BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0397.0012.p (334 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_242382.1| glucose-resistance amylase regulator [Bacillus ... 355 1e-96 ref|NP_244107.1| transcriptional regulator involved in carbon ca... 285 7e-76 ref|NP_622456.1| Transcriptional regulator [Thermoanaerobacter t... 263 6e-69 ref|NP_622156.1| Transcriptional regulator [Thermoanaerobacter t... 262 8e-69 sp|P46828|CCPA_BACME Glucose-resistance amylase regulator (Catab... 261 2e-68 >ref|NP_242382.1| glucose-resistance amylase regulator [Bacillus halodurans] pir||D83839 glucose-resistance amylase regulator BH1516 [imported] - Bacillus halodurans (strain C-125) dbj|BAB05235.1| glucose-resistance amylase regulator [Bacillus halodurans] Length = 343 Score = 355 bits (910), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 173/333 (51%), Positives = 238/333 (71%), Gaps = 2/333 (0%) Query: 1 MN-PTIKDVAQKANVSIATVSRVLNNLTGYSDKTKQKVNQAIKELGYQPNAIARGLINKR 59 MN PTIKDVA++ANVSIATVSR+LN GYS+KTKQ V + I+++GY PNA+ARGLINK+ Sbjct: 1 MNRPTIKDVAREANVSIATVSRILNKGVGYSEKTKQHVLETIEKMGYHPNAVARGLINKK 60 Query: 60 TQTIGVMFPKVSSAFSSDLLHGIDEFAHDSNYSVVVCNTDNDGKRTMKYLQLLREKQVDG 119 T +IGV+FP VS S+ +L GI+E A SV+VCNT +D K+TM YL L+EKQVDG Sbjct: 61 TDSIGVLFPNVSGLISAQILQGIEEVAQSHGISVIVCNTASDHKKTMDYLTFLQEKQVDG 120 Query: 120 IIFSSEVLSKEYYEVLESMKIPVVLVSSQTDFAKVPYVKVDDYQAVYDAIQFLISKGHRK 179 ++F S++L+K+Y E ++ M +P++ +S+ ++ VPYVKVDD A YDA+++LI KGH Sbjct: 121 LLFISQLLTKDYREFIKKMGVPIITISAFSETNDVPYVKVDDEAASYDAVRYLIEKGHTD 180 Query: 180 IAMISGTKGDPIAGTPRVQGYRKALEANGIAFDSSRLVYGD-FSFESGSRAMEALLRKAG 238 I MISG DP+AG PR+QGY++AL + F +++ + F FE G A + LL+ Sbjct: 181 IGMISGPPTDPLAGHPRIQGYKRALREADLPFIETKMTWHKGFYFEDGQVAFQKLLKSHP 240 Query: 239 EVTAVFAASDEMAIGALSSALKHGLNVPEDISIMGYDDLKPAQMVTPPLTTVRQPLYEMG 298 +TA+FAASDE+AI A+SSA G+ VP +S++GYDD K A+M PPLTTV QP EMG Sbjct: 241 SITALFAASDELAISAVSSAYHLGIRVPHQLSVIGYDDTKLAKMSIPPLTTVSQPFEEMG 300 Query: 299 KIASEKLIGMIETGEIAANRIMAHSIVERQTVR 331 A++KLI I++ E + M H I ER++V+ Sbjct: 301 AQATKKLIDSIQSREPNTSLTMPHRIAERESVK 333 >ref|NP_244107.1| transcriptional regulator involved in carbon catabolite control [Bacillus halodurans] pir||A84055 transcription regulator involved in carbon catabolite control ccpA [imported] - Bacillus halodurans (strain C-125) dbj|BAB06960.1| transcriptional regulator involved in carbon catabolite control [Bacillus halodurans] Length = 333 Score = 285 bits (730), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 139/332 (41%), Positives = 217/332 (65%), Gaps = 1/332 (0%) Query: 1 MNPTIKDVAQKANVSIATVSRVLNNLTGYSDKTKQKVNQAIKELGYQPNAIARGLINKRT 60 MN TI DVA++A VS+ATVSRV+N T++KV +AI+ LGY+PNA+ARGL +KRT Sbjct: 1 MNTTIYDVAREAGVSMATVSRVVNGNPNVKPATRKKVLEAIERLGYRPNAVARGLASKRT 60 Query: 61 QTIGVMFPKVSSAFSSDLLHGIDEFAHDSNYSVVVCNTDNDGKRTMKYLQLLREKQVDGI 120 T+GV+ P +SS F ++L GI++ A Y++++CN+D + ++ + + L EKQVDGI Sbjct: 61 