: 1 MIILSCRHLTKSFGIDEILRDITFNINEGDKVGLIGPNGEGKSTLFKILTKQLDYDSGEL 60 Query: 61 YYGLPPEEWGVLDQQLELQSDMSALDYVLSGSPELDDLKCKIERLGRLLQEA-DGGDE-- 117 + + G L Q L L S+ + D +LS L +L+ KI+ L L E D +E Sbjct: 61 FLD-KNKTLGYLSQNLSLDSENTIYDEMLSVFSSLTELEDKIKTLEEKLNEPYDASNEEY 119 Query: 118 --ALVAEYGEVYERYLQLDGYGWEAKAEKCLSQLMLDAAVWNLPYRQLSGGQKTRVQLAA 175 L+ +Y E Y GY + + + L L +N LSGGQKTR+ L Sbjct: 120 HNKLIKDYTLSQELYENRGGYTFRGEISRVLKGLGFLEEDFNNQIINLSGGQKTRLALCK 179 Query: 176 LLARQPKLLVLDEPTNHLDEETMAWLEEWVRDYPGTVFYVSHDRTFIERTATAVLELGPQ 235 LL R+P LL+LDEPTNHLD E + WLEE++ Y GTVF +SHDR F++ EL Sbjct: 180 LLLRKPDLLLLDEPTNHLDLEAIEWLEEYLNGYKGTVFVISHDRFFLDSVTNTTFELIGG 239 Query: 236 GCRRYPGAYTKYRE--QKEIEARTLAVQYRXXXXXXXXXXXSIRRYAEWFQQAHRAAGQN 293 Y +YTK+ E +K+IEAR A + I+R E ++ Sbjct: 240 KIHCYNASYTKFLELRKKDIEARLKAYNLQQA---------EIKRQEEIIEK-------- 282 Query: 294 DFRRAKAKKNVSRLHAKEASLERLELNRVERPQAAPQLS-MKLEGEVFRGDALLDMSGVR 352 FR +K+V +++ +L++++ R+E P+ + S + E V G+ +L + ++ Sbjct: 283 -FRSFNREKSVRAAESRQKALDKMD--RLEAPEVIKEASKISFETLVKSGNDVLHIENLK 339 Query: 353 YAYGGGAALLENFNLTLRRGDRLAVLGPNGAGKSTLLKLIAGLLAPDRGEIRRHPRTRVG 412 +Y + L EN NL L+RG+++A++G NG GK+TL K+I G+L D G + G Sbjct: 340 KSYD--SLLFENVNLDLKRGEKVALIGENGRGKTTLFKIIMGMLKQDSGSVSLGKNVFTG 397 Query: 413 YFAQELDNLPLSSTILDSLLE-LPGMTQTEARTILGCFMFRREDVFKRIGDLSLGEKCRV 471 Y+ QE NL L TI+D + + P +T TE R L F+F +DVFK I LS GEKC++ Sbjct: 398 YYDQEQSNLNLHKTIIDEVWDDFPNLTTTEVRNYLASFLFTGDDVFKEISLLSGGEKCKI 457 Query: 472 AFLRLYFGRANLLVLDEPTNYLDIDTRERVEEALAAYPGGLVIVSHDRYLHAAVANRLLL 531 L+L +ANLL+LDEPTN+LDI +RE +E+A+ +Y G L+++SHDRY V N+++ Sbjct: 458 NLLKLMLSKANLLLLDEPTNHLDIMSREALEDAILSYDGTLIVISHDRYFLNKVINKIVE 517 Query: 532 LERGSRPRLFPGTYEEYAAKE 552 L+ + + G Y Y K+ Sbjct: 518 LQENG-LKTYLGNYNYYMDKK 537 >ref|NP_241416.1| ABC transporter (ATP-binding protein) [Bacillus halodurans] pir||F83718 ABC transporter (ATP-binding protein) BH0550 [imported] - Bacillus halodurans (strain C-125) dbj|BAB04269.1| ABC transporter (ATP-binding protein) [Bacillus halodurans] Length = 642 Score = 303 bits (776), Expect = 8e-81, Method: Compositional matrix adjust. Identities = 198/572 (34%), Positives = 312/572 (54%), Gaps = 49/572 (8%) Query: 1 MTLIKVKNIRKEWNGIPLFANVSFEIAEGERALLFGRNGIGKTTLLQGLLGRHPFDEGSV 60 M +++ NI K + + +N+ E+ G+R L GRNG GK+TLL+ + + +D G + Sbjct: 