BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0397.0022.p (413 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_384304.1| PUTATIVE PERIPLASMIC BINDING (SIGNAL PEPTIDE) A... 113 9e-24 ref|NP_699703.1| sugar ABC transporter, periplasmic sugar-bindin... 112 2e-23 gb|EAK08675.1| unknown [environmental sequence] 107 5e-22 gb|EAJ96839.1| unknown [environmental sequence] 104 4e-21 ref|NP_631092.1| putative sugar-binding lipoprotein. [Streptomyc... 102 2e-20 >ref|NP_384304.1| PUTATIVE PERIPLASMIC BINDING (SIGNAL PEPTIDE) ABC TRANSPORTER PROTEIN [Sinorhizobium meliloti] emb|CAC41585.1| PUTATIVE PERIPLASMIC BINDING (SIGNAL PEPTIDE) ABC TRANSPORTER PROTEIN [Sinorhizobium meliloti] Length = 419 Score = 113 bits (282), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 97/319 (30%), Positives = 154/319 (48%), Gaps = 17/319 (5%) Query: 48 QTVVDKFQEKYPYITIEHD-KVYDQFREIIRTRIVSKSDMDMLWLFPNQVA-EFSKEDVL 105 + ++ F+ K P I + ++ + ++ + S D++ P + E + L Sbjct: 44 EKLIPAFEAKNPGIKVVFAPSAPTEYNAALNAKLDAGSAGDLITCRPFDASLELYNKKHL 103 Query: 106 MDITGSPWLSNYLDAAVKLGTVD-GK-TYGVPYNSQPILMFYNKTLFDQLGLSIPANWEE 163 D+TG + N+ D A T D GK T+ VP S YNK FDQLGLS+PA EE Sbjct: 104 ADLTGLSGMENFSDVAKSAWTTDDGKATFCVPMASVIHGFIYNKDAFDQLGLSVPATEEE 163 Query: 164 LMAVSEKIKASGT-APMVIGSKDGWATQFITTSQFGLYQHENPDVFAQLASGDKKWTDPE 222 AV EKIKA G PM +G+KD W + G + + L G++K TD Sbjct: 164 FFAVLEKIKADGNYIPMAMGTKDLWEAATMGYQNIGPNYWKGEEGRLALLKGEQKLTDEP 223 Query: 223 FAGYFDGMKELSDKGYLLENSVGLSYDQVAQVFKEGKAAMWPMGEWGYSENFDADFSTFE 282 + F + + D YL + +Y +F G+AA++P G W S F+ + F+ Sbjct: 224 WVEPFRVLAKWKD--YLGDGFEAQTYPDSQNLFTLGRAAIYPAGSWEIS-GFNTQ-AEFK 279 Query: 283 LGAFPIPVNR-GDQPLVTNLVSDNLLVGVSW---SKHQEEIKLFMEFVAQPEMAKIWSDE 338 +GAFP PV + GD T +SD+ +G+ SK+ + K F+ +VA PE A+I+++ Sbjct: 280 MGAFPPPVKKAGD----TCYISDHNDIGIGLNAKSKNADAAKTFLTWVASPEFAEIYANA 335 Query: 339 TKQAVTVKDGTSESYNPLA 357 ++ + +PLA Sbjct: 336 LPGFFSLNSTAVKMSDPLA 354 >ref|NP_699703.1| sugar ABC transporter, periplasmic sugar-binding protein [Brucella suis 1330] gb|AAN33708.1| sugar ABC transporter, periplasmic sugar-binding protein [Brucella suis 1330] Length = 419 Score = 112 bits (279), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 94/319 (29%), Positives = 153/319 (47%), Gaps = 17/319 (5%) Query: 48 QTVVDKFQEKYPYITIEHD-KVYDQFREIIRTRIVSKSDMDMLWLFPNQVA-EFSKEDVL 105 + ++ F+ K+P I I ++ + ++ + S D++ P + E + L Sbjct: 44 EKIIPAFEAKHPGIKINFAPSAPTEYNAALNAKLDAGSGGDLIACRPFDTSLELFNKGKL 103 Query: 106 MDITGSPWLSNYLDAAVKLGTVD--GKTYGVPYNSQPILMFYNKTLFDQLGLSIPANWEE 163 D+T + N+ D A T D KT+ VP S YN+ FD+LGL P E Sbjct: 104 