TTVGVVIPDISSIFFAELARGIEDIATMYKYNIILCNSDQNKEKEIHLINTLLEKQVDGI 120 Query: 121 IFSSEVLSKEYYEVLESMKIPVVLVSSQTDFAKVPYVKVDDYQAVYDAIQFLISKGHRKI 180 +F ++ E+ E + +PVVL ++ ++P V +D QA +DA+ +LI KGH I Sbjct: 121 VFMGGEITNEHAEEFKRAHVPVVLAATLDAEKEIPSVNIDYKQAAFDAVTYLIEKGHTSI 180 Query: 181 AMISGTKGDPIAGTPRVQGYRKALEANGIAFDSSRLVYGDFSFESGSRAMEALLRKAGEV 240 M+SG+ DP+ G + GYR+ALE G+AFD S +V GD++++SG AM + Sbjct: 181 GMVSGSLEDPVNGYQKYAGYREALEERGVAFDESMVVIGDYTYDSGIDAMNVFTKLEKRP 240 Query: 241 TAVFAASDEMAIGALSSALKHGLNVPEDISIMGYDDLKPAQMVTPPLTTVRQPLYEMGKI 300 TA+F A+DEMA+G + A HGLN+P+DI ++G+D+ + A MV P L+TV QP+Y++G + Sbjct: 241 TAIFVATDEMALGVIHGAQDHGLNIPDDIEVIGFDNTRLATMVRPTLSTVVQPIYDIGAV 300 Query: 301 ASEKLIGMIETGEIAANRI-MAHSIVERQTVR 331 + L + E++ + + + H I RQ+ R Sbjct: 301 SMRLLTKYMNKEEVSEHIVELPHRIEFRQSTR 332 >ref|NP_622456.1| Transcriptional regulator [Thermoanaerobacter tengcongensis] gb|AAM24060.1| Transcriptional regulator [Thermoanaerobacter tengcongensis] Length = 337 Score = 263 bits (671), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 132/334 (39%), Positives = 215/334 (64%), Gaps = 5/334 (1%) Query: 4 TIKDVAQKANVSIATVSRVLNNLTGYSDKTKQKVNQAIKELGYQPNAIARGLINKRTQTI 63 TI DVA+ A VSIATVSRV NN S+KT++KV +A +ELGY+P+ AR L K+T TI Sbjct: 3 TIDDVAKLAGVSIATVSRVFNNSPWVSEKTREKVLKAAEELGYKPSMPARSLAMKKTNTI 62 Query: 64 GVMFPKVSSAFSSDLLHGIDEFAHDSNYSVVVCNTDNDGKRTMKYLQLLREKQVDGIIFS 123 G++ P +S+ + ++++ GI++ + Y++++CN DN ++ +Y+ +L+ + VDG+IF Sbjct: 63 GLIVPDISNPYYAEVVRGIEDVCNIYKYNIILCNADNKREKEFQYIDMLKNRWVDGVIFH 122 Query: 124 SEVLSKEYYEVLESMKIPVVLVSSQTDFAKVPYVKVDDYQAVYDAIQFLISKGHRKIAMI 183 + S+E+YEV ++ + VVL T F VPYV +D+++A YDA+ +LIS GH++I +I Sbjct: 123 CDYFSEEHYEVFKNSNLKVVLAGRTTKF-DVPYVGIDNFKAAYDAVNYLISLGHKRIGII 181 Query: 184 SGTKGD---PIAGTPRVQGYRKALEANGIAFDSSRLVYGDFSFESGSRAMEALLRKAGEV 240 G D I R+ GY++AL NG+ + +F ++ G A +L+ Sbjct: 182 HGPLDDMKETIDSVDRLNGYKQALIDNGLPIYDELVKEANFKYKGGYSAAMEMLKGNVRP 241 Query: 241 TAVFAASDEMAIGALSSALKHGLNVPEDISIMGYDDLKPAQMVTPPLTTVRQPLYEMGKI 300 TA+FA SD MA+GA+++ GL+ PED+S++G+D++ ++ PPLTTV QP+YE+G I Sbjct: 242 TAIFAISDIMAMGAINAVFDKGLSCPEDVSVIGFDNIDLSEATRPPLTTVSQPMYEIGAI 301 Query: 301 ASEKLIGMIETGEIAANR-IMAHSIVERQTVRTL 333 A+ LI +I + +++ I+ H +V R +V L Sbjct: 302 AARMLIKIINGENLESSQVILKHKLVLRNSVIPL 335 >ref|NP_622156.1| Transcriptional regulator [Thermoanaerobacter tengcongensis] gb|AAM23760.1| Transcriptional regulator [Thermoanaerobacter tengcongensis] Length = 337 Score = 262 bits (670), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 142/332 (42%), Positives = 218/332 (65%), Gaps = 7/332 (2%) Query: 1 MNPTIKDVAQKANVSIATVSRVLNNLTGYSDKTKQKVNQAIKELGYQPNAIARGLINKRT 60 M TIKDVA++A VSIATVSRVLNN +++T+Q+V +AIK+ GY+PNA+AR L ++T Sbjct: 1 MGATIKDVAREAKVSIATVSRVLNNSAVVTEETRQRVLEAIKKTGYKPNALARSLKIQKT 60 Query: 61 QTIGVMFPKVSSAFSSDLLHGIDEFAHDSNYSVVVCNTDNDGKRTMKYLQLLREKQVDGI 120 TIG++ P +SS F +++ GI++ A NY++ +CNTD + +KY+++L EKQVDGI Sbjct: 