1 MIVLQCVNITKSFGAETILSNIKLEVKTGDRVALVGRNGAGKSTLLKIIADKLSYDSGDL 60 Query: 61 YYGLPPE--EWGVLDQQLELQSDMSALDYVLSGSPELDDLKCKIERLGR------LLQEA 112 + P+ E G L+Q L+SD++ D +LS L ++ ++ ++ LL A Sbjct: 61 ---IIPKGVEIGYLEQHTGLESDLTIWDEMLSVFEPLQQMERRLRKMEEQMANPALLNNA 117 Query: 113 DGGDEALVAEYGEVYERYLQLDGYGWEAKAEKCLSQLMLDAAVWNLPYRQ-----LSGGQ 167 E L+ EY + + GY +EA L+ L + PY + LSGGQ Sbjct: 118 SSY-EKLLEEYDSLQVEFKDRGGYQYEADIRNVLAGLQF----ADFPYHETKIATLSGGQ 172 Query: 168 KTRVQLAALLARQPKLLVLDEPTNHLDEETMAWLEEWVRDYPGTVFYVSHDRTFIERTAT 227 KTR+ L LL +P LL+LDEPTNHLD +T++WLE+++ YPG + VSHDR F+++ T Sbjct: 173 KTRLALGKLLLTKPDLLILDEPTNHLDIDTLSWLEQYLSAYPGAILIVSHDRYFLDKLVT 232 Query: 228 AVLELGPQGCRRYPGAYTKYREQKEIEARTLAVQYRXXXXXXXXXXXSIRRYAEWFQQAH 287 V E+ +Y G Y+ Y ++K A++Y + E+ +Q Sbjct: 233 QVYEISRTKSTKYVGNYSHYLDEK-------ALRYE-------------QELKEFEKQQK 272 Query: 288 RAAGQNDF--RRAKAKKNVSRLHAKEASLERLELNRVERPQAAPQ-LSMKLEGEVFRGDA 344 A DF R R ++ +LER+ +++RP + + S + E G+ Sbjct: 273 EVAKLEDFIQRNIARASTTKRAQSRRKALERM--TKLDRPNSDEKSASFFFDIERQSGND 330 Query: 345 LLDMSGVRYAYGGGAALLENFNLTLRRGDRLAVLGPNGAGKSTLLKLIAGLLAPDRGEIR 404 +L + + ++Y G L +L L RG+ +A++GPNGAGKSTLLKL+ L D+G I Sbjct: 331 VLRVRDLTFSYDGDP-LFSRLDLDLNRGESVALIGPNGAGKSTLLKLLTKKLQADQGTIE 389 Query: 405 RHPRTRVGYFAQELDNLPLSSTILDSLLE-LPGMTQTEARTILGCFMFRREDVFKRIGDL 463 ++GY+ QE NL + +L L + P + + + RT+LG F+F EDV K + DL Sbjct: 390 YGSHVKIGYYDQEQANLHSNKQVLYELWDDYPLLPERDIRTVLGNFLFSGEDVLKVVSDL 449 Query: 464 SLGEKCRVAFLRLYFGRANLLVLDEPTNYLDIDTRERVEEALAAYPGGLVIVSHDRYLHA 523 S GEK R+A +L +ANLL++DEPTN+LD+D++E +E AL YPG L+ VSHDRY Sbjct: 450 SGGEKARLALAKLMMEKANLLIMDEPTNHLDLDSKEVLENALIDYPGTLLFVSHDRYFLN 509 Query: 524 AVANRLLLLERGSRPRLFPGTYEEYAAKERSL 555 +A R++ L+ G +P +F G Y+ Y K++ + Sbjct: 510 RMATRIIELD-GGQPSVFLGDYDYYLEKKQEI 540 >ref|NP_830141.1| ABC transporter ATP-binding protein uup [Bacillus cereus ATCC 14579] gb|AAP07342.1| ABC transporter ATP-binding protein uup [Bacillus cereus ATCC 14579] Length = 644 Score = 300 bits (768), Expect = 7e-80, Method: Compositional matrix adjust. Identities = 198/570 (34%), Positives = 302/570 (52%), Gaps = 44/570 (7%) Query: 1 MTLIKVKNIRKEWNGIPLFANVSFEIAEGERALLFGRNGIGKTTLLQGLLGRHPFDEGSV 60 + L++V + K + + AN+ E+ +R L GRNG GK+TLL+ + G D G + Sbjct: 4 LILLQVNALSKLYGAETILANIKLEVQTKDRIALVGRNGAGKSTLLKIIAGELSHDGGEI 