BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0397.0016.p (322 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_471595.1| similar to unknown proteins [Listeria innocua] ... 590 e-167 ref|NP_465684.1| similar to unknown proteins [Listeria monocytog... 585 e-166 ref|NP_693484.1| hypothetical protein OB2563 [Oceanobacillus ihe... 500 e-140 ref|NP_242115.1| BH1249~unknown conserved protein [Bacillus halo... 479 e-134 ref|NP_370743.1| conserved hypothetical protein [Staphylococcus ... 456 e-127 >ref|NP_471595.1| similar to unknown proteins [Listeria innocua] pir||AC1715 hypothetical protein homolog lin2263 [imported] - Listeria innocua (strain Clip11262) emb|CAC97491.1| lin2263 [Listeria innocua] Length = 322 Score = 590 bits (1522), Expect = e-167, Method: Compositional matrix adjust. Identities = 280/322 (86%), Positives = 298/322 (92%) Query: 1 MKLGVFDPVFGSLSLDEMLDKIAAAGLNAVEIGSGGNPGNPHCPTDELLASEAARKAYLE 60 MKLGVF P+F +LSLDEMLDK+ AAGL+AVEIG+GGNPGN HCPTDELLASEAARK YLE Sbjct: 1 MKLGVFTPLFANLSLDEMLDKVKAAGLDAVEIGTGGNPGNHHCPTDELLASEAARKEYLE 60 Query: 61 KFTKRGIMISAFSCHNNPISPDQEEARQGDEILRKSIKLASLMGVAVVNTFSGTAGDSDE 120 KFT RG+ ISAFSCH+NPISP++EEA DEILRKSIKLASLM V VVNTFSGTAGDSD+ Sbjct: 61 KFTSRGLTISAFSCHDNPISPNKEEAAASDEILRKSIKLASLMNVPVVNTFSGTAGDSDD 120 Query: 121 AKAPNWPVTPWPTVYSDILTWQWEHKLIPYWKEIAQLAEEHGVKIGIELHGGFLCHTPYT 180 AKAPNWPV PWPTVYSDI TWQWE KLIPYWKEI +LA GVKIGIELHGGFLCHTPYT Sbjct: 121 AKAPNWPVIPWPTVYSDIKTWQWETKLIPYWKEIGELAAASGVKIGIELHGGFLCHTPYT 180 Query: 181 ILKLREATGPAIGANLDPSHLWWQGIDPVGAIKILGKAGAIHHFHAKDTYLDQDNINMYG 240 ILKLRE T AIG NLDPSHLWWQGIDPVGAIKILGKAGAIHHFHAKDTYLDQDNINMYG Sbjct: 181 ILKLREETNDAIGVNLDPSHLWWQGIDPVGAIKILGKAGAIHHFHAKDTYLDQDNINMYG 240 Query: 241 LTDMQPYGDVQTRAWTFRSVGCGHSLSEWSNIMSALRTYGYDYVVSIEHEDPLMSVDEGF 300 LTDMQPYGDVQTR+WTFRSVGCGHSL+EWS+IMSALRTYGYDYVVSIEHEDPLMS+DEGF Sbjct: 241 LTDMQPYGDVQTRSWTFRSVGCGHSLTEWSDIMSALRTYGYDYVVSIEHEDPLMSIDEGF 300 Query: 301 YRAVTNLQSILIREQPLDMWWA 322 RAVTNLQSILI+++PLDMWWA Sbjct: 301 DRAVTNLQSILIKDKPLDMWWA 322 >ref|NP_465684.1| similar to unknown proteins [Listeria monocytogenes EGD-e] pir||AH1344 hypothetical protein lmo2160 [imported] - Listeria monocytogenes (strain