BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0397.0027.p (231 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00027713.1| COG3142: Uncharacterized protein involved in ... 212 6e-54 ref|NP_832817.1| Copper homeostasis protein cutC [Bacillus cereu... 170 3e-41 ref|NP_979426.1| copper homeostasis protein CutC, putative [Baci... 169 4e-41 ref|NP_693705.1| copper homeostasis protein [Oceanobacillus ihey... 168 9e-41 ref|NP_845427.1| copper homeostasis protein CutC, putative [Baci... 164 1e-39 >ref|ZP_00027713.1| COG3142: Uncharacterized protein involved in copper resistance [Burkholderia fungorum] Length = 271 Score = 212 bits (539), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 110/227 (48%), Positives = 157/227 (69%) Query: 2 LLEVIATTVKDAVIAERYGADRIELITGIREGGLTPSLGLIEEVREAVRIPVRVMVRPHA 61 LLEVIATTV DA +A + GA+R+EL+T + EGGLTPSLGLIE V AV IPV V+VRPH+ Sbjct: 43 LLEVIATTVADARLAAQAGANRLELVTAMGEGGLTPSLGLIEAVVAAVEIPVNVIVRPHS 102 Query: 62 RSFQYEETDVQTMLRDIRHIAAVGGLSLVMGMLRSDRTVDEELLKRLLQAADGMDVTFHR 121 RSF Y+ D MLRD+R + A G +V+GML + +D E L R + AADG+ +TFHR Sbjct: 103 RSFVYDADDYAVMLRDVRAVNAAGANGVVIGMLDAAGGIDREGLARAIDAADGLAITFHR 162 Query: 122 AYDEAQDQLAALEVLSRYPQITDILTSGGRDTAPEGAERIAVLERLSAASPISILAGSGL 181 A+DEA+D +L+VL + +T++LTSGG+ + I L R ++ S +++LAG+GL Sbjct: 163 AFDEARDLRESLDVLLGFDAVTNVLTSGGQPSVLHAEATIRELVRQASGSHLTVLAGAGL 222 Query: 182 TAEGLSDFVTRTAVSRVHFGSAVREDGDPLKPIDPARLQAVCSILNS 228 T + ++ FV+ T V VHFGS VR +G+ L P+D ++ V ++L++ Sbjct: 223 TVDAIAGFVSGTQVEAVHFGSGVRVNGNGLAPVDADKVAKVRALLDA 269 >ref|NP_832817.1| Copper homeostasis protein cutC [Bacillus cereus ATCC 14579] gb|AAP10018.1| Copper homeostasis protein cutC [Bacillus cereus ATCC 14579] Length = 225 Score = 170 bits (430), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 86/225 (38%), Positives = 134/225 (59%), Gaps = 1/225 (0%) Query: 2 LLEVIATTVKDAVIAERYGADRIELITGIREGGLTPSLGLIEEVREAVRIPVRVMVRPHA 61 +LEVIAT ++D E G RIELI+ EGGLTPS I++ E V IP+ VM+RPHA Sbjct: 1 MLEVIATCLEDVKRIESAGGKRIELISSYTEGGLTPSYAFIKKAVEVVSIPIHVMIRPHA 60 Query: 62 RSFQYEETDVQTMLRDIRHIAAVGGLSLVMGMLRSDRTVDEELLKRLLQAADGMDVTFHR 121 +SF Y E +++ M DI +G +V+G+L VDEE L LL DG++VT+HR Sbjct: 61 KSFTYTEEEIEMMKEDIIVAQKLGAAGVVLGVLNERNEVDEEKLADLLSVVDGINVTYHR 120 Query: 122 AYDEAQDQLAALEVLSRYPQITDILTSGGRDTAPEGAERIAVLERLSAASPISILAGSGL 181 A D+ ++ + A+ L ++ ++T +LTSGG+ E + ++++S I ++AG+G+ Sbjct: 121 AIDDIKNPVEAMSTLKKFHKVTHVLTSGGQGNIVENIPVLTEMQKVSEGQ-IQLVAGAGV 179 Query: 182 TAEGLSDFVTRTAVSRVHFGSAVREDGDPLKPIDPARLQAVCSIL 226 T E + + T +++ H G+AVRE IDP +Q + I+ Sbjct: 180 TKENIKRLLDETGITQAHVGTAVREGKSCFSEIDPNLVQELVEII 224 >ref|NP_979426.1| copper homeostasis protein CutC, putative [Bacillus cereus ATCC 10987] gb|AAS42034.1| copper homeostasis protein CutC, putative [Bacillus cereus ATCC 10987] Length = 225 Score = 169 bits (429), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 89/227 (39%), Positives = 134/227 (59%), Gaps = 5/227 (2%) Query: 2 LLEVIATTVKDAVIAERYGADRIELITGIREGGLTPSLGLIEEVREAVRIPVRVMVRPHA 61 +LEVIAT ++D ER G RIELI+ EGGLTPS I++ EAV IP+ VM+RPHA Sbjct: 1 MLEVIATCLEDVKRIERAGGKRIELISSYTEGGLTPSYAFIKKAVEAVHIPIHVMIRPHA 60 Query: 62 RSFQYEETDVQTMLRDIRHIAAVGGLSLVMGMLRSDRTVDEELLKRLLQAADGMDVTFHR 121 +SF Y E +++ M DI +G +V+G+L