61 HTIGLIIPDISSTFYPEVVRGIEDIAAMYNYNIFLCNTDQKEDKEIKYIEILGEKQVDGI 120 Query: 121 IFSSEVLSKEYYEVLESMKIPVVLVSSQTDFAKVPYVKVDDYQAVYDAIQFLISKGHRKI 180 IF +V+ + K+PVVL +Q + P V +D+ +A YDA+++LIS GH+KI Sbjct: 121 IFMGDVVRDSVIQAFNEFKVPVVLAGTQDKEKRYPSVMIDNEKAAYDAVKYLISLGHKKI 180 Query: 181 AMISGTKGDPIAGTPRVQGYRKALEANGIAFDSSRLVYGDFSFESGSRAMEALLRKAGEV 240 MI+G+ DPIAG R++GY++ALE +GI +D +V G+F AM LL +V Sbjct: 181 GMIAGSMQDPIAGLQRIEGYKRALEEHGIKYDPELVVEGEFKTRKAYLAMLKLLEH--KV 238 Query: 241 TAVFAASDEMAIGALSSALKHGLNVPEDISIMGYDDLKPAQMVTPPLTTVRQPLYEMGKI 300 TAVFAASD+MA A+++ L VP+DI ++G+D+ + + P +TT+ QP Y++G + Sbjct: 239 TAVFAASDDMAAAAINAIFDSNLRVPDDIHVVGFDNTYISTIFRPTITTILQPAYDIGAV 298 Query: 301 ASE---KLIGMIETGEIAANRIMAHSIVERQT 329 A KL+G E+ I+ H ++ R++ Sbjct: 299 AMRLLTKLLGKEPIEEMHV--ILPHQLIVRES 328 >sp|P46828|CCPA_BACME Glucose-resistance amylase regulator (Catabolite control protein) pir||I39800 catabolite control protein - Bacillus megaterium gb|AAA22295.1| catabolite control protein Length = 332 Score = 261 bits (666), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 133/332 (40%), Positives = 215/332 (64%), Gaps = 1/332 (0%) Query: 1 MNPTIKDVAQKANVSIATVSRVLNNLTGYSDKTKQKVNQAIKELGYQPNAIARGLINKRT 60 MN TI DVA++A+VS+ATVSRV+N T++KV + I+ LGY+PNA+ARGL +K+T Sbjct: 1 MNVTIYDVAREASVSMATVSRVVNGNPNVKPSTRKKVLETIERLGYRPNAVARGLASKKT 60 Query: 61 QTIGVMFPKVSSAFSSDLLHGIDEFAHDSNYSVVVCNTDNDGKRTMKYLQLLREKQVDGI 120 T+GV+ P +S+ F ++L GI++ A Y++++ N+D + + + L + KQVDGI Sbjct: 61 TTVGVIIPDISNIFYAELARGIEDIATMYKYNIILSNSDQNQDKELHLLNNMLGKQVDGI 120 Query: 121 IFSSEVLSKEYYEVLESMKIPVVLVSSQTDFAKVPYVKVDDYQAVYDAIQFLISKGHRKI 180 IF S +++E+ E L+ +PVVL +S ++P V +D QA +DA+Q LI GH+ I Sbjct: 121 IFMSGNVTEEHVEELKKSPVPVVLAASIESTNQIPSVTIDYEQAAFDAVQSLIDSGHKNI 180 Query: 181 AMISGTKGDPIAGTPRVQGYRKALEANGIAFDSSRLVYGDFSFESGSRAMEALLRKAGEV 240 A +SGT +PI +V+GY++AL +G+ S +V GD++++SG A+E LL + + Sbjct: 181 AFVSGTLEEPINHAKKVKGYKRALTESGLPVRDSYIVEGDYTYDSGIEAVEKLLEEDEKP 240 Query: 241 TAVFAASDEMAIGALSSALKHGLNVPEDISIMGYDDLKPAQMVTPPLTTVRQPLYEMGKI 300 TA+F +DEMA+G + A GLNVP D+ I+G+D+ + + MV P LT+V QP+Y++G + Sbjct: 241 TAIFVGTDEMALGVIHGAQDRGLNVPNDLEIIGFDNTRLSTMVRPQLTSVVQPMYDIGAV 300 Query: 301 ASEKLIGMIETGEIAANRI-MAHSIVERQTVR 331 A L + + ++ + + H I RQ+ + Sbjct: 301 AMRLLTKYMNKETVDSSIVQLPHRIEFRQSTK 332 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.316 0.132 0.359 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 435,816,033 Number of extensions: 16782916 Number of successful extensions: 55351 Number of sequences better than 1.0e-05: 1269 Number of HSP's gapped: 53564 Number of HSP's successfully gapped: 1275 Length of query: 334 Length of database: 757,237,578 Length adjustment: 126 Effective length of query: 208 Effective length of database: 415,135,104 Effective search space: 86348101632 Effective search space used: 86348101632 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 126 (53.1 bits)