BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0397.0028.p (501 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_638236.1| alpha-L-fucosidase [Xanthomonas campestris pv. ... 518 e-145 ref|NP_643381.1| alpha-L-fucosidase [Xanthomonas axonopodis pv. ... 515 e-144 ref|NP_866909.1| alpha-L-fucosidase [Pirellula sp. 1] >gi|324444... 510 e-143 ref|ZP_00039660.1| COG3669: Alpha-L-fucosidase [Xylella fastidio... 506 e-142 ref|ZP_00040703.1| COG3669: Alpha-L-fucosidase [Xylella fastidio... 506 e-142 >ref|NP_638236.1| alpha-L-fucosidase [Xanthomonas campestris pv. campestris str. ATCC 33913] gb|AAM42160.1| alpha-L-fucosidase [Xanthomonas campestris pv. campestris str. ATCC 33913] Length = 561 Score = 518 bits (1333), Expect = e-145, Method: Compositional matrix adjust. Identities = 253/485 (52%), Positives = 329/485 (67%), Gaps = 12/485 (2%) Query: 21 VENGPFQADWESLRAYSVPRWYEDAKFGIFIHWGVYSVPAFETEWYARNMYREGTGVYEH 80 GPF+ DW +L+AY P WY++AKFGIFIHWGV+SVPAF +EWY+RNMY EG+ + H Sbjct: 82 ARKGPFRPDWAALKAYQSPAWYDNAKFGIFIHWGVFSVPAFGSEWYSRNMYLEGSKEFAH 141 Query: 81 HLKTYGPPDQFGYKDFIPQFTAEKFDAEEWAALFKQAGAAFVVPVAEHHDGFAMYDCPYS 140 H+ TYGP GYKD IP+FTA KFD WA LF+++GA +VVPVAEHHDGFA+YD S Sbjct: 142 HVATYGPQASSGYKDLIPKFTAPKFDPTGWAKLFRESGARYVVPVAEHHDGFALYDSKLS 201 Query: 141 EWTAAKMGPKRDVIGELGAAVRRHYMTFGVSSHRAENWWYYNGGRLLPSDVQDPKYADLY 200 +WTA KMGPKRD++GEL A+R + FG+SSHRAE+ W+++GGR SDV DP+YA LY Sbjct: 202 DWTAMKMGPKRDLLGELSTAIRAQGLHFGLSSHRAEHNWFFDGGRKFDSDVNDPRYAALY 261 Query: 201 GPAQ---PCYGDPAYPLPVLPPNEEFLDDWLVRTCDLIDRYGPQLLYFDWWIEQPVFKPY 257 GPAQ P D P ++ +LDDWL RT +LID Y P L+YFDWWI P F+ Sbjct: 262 GPAQVRLPGKDDADVANDWTPVSQAWLDDWLARTTELIDVYQPDLIYFDWWIAHPTFRSS 321 Query: 258 LQKLAAYYYNKAA---EWGQGAVINYKFDAFAEGTAVYDMERGQLADINPEVWQTCTSVG 314 L + AYYYN+ A E +G V+NYK AF EG D+ERGQL I+P WQT TSV Sbjct: 322 LPTMLAYYYNQGAARTEADRGVVVNYKLGAFPEGAGTLDIERGQLTGIHPTHWQTDTSVS 381 Query: 315 ETAWCHIADHTYKTSGAILGDLVDIVSKNGVMLLNVGPRADGTIPEEEQKLLLEVGGWLA 374 +W +I + TYK+ I+ L D+V+KNG ++LN+GPRADG+IP+ E+ +LL +G WL Sbjct: 382 NASWGYIENDTYKSPTFIIHMLADVVAKNGNLMLNIGPRADGSIPDTERGILLSIGKWLK 441 Query: 375 VNGEAIYGTRPWKVYGEGPTQVVTGTFNDTKRSPFTAQDIRFTTRGGSLLYAAVMGWPEG 434 NG AIY ++PW+VYGEGPT+VV GTF D K P+TA+D