ADLTDLEGMKNFSDVAKSAWTTDDGSKTFCVPMASVIHGFIYNQEAFDKLGLKAPTTEAE 163 Query: 164 LMAVSEKIKASGT-APMVIGSKDGWATQFITTSQFGLYQHENPDVFAQLASGDKKWTDPE 222 V EKIKA GT PM +G+KD W + G + + L +G +K TDPE Sbjct: 164 FFDVLEKIKADGTYIPMAMGTKDMWEAATMGYQNIGPTYWKGEEGRKALIAGKEKLTDPE 223 Query: 223 FAGYFDGMKELSDKGYLLENSVGLSYDQVAQVFKEGKAAMWPMGEWGYSENFDADFSTFE 282 + F + + D YL + +Y +F G+AA++P G W F+ + F+ Sbjct: 224 WVEPFKVLAKWKD--YLGDGFEAQTYPDSQNLFTLGRAAIYPAGSWEIGL-FNTQ-AQFK 279 Query: 283 LGAFPIPV-NRGDQPLVTNLVSDNLLVGV---SWSKHQEEIKLFMEFVAQPEMAKIWSDE 338 +GAFP PV N GD T +SD+ +G+ + SK+ E+ K+F+ +VA PE A+I+++ Sbjct: 280 MGAFPPPVKNVGD----TCYISDHNDIGLGLNAASKNAEQAKVFLNWVASPEFAEIYANA 335 Query: 339 TKQAVTVKDGTSESYNPLA 357 ++ + +PLA Sbjct: 336 LPGFFSLNSTAVKMADPLA 354 >gb|EAK08675.1| unknown [environmental sequence] Length = 328 Score = 107 bits (267), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 80/299 (26%), Positives = 143/299 (47%), Gaps = 24/299 (8%) Query: 48 QTVVDKFQEKYPYITIEHDKVYDQ--FREIIRTRIVSKSDMDMLWLFPNQVAEFSKEDVL 105 + ++ KF+E+ P +T++ + V+D +++ IR + + W N++ F + + Sbjct: 17 EYIIKKFEEENPDVTVKWN-VFDHEGYKQSIRNFLNTDPPDVANWYAGNRMLPFVRAGLF 75 Query: 106 MDITG----SPW----LSNYLDAAVKLGTVDGKTYGVPYNSQPILMFYNKTLFDQLGLSI 157 D++ S W LS ++ A K T+ GK +G+PY ++Y K LF G+S+ Sbjct: 76 EDVSDIWKDSGWVDGNLSENMEHAKKSMTIGGKQWGIPYTYYQWGVYYRKDLFTANGISV 135 Query: 158 PANWEELMAVSEKIKASGTAPMVIGSKDGWATQFITTSQFGLYQHEN-----PDVFAQLA 212 P W++ +A +KA+G P+ IGSK W T G++ + N + L Sbjct: 136 PKTWDDFVAACATLKAAGITPITIGSKYLWTTA-------GVFDYLNLRTNGYEFHMDLT 188 Query: 213 SGDKKWTDPEFAGYFDGMKELSDKGYLLENSVGLSYDQVAQVFKEGKAAMWPMGEWGYSE 272 G +TDP+ FD EL GY LEN LS+ + G+AAM+ MG + + Sbjct: 189 LGKVPYTDPKVQAVFDKWDELVKPGYFLENHAALSWQEALTPMVNGEAAMYVMGNFAVAP 248 Query: 273 NFDADFSTFELGAFPIPVNRGDQPLVTNLVSDNLLVGVSWSKHQEEIKLFMEFVAQPEM 331 +A LG F P P+ +D + + S +K++ + K F+ F+++ ++ Sbjct: 249 LKEAGLRDSNLGFFQFPEITPGIPMAEEAPTDTVHI-PSKAKNKTDAKRFLIFMSRADV 306 >gb|EAJ96839.1| unknown [environmental sequence] Length = 406 Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 76/297 (25%), Positives = 141/297 (47%), Gaps = 16/297 (5%) Query: 48 QTVVDKFQEKYPYITIEHDKV-YDQFREIIRTRIVSKSDMDMLWLFPNQVAEFSKEDVLM 106 + VD F+ +P +T+ ++ ++ ++ IR + +++ +W N++ F + + Sbjct: 37 NSYVDAFKAAHPEVTVVVNEFEHEAYKTAIRNFLTAEAPDVAVWFAGNRMKFFVDQGLFQ 96 Query: 107 DITG---SPWLSNYLDAAVKLGTVDGKTYGVPYNSQPILMFYNKTLFDQLGLSIPANWEE 163 D++ L++ + ++ TVDGK YGVP+ ++Y K LFDQLGL++P +WEE Sbjct: 97 DVSDVWEDAGLNDLMASSKGSLTVDGKQYGVPWGYYQWGVYYRKDLFDQLGLNVPRDWEE 156 Query: 164 LMAVSEKIKASGTAPMVIGSKDGWAT----QFITTSQFGLYQHENPDVFAQLASGDKKWT 219 V +K +G P+ IG+K W ++ G H + L +G + Sbjct: 157 