BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0397.0032.p (328 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|EAI09018.1| unknown [environmental sequence] 256 5e-67 ref|ZP_00051028.1| COG0061: Predicted sugar kinase [Magnetospiri... 153 5e-36 ref|ZP_00132378.1| hypothetical protein [Haemophilus somnus 2336] 142 8e-33 ref|NP_823498.1| hypothetical protein [Streptomyces avermitilis ... 117 4e-25 >gb|EAI09018.1| unknown [environmental sequence] Length = 307 Score = 256 bits (654), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 139/327 (42%), Positives = 191/327 (58%), Gaps = 25/327 (7%) Query: 3 TRSSENKIILIKRKTRLEELVVRYNTIQQAQFYIERLGADFSDYISEDFHYRKAVESAVM 62 R SE KIILI R TRL+EL+ RYNT +Q +FY+E F+DY ED + + Sbjct: 2 NRISERKIILIYRDTRLDELIRRYNTREQVRFYLESRSQSFADYDEEDREMKSVIRDISR 61 Query: 63 ELSALGRVQLLERQHVPNFIFGDQDTVVVLGQDGLVANTLKYLHEQPLIGVNPDPQRWDG 122 EL++LGRVQ LER +PNF+FG D +V+GQDGLVAN LKYL QPL+ VNP P+ +DG Sbjct: 62 ELASLGRVQPLERSFLPNFLFGPDDIPLVVGQDGLVANVLKYLQGQPLVAVNPLPEVFDG 121 Query: 123 VLLPFTVKDLRHLVPEVFRG-QRQVREVTLAKAQLNDGQSLYGVNDLFVGRKTHVSARYQ 181 +LLPF+ D+ +V + + ++ V+LA+A NDGQS+ VND ++G K VS RY Sbjct: 122 ILLPFSPSDVSAVVRSLIASDEMTIKSVSLARADFNDGQSMLAVNDFYIGPKLPVSVRYC 181 Query: 182 VELNGVTEQQXXXXXXXXXXXXXXXWLKSVLAGAMGIA-RSAAQLQMDXXXXXXXXXXXX 240 +EL+G E Q W+ S++AGA GI+ + A D Sbjct: 182 IELDGQKENQSSSGVIVSTGLGATGWMSSLIAGAEGISGKEIAPFAGD------------ 229 Query: 241 XXXXXIEQRLPWDHPNLYFTVREPFPSRTTSAGLVFGQISGRAPLKITSQMPEDGVIFSD 300 W +L F VREPF S TTS +V+G+I L ++S +PE GV+FSD Sbjct: 230 -----------WAAQDLMFGVREPFRSNTTSTDIVYGRIQPGKKLVLSSYVPEGGVVFSD 278 Query: 301 GVESDFLEFNSGVEATITLGEKRGRLV 327 G+ SD ++FN+G +I L E++G LV Sbjct: 279 GIVSDAIDFNAGTHVSIRLSEQQGYLV 305 >ref|ZP_00051028.1| COG0061: Predicted sugar kinase [Magnetospirillum magnetotacticum] Length = 305 Score = 153 bits (387), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 97/309 (31%), Positives = 154/309 (49%), Gaps = 36/309 (11%) Query: 9 KIILIKRKTRLEELVVRYNTIQQAQFYIERLGADFSDYISEDFHYRKAVESAVMELSALG 68 + + + R+T E L+ R+ T QA+F++E G ++ + + + A + Sbjct: 7 RAVFVTRETDYELLIARHATRGQARFFLESRGQGLAEVEARHDRFHAVLARARATVPGEW 66 Query: 69 RVQLLERQHVPNFIFGDQDTVVVLGQDGLVANTLKYLHEQPLIGVNPDPQRWDGVLLPFT 128 R + R + F+FG D VV +GQDGL+AN KYL QP+IG+NP P +DGVL+ Sbjct: 67 RQASVRRADLDRFLFGPDDVVVAVGQDGLIANVAKYLDGQPVIGINPAPDLYDGVLVRNR 126 Query: 129 VKDLRHLVPEVFRGQRQVREVTLAKAQLNDGQSLYGVNDLFVGRKTHVSARYQVEL---N 185 V+ L L+P G + + T+ +A L+ G+ L+ +N++FVG + H SARY++E Sbjct: 127 VEGLGRLLPASVAGAVAIEQRTMVQAVLDGGERLFALNEIFVGHRGHQSARYRIEAPDEG 186 Query: 186 GV-TEQQXXXXXXXXXXXXXXXWLKSVL-AGAMGIARSAAQLQMDXXXXXXXXXXXXXXX 243 G+ E+Q W +S+ A A+G+ Sbjct: 187 GIAAEEQSSSGLIVASGTGATGWARSIAEATALGLP------------------------ 222 Query: 244 XXIEQRLPWDHPNLYFTVREPFPSRTTSAGLVFGQISGRAPLKITSQMPEDGVIFSDGVE 303 L + + + VREPFPS T+ L G+++ A L +TS+M E GV+F+DG+E Sbjct: 223 ------LAPEERAVGYWVREPFPSVATATRLRAGKLT-DADLVVTSRMNEGGVVFADGIE 275 Query: 304 SDFLEFNSG 312 DFL F G Sbjct: 276 HDFLGFGWG 284 >ref|ZP_00132378.1| hypothetical protein [Haemophilus somnus 2336] Length = 172 Score = 142 bits (359), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 75/181 (41%), Positives = 100/181 (55%), Gaps = 20/181 (11%) Query: 147 REVTLAKAQLNDGQSLYGVNDLFVGRKTHVSARYQVELNGVTEQQXXXXXXXXXXXXXXX 206 + VT A+A NDGQSL VNDLF+G K+H SA+Y ++ NG E Q Sbjct: 4 KTVTFAQATTNDGQSLLAVNDLFIGPKSHTSAQYILQWNGAEEVQSSSGIIVSTGLGSTG 63 Query: 207 WLKSVLAGAMGIARSAAQLQMDXXXXXXXXXXXXXXXXXIEQRLPWDHPNLYFTVREPFP 266 W +S+LAGAM I A+ + Q W L F+VREPFP Sbjct: 64 WFQSILAGAMAITGEASH--------------------PLLQGFSWSDRKLQFSVREPFP 103 Query: 267 SRTTSAGLVFGQISGRAPLKITSQMPEDGVIFSDGVESDFLEFNSGVEATITLGEKRGRL 326 SRTT L FG I +PL++ S MPE+GVIFSDG+E D+L+FN+G A I + + +G+L Sbjct: 104 SRTTGVALTFGTIEPDSPLQLGSLMPENGVIFSDGIEDDYLQFNAGCIAHIGIADIQGQL 163 Query: 327 V 327 + Sbjct: 164 I 164 >ref|NP_823498.1| hypothetical protein [Streptomyces avermitilis MA-4680] dbj|BAC70033.1| hypothetical protein [Streptomyces avermitilis MA-4680] Length = 297 Score = 117 bits (293), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 95/322 (29%), Positives = 143/322 (44%), Gaps = 34/322 (10%) Query: 9 KIILIKRKTRLEELVVRYNTIQQAQFYIERLGADFSDYISEDFHYRKAVESAVMELSALG 68 +++L+ R T EELV R+ T QA F++ G + R+A V + Sbjct: 6 RVVLVHRTTEYEELVARHGTPGQAAFFLASRGRSVDEVAERHRRARRAWAEVVAAVPLTW 65 Query: 69 RVQLLERQHVPNFIFGDQDTVVVLGQDGLVANTLKYLHEQPLIGVNPDPQRWDGVLLPFT 128 R +ER+ + F+F +D VVV+GQDGLVAN KYL QP++G++ DP R GVL+ Sbjct: 66 RQARVERRDLDRFLFAPEDVVVVVGQDGLVANVAKYLAGQPVVGIDADPGRNPGVLVRHR 125 Query: 129 VKDLRHLVPEVFRGQRQVREVTLAKAQLNDGQSLYGVNDLFVGRKTHVSARYQV---ELN 185 D L+ G E+T+ +A +D Q L +N++++G H +ARY++ E Sbjct: 126 PGDAAALLASARSGHAD--ELTMVEAVADDTQRLLALNEIYLGAAGHQTARYRLGLDEYG 183 Query: 186 GVTEQQXXXXXXXXXXXXXXXWLKSVLAGAMGIARSAAQLQMDXXXXXXXXXXXXXXXXX 245 G E Q W++SV Sbjct: 184 GAVEPQASSGVLIGTGTGATGWIRSVW---------------------QERGEGLPLPAP 222 Query: 246 IEQRLPWDHPNLYFTVREPFPSRTTSAGLVFGQISGRAPLKITSQMPEDGVIFSDGVESD 305 +E RL W VRE +PS T LV G+++ A L +T + + + F DG+E D Sbjct: 223 VEDRLVW-------FVREAWPSPATGTSLVAGELTASARLSVTVES-DRLIAFGDGMEGD 274 Query: 306 FLEFNSGVEATITLGEKRGRLV 327 LE G + + R RLV Sbjct: 275 ALELTWGQTVRLGVAAVRLRLV 296 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.320 0.137 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 402,357,999 Number of extensions: 15061559 Number of successful extensions: 30659 Number of sequences better than 1.0e-05: 4 Number of HSP's gapped: 30656 Number of HSP's successfully gapped: 5 Length of query: 328 Length of database: 757,237,578 Length adjustment: 126 Effective length of query: 202 Effective length of database: 415,135,104 Effective search space: 83857291008 Effective search space used: 83857291008 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 126 (53.1 bits)