EGD-e) emb|CAD00238.1| lmo2160 [Listeria monocytogenes] Length = 322 Score = 585 bits (1509), Expect = e-166, Method: Compositional matrix adjust. Identities = 277/322 (86%), Positives = 297/322 (92%) Query: 1 MKLGVFDPVFGSLSLDEMLDKIAAAGLNAVEIGSGGNPGNPHCPTDELLASEAARKAYLE 60 MKLGVF P+F +LSL+EMLDK+ AAGL+AVEIG+GGNPGN HCPTDELLASEAARK YLE Sbjct: 1 MKLGVFTPLFANLSLEEMLDKVKAAGLDAVEIGTGGNPGNHHCPTDELLASEAARKEYLE 60 Query: 61 KFTKRGIMISAFSCHNNPISPDQEEARQGDEILRKSIKLASLMGVAVVNTFSGTAGDSDE 120 KFT RG+ ISAFSCH+NPISP++EEA DEILRKSIKLASLM V VVNTFSGTAGDSD+ Sbjct: 61 KFTSRGLTISAFSCHDNPISPNKEEAAASDEILRKSIKLASLMNVPVVNTFSGTAGDSDD 120 Query: 121 AKAPNWPVTPWPTVYSDILTWQWEHKLIPYWKEIAQLAEEHGVKIGIELHGGFLCHTPYT 180 AKAPNWPV PWPTVYSDI TWQWE KLIPYWKEI +LA GVKIGIELHGGFLCHTPYT Sbjct: 121 AKAPNWPVIPWPTVYSDIKTWQWETKLIPYWKEIGELAAASGVKIGIELHGGFLCHTPYT 180 Query: 181 ILKLREATGPAIGANLDPSHLWWQGIDPVGAIKILGKAGAIHHFHAKDTYLDQDNINMYG 240 ILKLRE T +IG NLDPSHLWWQGIDPVGAIKILGKAGAIHHFHAKDTYLDQDNINMYG Sbjct: 181 ILKLREETNDSIGVNLDPSHLWWQGIDPVGAIKILGKAGAIHHFHAKDTYLDQDNINMYG 240 Query: 241 LTDMQPYGDVQTRAWTFRSVGCGHSLSEWSNIMSALRTYGYDYVVSIEHEDPLMSVDEGF 300 LTDMQPYGDVQTR+WTFRSV CGHSL+EWS+IMSALRTYGYDYVVSIEHEDPLMS+DEGF Sbjct: 241 LTDMQPYGDVQTRSWTFRSVACGHSLTEWSDIMSALRTYGYDYVVSIEHEDPLMSIDEGF 300 Query: 301 YRAVTNLQSILIREQPLDMWWA 322 RAVTNLQSILI+++PLDMWWA Sbjct: 301 DRAVTNLQSILIKDKPLDMWWA 322 >ref|NP_693484.1| hypothetical protein OB2563 [Oceanobacillus iheyensis HTE831] dbj|BAC14519.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 322 Score = 500 bits (1288), Expect = e-140, Method: Compositional matrix adjust. Identities = 231/322 (71%), Positives = 265/322 (82%) Query: 1 MKLGVFDPVFGSLSLDEMLDKIAAAGLNAVEIGSGGNPGNPHCPTDELLASEAARKAYLE 60 MKLGVF +FG S DEMLD + +GL AVEIG+GGNPG HC DELL +E RK + E Sbjct: 1 MKLGVFTVLFGEKSFDEMLDYVQESGLKAVEIGTGGNPGTAHCNVDELLDNEEKRKQFKE 60 Query: 61 KFTKRGIMISAFSCHNNPISPDQEEARQGDEILRKSIKLASLMGVAVVNTFSGTAGDSDE 120 K RG+ ISA SCH+NPISP++E A++ + RK+++LA L+ V VVNTFSGT G + Sbjct: 61 KIDARGLTISALSCHDNPISPNKEHAQKAHDDFRKTVRLAELLEVPVVNTFSGTPGSHEG 120 Query: 121 AKAPNWPVTPWPTVYSDILTWQWEHKLIPYWKEIAQLAEEHGVKIGIELHGGFLCHTPYT 180 +K PNWPVTPWPT YSDIL WQWE KLIPYWKE A+ A+ HGVKIG+ELH GFL HTPYT Sbjct: 121 