VDEE L LL DG++VT+HR Sbjct: 61 KSFTYTEEEIEMMKEDIVVAQKLGVAGVVLGVLNEKNEVDEEKLANLLSVVDGINVTYHR 120 Query: 122 AYDEAQDQLAALEVLSRYPQITDILTSGGRDTAPEGAERIAVLERLSAAS--PISILAGS 179 A D+ ++ + A+ L ++ ++T +LTSGG+ E I VL + S I ++ G+ Sbjct: 121 AIDDIENPVEAMRTLKKFHKVTHVLTSGGQGNI---VENIPVLTEMQKVSDGQIQLVVGA 177 Query: 180 GLTAEGLSDFVTRTAVSRVHFGSAVREDGDPLKPIDPARLQAVCSIL 226 G+T E ++ + T +S+ H G+AVRE ID ++ + I+ Sbjct: 178 GVTKENINQLLDETGISQAHVGTAVREGKSCFAEIDLNLVKELVQII 224 >ref|NP_693705.1| copper homeostasis protein [Oceanobacillus iheyensis HTE831] dbj|BAC14739.1| copper homeostasis protein [Oceanobacillus iheyensis HTE831] Length = 231 Score = 168 bits (425), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 87/227 (38%), Positives = 132/227 (58%), Gaps = 3/227 (1%) Query: 1 MLLEVIATTVKDAVIAERYGADRIELITGIREGGLTPSLGLIEEVREAVRIPVRVMVRPH 60 M +E I TV++A+ AE++G DR+EL++G++EGGLTPS G I++V E V IPV++M+RPH Sbjct: 1 MYIEAIVQTVEEAIQAEKFGVDRLELVSGMKEGGLTPSYGTIKQVLEHVNIPVQIMIRPH 60 Query: 61 ARSFQYEETDVQTMLRDIRHIAAVGGLSLVMGMLRSDRTVDEELLKRLLQAADGMDVTFH 120 + F Y + ++ T+ DIR++ +GG +V G L D T++ L+ + +D +D+T H Sbjct: 61 SYHFAYTKCELDTIYEDIRNVVELGGKGIVFGALHQDNTINMNALETVASISDELDITVH 120 Query: 121 RAYDEAQDQLAALEVLSRYPQITDILTSGGRDTAPEGAERIAVLERL--SAASPISILAG 178 RA+DE A +++ + ILTSGG EG + L L S P SIL G Sbjct: 121 RAFDEVPSLEEAFLSIAKCRNVQRILTSGGAPNCIEGKHSLKNLVSLAKSTGGP-SILPG 179 Query: 179 SGLTAEGLSDFVTRTAVSRVHFGSAVREDGDPLKPIDPARLQAVCSI 225 GL + + + HFGS V+ DGD K +D ++Q V I Sbjct: 180 GGLNVNNIDEIHHVVHADQYHFGSGVQIDGDFSKGLDAEKVQIVKGI 226 >ref|NP_845427.1| copper homeostasis protein CutC, putative [Bacillus anthracis str. Ames] gb|AAP26913.1| copper homeostasis protein CutC, putative [Bacillus anthracis str. Ames] Length = 225 Score = 164 bits (416), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 85/225 (37%), Positives = 134/225 (59%), Gaps = 1/225 (0%) Query: 2 LLEVIATTVKDAVIAERYGADRIELITGIREGGLTPSLGLIEEVREAVRIPVRVMVRPHA 61 +LEVIAT ++D ER G RIELI+ EGGLTPS I++ EAV+IP+ VM+RPHA Sbjct: 1 MLEVIATCLEDVKRIERAGGKRIELISSYTEGGLTPSYAFIKKAVEAVQIPIHVMIRPHA 60 Query: 62 RSFQYEETDVQTMLRDIRHIAAVGGLSLVMGMLRSDRTVDEELLKRLLQAADGMDVTFHR 121 +SF Y E +++ M DI +G +V+G+L V EE L LL DG++VT+HR Sbjct: 61 KSFTYTEEEIEMMKEDIVVAQKLGVAGVVLGVLNERNEVAEEKLADLLSVVDGINVTYHR 120 Query: 122 AYDEAQDQLAALEVLSRYPQITDILTSGGRDTAPEGAERIAVLERLSAASPISILAGSGL 181 A D+ ++ + A+ L ++ ++T +LTSGG+ + + ++++S I ++ G+G+ Sbjct: 121 AIDDIENPVEAMRTLKKFHKVTHVLTSGGQGNIVDNIPVLTDMQKISDGQ-IQLVVGAGV 179 Query: 182 TAEGLSDFVTRTAVSRVHFGSAVREDGDPLKPIDPARLQAVCSIL 226 T E + + T +S+ H G+AVRE ID +Q + I+ Sbjct: 180 TKENIKQLLNETGISQAHVGTAVREGKSCFAEIDLNLVQELVQII 224 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.136 0.371 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 302,116,659 Number of extensions: 11313319 Number of successful extensions: 31869 Number of sequences better than 1.0e-05: 96 Number of HSP's gapped: 31784 Number of HSP's successfully gapped: 96 Length of query: 231 Length of database: 757,237,578 Length adjustment: 122 Effective length of query: 109 Effective length of database: 425,995,500 Effective search space: 46433509500 Effective search space used: 46433509500 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 124 (52.4 bits)