FKWVCAMLKKNGITPITIGTKFLWTAGGWFDYLNLRINGYQFHMD------LTAGKVSYE 210 Query: 220 DPEFAGYFDGMKELSDKGYLLENSVGLSYDQVAQVFKEGKAAMWPMGEWGYSENFDADFS 279 DP FD +EL D GY LE+ S+ G+AAM+ +G + Y ++ Sbjct: 211 DPRLDAVFDHWRELIDPGYFLEDHASFSWQDAQAPQINGEAAMYLIGNF-YVPTLESAGV 269 Query: 280 TFELGAFPIPVNRGDQPLVTNLVSDNLLVGVSWSKHQEEIKLFMEFVAQPEMAKIWS 336 ++ F P + + +D + + S +K+ E+ K F+ F++ E A W+ Sbjct: 270 VDKMDFFQFPTIYEGVGVAEDAPTDTIHI-PSGAKNVEDAKKFLAFLSNAEAATNWA 325 >ref|NP_631092.1| putative sugar-binding lipoprotein. [Streptomyces coelicolor A3(2)] emb|CAB88161.1| putative sugar-binding lipoprotein. [Streptomyces coelicolor A3(2)] Length = 434 Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 103/386 (26%), Positives = 161/386 (41%), Gaps = 29/386 (7%) Query: 44 NPISQTVVDKFQEKYPYITIEHDKVYDQFREIIRTRIVSKSDMDMLWLFPN-QVAEFSKE 102 N I Q +VD F + + ++ ++T I + D+ + + + F K Sbjct: 50 NKIEQQIVDTFNKTSDVKAVLDTIPGADYQTKLQTIINTPQAPDIFYNWGGGSIKPFVKA 109 Query: 103 DVLMD----ITGSPWLS-NYLDAAVKLGTVDGKTYGVP-YNSQPILMFYNKTLFDQLGLS 156 D+L+ I P L N+L + VDGK YG+P +QP+L+F+NK + + G+ Sbjct: 110 DLLLPLDDFIKKDPGLKDNFLPSVFNSAVVDGKPYGIPMRGTQPVLLFHNKKVLEDAGVQ 169 Query: 157 IPANWEELMAVSEKIKASGTAPMVIGSKDGWATQFITTSQFGLYQHENPDVFAQLASGDK 216 P W+EL+A K+K +G P+ +G D W TQ Q+ + P++FA+ GDK Sbjct: 170 PPKTWDELLAAVGKLKDAGVTPIALGGGDVWPTQMWF--QYLYDRIAGPELFAKAIGGDK 227 Query: 217 K-WTDPEFAGYFDGMKELSDKGYLLEN--SVGLSYDQVAQVFKEGKAAMWPMGEWGYSEN 273 W + D + EL D G +N SV + Q+ GKA MG W YS+ Sbjct: 228 SAWESADSKKALDMISELVDSGAFGKNYDSVKYTNGGSVQLVASGKAGFELMGSWYYSQQ 287 Query: 274 F--DADFSTFELGAFPIPVNRGDQPLVTNLVS--DNLLVGVSWSKHQEEIKLFMEFVAQP 329 +F+ +LG P G + N+ +N + +KH E F++ + Sbjct: 288 LTDHKEFAEKDLGYTAFPTVEGGKGDPGNVAGNPNNYYSVMKKTKHPEAAAEFLKLMYSD 347 Query: 330 EMAKIWSDETKQAVT------VKDGTSESYNPLAASL---QPLIDASEAQIFPSMTSSIE 380 E K D T + D + Y L P S Q +P SS Sbjct: 348 EFVKAHLDIGNLPTTTNTDKFIDDSATPEYTRFQYDLVSDAPNFQLSWDQAYPQKASSD- 406 Query: 381 PVMFPIFQQILLKQEVDTAKLLEQMQ 406 M QQ Q +DT ++ MQ Sbjct: 407 --MHKAIQQFFNGQ-LDTDGFIKAMQ 429 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.317 0.133 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 584,667,934 Number of extensions: 24183851 Number of successful extensions: 62534 Number of sequences better than 1.0e-05: 238 Number of HSP's gapped: 62472 Number of HSP's successfully gapped: 238 Length of query: 413 Length of database: 757,237,578 Length adjustment: 128 Effective length of query: 285 Effective length of database: 409,704,906 Effective search space: 116765898210 Effective search space used: 116765898210 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 127 (53.5 bits)