SKYPNWPVTPWPTEYSDILKWQWEEKLIPYWKEQAEFAKNHGVKIGLELHAGFLVHTPYT 180 Query: 181 ILKLREATGPAIGANLDPSHLWWQGIDPVGAIKILGKAGAIHHFHAKDTYLDQDNINMYG 240 +LKLREAT AIGANLDPSHLWWQGIDPV AIKILGKAGAIHHFHAKDTY+DQDN+NMYG Sbjct: 181 LLKLREATNDAIGANLDPSHLWWQGIDPVAAIKILGKAGAIHHFHAKDTYIDQDNVNMYG 240 Query: 241 LTDMQPYGDVQTRAWTFRSVGCGHSLSEWSNIMSALRTYGYDYVVSIEHEDPLMSVDEGF 300 LTDMQPYGDVQTRAW+FRSVG GHS+ EWSNI+SALRTYGYDYV+SIEHEDP+MS+DEGF Sbjct: 241 LTDMQPYGDVQTRAWSFRSVGYGHSIQEWSNIVSALRTYGYDYVISIEHEDPIMSIDEGF 300 Query: 301 YRAVTNLQSILIREQPLDMWWA 322 AV NL+++ I E P MWWA Sbjct: 301 QAAVKNLKAVNIEESPATMWWA 322 >ref|NP_242115.1| BH1249~unknown conserved protein [Bacillus halodurans] pir||A83806 hypothetical protein BH1249 [imported] - Bacillus halodurans (strain C-125) dbj|BAB04968.1| BH1249~unknown conserved protein [Bacillus halodurans] Length = 322 Score = 479 bits (1233), Expect = e-134, Method: Compositional matrix adjust. Identities = 216/322 (67%), Positives = 260/322 (80%) Query: 1 MKLGVFDPVFGSLSLDEMLDKIAAAGLNAVEIGSGGNPGNPHCPTDELLASEAARKAYLE 60 MKLGVF ++G+LS EMLDK+ AG+ AVEIG+GG PG+ HCP ELL S RK Y E Sbjct: 1 MKLGVFTVLYGNLSFTEMLDKVKGAGVQAVEIGTGGYPGDAHCPRQELLTSAEKRKRYQE 60 Query: 61 KFTKRGIMISAFSCHNNPISPDQEEARQGDEILRKSIKLASLMGVAVVNTFSGTAGDSDE 120 + +RG+++ +FSCH NP+SPD+ ++ D+ LR++I+LA M V VVN FSGTAGD + Sbjct: 61 ELEQRGLLLGSFSCHGNPLSPDEAFRKESDQALRETIELAGKMNVPVVNCFSGTAGDHEG 120 Query: 121 AKAPNWPVTPWPTVYSDILTWQWEHKLIPYWKEIAQLAEEHGVKIGIELHGGFLCHTPYT 180 AK PNWPV PWP Y IL WQWE KLIPYWKEI + AE HGVK+ +ELHGGFL HTPYT Sbjct: 121 AKYPNWPVAPWPNEYRHILEWQWEEKLIPYWKEIGEWAETHGVKVALELHGGFLVHTPYT 180 Query: 181 ILKLREATGPAIGANLDPSHLWWQGIDPVGAIKILGKAGAIHHFHAKDTYLDQDNINMYG 240 +L LR+AT PAIGANLDPSHLWWQGIDPV AIKILG+ GAIHHFHAKDT++DQ+ +NMYG Sbjct: 181 LLTLRKATSPAIGANLDPSHLWWQGIDPVAAIKILGREGAIHHFHAKDTFIDQEQVNMYG 240 Query: 241 LTDMQPYGDVQTRAWTFRSVGCGHSLSEWSNIMSALRTYGYDYVVSIEHEDPLMSVDEGF 300 LTDMQPY +QTRAW FRSVGCGH L EW+ ++SALRTYGYD+V+SIEHEDPLMS+DEGF Sbjct: 241 LTDMQPYTHIQTRAWNFRSVGCGHDLHEWTQMISALRTYGYDHVISIEHEDPLMSIDEGF 300 Query: 301 YRAVTNLQSILIREQPLDMWWA 322 AV NL+ +LI+E+P +MWWA Sbjct: 301 ETAVRNLKPLLIKEKPTEMWWA 322 >ref|NP_370743.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu50] ref|NP_373456.