63 Query: 61 YYGLPPEE--WGVLDQQLELQSDMSALDYVLSGSPELDDLKCKIERLGRLL-QEADGGDE 117 + P++ G L Q L++ ++ D +L+ L ++ K+ RL + + +E + +E Sbjct: 64 ---IKPKDVSIGYLAQNTGLETSLTIWDEMLTVFTHLQQMETKLRRLEQEMGKEKNFSNE 120 Query: 118 A----LVAEYGEVYERYLQLDGYGWEAKAEKCLSQLMLDAAVWNLPYRQLSGGQKTRVQL 173 A L+A+Y ++ Y GY +EA LS L LSGGQKTR+ L Sbjct: 121 ATYERLLADYDQLQLNYKDQGGYQYEADIRSILSGLGFPVETHQTTISTLSGGQKTRLAL 180 Query: 174 AALLARQPKLLVLDEPTNHLDEETMAWLEEWVRDYPGTVFYVSHDRTFIERTATAVLELG 233 LL +P LL+LDEPTNHLD ET+ WLE++++ YPG + VSHDR F+++ T V E+ Sbjct: 181 GKLLLTKPDLLILDEPTNHLDIETLTWLEQYLQGYPGAILIVSHDRYFLDKLVTQVYEIS 240 Query: 234 PQGCRRYPGAYTKYREQKEIEARTLAVQYRXXXXXXXXXXXSIRRYAEWFQQAHRAAGQN 293 + RR+ G Y+KY + K ++RY +Q A Sbjct: 241 NKESRRFVGNYSKYLDLK-----------------SALYEQEMKRYE---KQQDEIAKLE 280 Query: 294 DFRRAKAKKNVSRLH-AKEASLERLELNRVE---RPQA-APQLSMKLEGEVFRGDALLDM 348 DF +KN++R K A R +L+R+E RP + S + E G+ +L + Sbjct: 281 DF----VQKNIARASTTKRAQSRRKQLDRMELLTRPLGDSKSASFHFDIEKQSGNDVLQV 336 Query: 349 SGVRYAYGGGAALLENFNLTLRRGDRLAVLGPNGAGKSTLLKLIAGLLAPDRGEIRRHPR 408 + Y G ++E+ + L RGD +A++GPNG GKSTLLK I L G++ Sbjct: 337 NDATIGYDGN-PIIEHVTMRLTRGDSVALVGPNGIGKSTLLKSIVNKLPLLNGDVSFGSN 395 Query: 409 TRVGYFAQELDNLPLSSTILDSLL-ELPGMTQTEARTILGCFMFRREDVFKRIGDLSLGE 467 VGY+ QE NL S +L+ L E P + E RTILG F+F +DV K + LS G+ Sbjct: 396 VSVGYYDQEQANLTSSKRVLNELWDEYPLQPEKEIRTILGNFLFTGDDVLKPVSSLSGGQ 455 Query: 468 KCRVAFLRLYFGRANLLVLDEPTNYLDIDTRERVEEALAAYPGGLVIVSHDRYLHAAVAN 527 K R+A +L ++NLL+LDEPTN+LD++++E +E AL YPG L+ VSHDRY V Sbjct: 456 KARLALAKLMMQKSNLLILDEPTNHLDLNSKEILENALIDYPGTLLFVSHDRYFINRVTT 515 Query: 528 RLL-LLERGSRPRLFPGTYEEYAAKERSLM 556 ++ L G++ L G Y+ Y K+ ++ Sbjct: 516 TVVELSTEGAQEYL--GDYDYYVEKKNEMI 543 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.320 0.138 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 844,371,174 Number of extensions: 35159713 Number of successful extensions: 216715 Number of sequences better than 1.0e-05: 8887 Number of HSP's gapped: 207281 Number of HSP's successfully gapped: 10504 Length of query: 608 Length of database: 757,237,578 Length adjustment: 132 Effective length of query: 476 Effective length of database: 398,844,510 Effective search space: 189849986760 Effective search space used: 189849986760 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)