RFTTR G+ LYA +GWP Sbjct: 442 TNGGAIYDSKPWRVYGEGPTEVVGGTFQDVKTKPYTAEDFRFTTRDGA-LYAIELGWPAD 500 Query: 435 GTSVIETLGSRSKLLAGEILKVELLGSKTELKWSREEEGLTVKLPESAREQGIVVLRIEH 494 G +VI RS A + V LL + ++ + ++ +GL ++LP + V RI+ Sbjct: 501 GKAVI-----RSLTAADGVRGVTLLANGKKVPFEQQADGLHLRLPAKPVGESAYVFRIDL 555 Query: 495 AAPET 499 A T Sbjct: 556 APSST 560 >ref|NP_643381.1| alpha-L-fucosidase [Xanthomonas axonopodis pv. citri str. 306] gb|AAM37917.1| alpha-L-fucosidase [Xanthomonas axonopodis pv. citri str. 306] Length = 561 Score = 515 bits (1326), Expect = e-144, Method: Compositional matrix adjust. Identities = 250/483 (51%), Positives = 328/483 (67%), Gaps = 12/483 (2%) Query: 21 VENGPFQADWESLRAYSVPRWYEDAKFGIFIHWGVYSVPAFETEWYARNMYREGTGVYEH 80 GPF+ DW +L+AY P WY++AKFGIFIHWGV+SVPAF +EWY+RN+Y +G+ + H Sbjct: 83 ARKGPFRPDWAALKAYQSPAWYDNAKFGIFIHWGVFSVPAFGSEWYSRNIYLQGSKEFAH 142 Query: 81 HLKTYGPPDQFGYKDFIPQFTAEKFDAEEWAALFKQAGAAFVVPVAEHHDGFAMYDCPYS 140 H+ TYGP + GYKD IP+FTA KFD WA LF+Q+GA +VVPVAEHHDGFA+YD S Sbjct: 143 HVATYGPQARSGYKDLIPKFTAPKFDPTGWAKLFRQSGARYVVPVAEHHDGFALYDSKLS 202 Query: 141 EWTAAKMGPKRDVIGELGAAVRRHYMTFGVSSHRAENWWYYNGGRLLPSDVQDPKYADLY 200 +WTA KMGPKRD++GEL A+R + FG+SSHRAE+ W+++GGR SDV DP+YA LY Sbjct: 203 DWTAMKMGPKRDLLGELSKAIRAQGLHFGLSSHRAEHNWFFDGGRTFDSDVNDPRYAGLY 262 Query: 201 GPAQ---PCYGDPAYPLPVLPPNEEFLDDWLVRTCDLIDRYGPQLLYFDWWIEQPVFKPY 257 GPAQ P D P ++ +LDDWL RT +LID Y P L+YFDWWI P F+ Sbjct: 263 GPAQVRLPGKDDADVANDWTPVSQAWLDDWLARTTELIDTYQPDLIYFDWWIAHPTFRRS 322 Query: 258 LQKLAAYYYNKAA---EWGQGAVINYKFDAFAEGTAVYDMERGQLADINPEVWQTCTSVG 314 L + AYYYN+ A E +G V+NYK AF EG D+ERGQL I+P WQT TSV Sbjct: 323 LPTMLAYYYNQGAARTEADRGVVVNYKLGAFPEGAGTLDIERGQLTGIHPTHWQTDTSVS 382 Query: 315 ETAWCHIADHTYKTSGAILGDLVDIVSKNGVMLLNVGPRADGTIPEEEQKLLLEVGGWLA 374 +W +I + TYK+ I+ L D+V+KNG ++LN+GPRADG+IP+ E+ +LL +G WL Sbjct: 383 NASWGYIENDTYKSPTFIIHMLADVVAKNGNLMLNIGPRADGSIPDTERGILLAIGKWLK 442 Query: 375 VNGEAIYGTRPWKVYGEGPTQVVTGTFNDTKRSPFTAQDIRFTTRGGSLLYAAVMGWPEG 434 NG AIY + PW+VYGEGPT VV GTF D K P+TA+D RFTTR G+ LYA +GWP Sbjct: 443 TNGSAIYDSTPWRVYGEGPTGVVGGTFQDIKTKPYTAEDFRFTTRDGA-LYAIELGWPSN 501 Query: 435 GTSVIETLGSRSKLLAGEILKVELLGSKTELKWSREEEGLTVKLPESAREQGIVVLRIEH 494 G +VI +L + A + V LL + ++ + + +GL + LP + V RI+ Sbjct: 502 GEAVIRSLKA-----ADGVRAVTLLANGKKIPFEQRADGLHLHLPVKPVGESAYVFRIDL 556 Query: 495 AAP 497 ++P Sbjct: 557 SSP 559 >ref|NP_866909.1| alpha-L-fucosidase [Pirellula sp. 1] emb|CAD74450.1| alpha-L-fucosidase [Pirellula sp.] Length = 622 Score = 510 bits (1313), Expect = e-143, Method: Compositional matrix adjust. Identities = 252/491 (51%), Positives = 323/491 (65%), Gaps = 20/491 (4%) Query: 19 STVENGPFQADWESLRAYSVPRWYEDAKFGIFIHWGVYSVPAFETEWYARNMY----REG 74 +T+ GPF+ADW SL Y +P+WY+DAKFGIFIHWG YSVPA+ +EWY R MY R G Sbjct: 133 ATIAEGPFEADWNSLEKYEIPQWYKDAKFGIFIHWGAYSVPAYGSEWYPRQMYIDRDRRG 192 Query: 75 TGVYEHHLKTYGPPDQFGYKDFIPQFTAEKFDAEEWAALFKQAGAAFVVPVAEHHDGFAM 134 ++HH+ TYGP FGYKDFIPQF AEKFDA+ WA LFK GA +V+PVAEHHDGF M Sbjct: 193 DNFFQHHIDTYGPQKTFGYKDFIPQFKAEKFDAKAWAQLFKDTGARYVIPVAEHHDGFPM 252 Query: 135 YDCPYSEWTAAKMGPKRDVIGELGAAVRRHYMTFGVSSHRAENWWYYNGGRLLPSDVQDP 194 YDC ++ W A++MGPKRDVI EL AVR M FGVSSHRA NW +Y D DP Sbjct: 253 YDCAFTRWDASEMGPKRDVIQELSEAVRAKGMKFGVSSHRAFNWMFYVRDESF--DNADP 310 Query: 195 KYADLYGPAQPCYGDPA---YPLPVLPPNEEFLDDWLVRTCDLIDRYGPQLLYFDWWI-- 249 +YADLYG P + Y P +++F DDWL R+C+L+D+Y P + +FD+ I Sbjct: 311 QYADLYGRPMPFLFEENAWDYQHNFTPQDDQFKDDWLARSCELVDKYKPDVFWFDFGITP 370 Query: 250 -------EQPVFKPYLQKLAAYYYNK-AAEWGQGAVINYKFDAFAEGTAVYDMERGQLAD 301 E + +LQK AAYYYNK +A+ +INYKF+AF E AV D ER ++A+ Sbjct: 371 KHGDSTHENNTYAEHLQKFAAYYYNKTSAKDSDLGIINYKFNAFPESAAVLDKERSKMAE 430 Query: 302 INPEVWQTCTSVGETAWCHIADHTYKTSGAILGDLVDIVSKNGVMLLNVGPRADGTIPEE 361 I WQT T+V ++W + + YKT ++ DLVDIVSKNG +LLNVGPRADGTIPEE Sbjct: 431 IRKPFWQTDTAVSSSSWGYTENQRYKTPERLVNDLVDIVSKNGCLLLNVGPRADGTIPEE 490 Query: 362 EQKLLLEVGGWLAVNGEAIYGTRPWKVYGEGPTQVVTGTFNDTKRSPFTAQDIRFTTRGG 421 +Q +L +G WL VNGEAIY T WK +GEGPT V TG +++K PFT++D+RFTTR Sbjct: 491 DQAILKAIGDWLKVNGEAIYDTTYWKTFGEGPTSVSTGHVSESKDKPFTSEDLRFTTR-D 549 Query: 422 SLLYAAVMGWPEGGTSVIETLGSRSKLLAGEILKVELLGSKTELKWSREEEGLTVKLPES 481 ++LY + WPE ++TL S L EI ++LLG EL W R+ G+TV LP+ Sbjct: 550 NVLYVHGLKWPENNEITVKTLAQGSDLYPEEIRTIQLLGFDRELSWERDASGVTVSLPKD 609 Query: 482 AREQGIVVLRI 492 + VL++ Sbjct: 610 KASKFAYVLKV 620 >ref|ZP_00039660.1| COG3669: Alpha-L-fucosidase [Xylella fastidiosa Dixon] Length = 606 Score = 506 bits (1303), Expect = e-142, Method: Compositional matrix adjust. Identities = 248/511 (48%), Positives = 319/511 (62%), Gaps = 42/511 (8%) Query: 23 NGPFQADWESLRAYSVPRWYEDAKFGIFIHWGVYSVPAFETEWYARNMYREGTGVYEHHL 82 +GPF+ DW SL+ Y P WY +AKFGIFIHWGV+SVPAF +EWY+RNMY++G+ Y+HHL Sbjct: 80 HGPFRPDWPSLKQYRSPDWYNNAKFGIFIHWGVFSVPAFGSEWYSRNMYQQGSKEYQHHL 139 Query: 83 KTYGPPDQFGYKDFIPQFTAEKFDAEEWAALFKQAGAAFVVPVAEHHDGFAMYDCPYSEW 142 TYGP + FGYKDFIPQFTA FD WA LFKQAGA +VVPVAEHHDGFA+YD S+W Sbjct: 140 ATYGPQNTFGYKDFIPQFTASTFDPNAWATLFKQAGARYVVPVAEHHDGFALYDSHLSDW 199 Query: 143 TAAKMGPKRDVIGELGAAVRRHYMTFGVSSHRAENWWYYNGGRLLPSDVQDPKYADLYGP 202 TA K GPKRD++GEL A+R + FG+SSHRAE+ W+++GGR SD+ DP YADLYGP Sbjct: 200 TAVKTGPKRDLLGELSTAIRAQGLHFGLSSHRAEHNWFFDGGRQFDSDINDPHYADLYGP 259 Query: 203 AQPCYG---DPAYPLPVLPPNEEFLDDWLVRTCDLIDRYGPQLLYFDWWIEQPVFKPYLQ 259 AQ D P ++ +L+DWL RT +LIDRY P+L+YFDWWI P F+ L Sbjct: 260 AQIRLAGKTDEDVANDWTPVSQAWLNDWLARTTELIDRYSPELIYFDWWIAHPAFRNTLP 319 Query: 260 KLAAYYYNKAAEWGQ---------------------------------GAVINYKFDAFA 286 L AYYYN G V+NYK A Sbjct: 320 TLLAYYYNHGQTKNTCHAPPHHTPSTAPSPPTPITATHLTSTTTQPQCGVVVNYKLGALP 379 Query: 287 EGTAVYDMERGQLADINPEVWQTCTSVGETAWCHIADHTYKTSGAILGDLVDIVSKNGVM 346 +G D+ERGQL I+P WQT TS+ +W +I + TYK+ I+ L D+V+KNG + Sbjct: 380 DGAGTLDIERGQLTGIHPTHWQTDTSISNASWGYIENDTYKSPTFIIHMLADVVAKNGNL 439 Query: 347 LLNVGPRADGTIPEEEQKLLLEVGGWLAVNGEAIYGTRPWKVYGEGPTQVVTGTFNDTKR 406 LLN+GPRADG+IP+ E+ +LL +G WL +NG AIY T PW+ YGEGPT+V GTF DTK Sbjct: 440 LLNIGPRADGSIPDAERTILLNIGKWLNINGTAIYDTHPWRTYGEGPTEVAGGTFQDTKT 499 Query: 407 SPFTAQDIRFTTRGGSLLYAAVMGWPEGGTSVIETLGSRSKLLAGEILKVELLGSKTELK 466 P+TA+D RFT G + LYA +GWP G +VI ++ + + + V LL + Sbjct: 500 KPYTAEDFRFTVHGDT-LYAIELGWPTNGQTVIHSINA-----SDNVYSVTLLADNRPIP 553 Query: 467 WSREEEGLTVKLPESAREQGIVVLRIEHAAP 497 + + +GL + LP + V RI P Sbjct: 554 FEQHNDGLHLHLPNKPVGEHAYVFRITTHTP 584 >ref|ZP_00040703.1| COG3669: Alpha-L-fucosidase [Xylella fastidiosa Ann-1] Length = 584 Score = 506 bits (1302), Expect = e-142, Method: Compositional matrix adjust. Identities = 247/506 (48%), Positives = 318/506 (62%), Gaps = 42/506 (8%) Query: 23 NGPFQADWESLRAYSVPRWYEDAKFGIFIHWGVYSVPAFETEWYARNMYREGTGVYEHHL 82 +GPF+ DW SL+ Y P WY +AKFGIFIHWGV+SVPAF +EWY+RNMY++G+ Y+HHL Sbjct: 80 HGPFRPDWPSLKQYRSPDWYNNAKFGIFIHWGVFSVPAFGSEWYSRNMYQQGSKEYQHHL 139 Query: 83 KTYGPPDQFGYKDFIPQFTAEKFDAEEWAALFKQAGAAFVVPVAEHHDGFAMYDCPYSEW 142 TYGP + FGYKDFIPQFTA FD WA LFKQAGA +VVPVAEHHDGFA+YD S+W Sbjct: 140 ATYGPQNTFGYKDFIPQFTASTFDPNAWATLFKQAGARYVVPVAEHHDGFALYDSHLSDW 199 Query: 143 TAAKMGPKRDVIGELGAAVRRHYMTFGVSSHRAENWWYYNGGRLLPSDVQDPKYADLYGP 202 TA K GPKRD++GEL A+R + FG+SSHRAE+ W+++GGR SD+ DP YADLYGP Sbjct: 200 TAVKTGPKRDLLGELSTAIRAQGLHFGLSSHRAEHNWFFDGGRQFDSDINDPHYADLYGP 259 Query: 203 AQPCYG---DPAYPLPVLPPNEEFLDDWLVRTCDLIDRYGPQLLYFDWWIEQPVFKPYLQ 259 AQ D P ++ +L+DWL RT +LIDRY P+L+YFDWWI P F+ L Sbjct: 260 AQRRLAGKTDEDVANDWTPVSQAWLNDWLARTTELIDRYSPELIYFDWWIAHPAFRNTLP 319 Query: 260 KLAAYYYNKAAEWGQ---------------------------------GAVINYKFDAFA 286 L AYYYN G V+NYK A Sbjct: 320 TLLAYYYNHGQTKNTCHAPPHHTPSTTPSPPAPITATHLTSTTTQPQCGVVVNYKLGALP 379 Query: 287 EGTAVYDMERGQLADINPEVWQTCTSVGETAWCHIADHTYKTSGAILGDLVDIVSKNGVM 346 +G D+ERGQL I+P WQT TS+ +W +I + TYK+ I+ L D+V+KNG + Sbjct: 380 DGAGTLDIERGQLTGIHPTHWQTDTSISNASWGYIENDTYKSPTFIIHMLADVVAKNGNL 439 Query: 347 LLNVGPRADGTIPEEEQKLLLEVGGWLAVNGEAIYGTRPWKVYGEGPTQVVTGTFNDTKR 406 LLN+GPRADG+IP+ E+ +LL +G WL +NG AIY T PW+ YGEGPT+V GTF DTK Sbjct: 440 LLNIGPRADGSIPDAERTILLNIGKWLNINGTAIYDTHPWRTYGEGPTEVAGGTFQDTKT 499 Query: 407 SPFTAQDIRFTTRGGSLLYAAVMGWPEGGTSVIETLGSRSKLLAGEILKVELLGSKTELK 466 P+TA+D RFT G + LYA +GWP G +VI ++ + + + V LL + Sbjct: 500 KPYTAEDFRFTVHGDT-LYAIELGWPTNGQTVIHSINA-----SDNVYSVTLLADNRPIP 553 Query: 467 WSREEEGLTVKLPESAREQGIVVLRI 492 + + +GL + LP + V RI Sbjct: 554 FEQHNDGLHLHLPNKPVGEHAYVFRI 579 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.137 0.441 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 827,785,442 Number of extensions: 38257248 Number of successful extensions: 72296 Number of sequences better than 1.0e-05: 111 Number of HSP's gapped: 72025 Number of HSP's successfully gapped: 151 Length of query: 501 Length of database: 757,237,578 Length adjustment: 130 Effective length of query: 371 Effective length of database: 404,274,708 Effective search space: 149985916668 Effective search space used: 149985916668 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)