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus N315] pir||G89784 conserved hypothetical protein SA0212 [imported] - Staphylococcus aureus (strain N315) dbj|BAB41434.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus N315] dbj|BAB56381.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu50] Length = 322 Score = 456 bits (1173), Expect = e-127, Method: Compositional matrix adjust. Identities = 206/322 (63%), Positives = 258/322 (80%) Query: 1 MKLGVFDPVFGSLSLDEMLDKIAAAGLNAVEIGSGGNPGNPHCPTDELLASEAARKAYLE 60 MK+GVF +F + ++MLD +A +GL+ +E+G+GGNPG+ C DELL +E R+A+++ Sbjct: 1 MKIGVFSVLFYDKNFEDMLDYVAESGLDMIEVGTGGNPGDKFCKLDELLENEDKRQAFMK 60 Query: 61 KFTKRGIMISAFSCHNNPISPDQEEARQGDEILRKSIKLASLMGVAVVNTFSGTAGDSDE 120 T RG+ IS FSCHNNPISPD EA++ DE LRK+I+LA+L+ V VVNTFSG AG D Sbjct: 61 SITDRGLQISGFSCHNNPISPDPIEAKEADETLRKTIRLANLLDVPVVNTFSGIAGSDDT 120 Query: 121 AKAPNWPVTPWPTVYSDILTWQWEHKLIPYWKEIAQLAEEHGVKIGIELHGGFLCHTPYT 180 AK PNWPVTPWPT YS+I +QW KLIPYW+++A+ A+E VKI IELH GFL HTPYT Sbjct: 121 AKKPNWPVTPWPTAYSEIYDYQWNEKLIPYWQDLAEFAKEQDVKIAIELHAGFLVHTPYT 180 Query: 181 ILKLREATGPAIGANLDPSHLWWQGIDPVGAIKILGKAGAIHHFHAKDTYLDQDNINMYG 240 +LKLREAT IGANLDPSHLWWQGIDP+ AI+ILG+A AIHHFHAKDTY++Q+N+NMYG Sbjct: 181 MLKLREATNEYIGANLDPSHLWWQGIDPIAAIRILGQANAIHHFHAKDTYINQENVNMYG 240 Query: 241 LTDMQPYGDVQTRAWTFRSVGCGHSLSEWSNIMSALRTYGYDYVVSIEHEDPLMSVDEGF 300 LTDMQPYG+V TRAWTFR+VG GHS W++I+S L GYDYV+SIEHEDP+MSV+EGF Sbjct: 241 LTDMQPYGNVATRAWTFRTVGYGHSPYVWADIISQLIINGYDYVLSIEHEDPIMSVEEGF 300 Query: 301 YRAVTNLQSILIREQPLDMWWA 322 +A L+S+ I ++P DMWWA Sbjct: 301 QKACQTLKSVNIYDKPADMWWA 322 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.136 0.432 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 513,491,379 Number of extensions: 21959264 Number of successful extensions: 50850 Number of sequences better than 1.0e-05: 44 Number of HSP's gapped: 50862 Number of HSP's successfully gapped: 44 Length of query: 322 Length of database: 757,237,578 Length adjustment: 126 Effective length of query: 196 Effective length of database: 415,135,104 Effective search space: 81366480384 Effective search space used: 81366480384 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 126 (53.1 bits)