BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0397.0009.p (273 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00121123.1| hypothetical protein [Bifidobacterium longum ... 297 1e-79 ref|ZP_00070453.1| COG0395: ABC-type sugar transport system, per... 238 1e-61 ref|NP_359302.1| ABC transporter membrane spanning permease - mu... 197 1e-49 ref|NP_346326.1| sugar ABC transporter, permease protein [Strept... 197 1e-49 ref|NP_721289.1| multiple sugar-binding ABC transporter, permeas... 187 3e-46 >ref|ZP_00121123.1| hypothetical protein [Bifidobacterium longum DJO10A] ref|NP_696680.1| sugar permease of ABC transporter system [Bifidobacterium longum NCC2705] gb|AAN25316.1| sugar permease of ABC transporter system [Bifidobacterium longum NCC2705] Length = 288 Score = 297 bits (761), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 150/267 (56%), Positives = 201/267 (75%), Gaps = 2/267 (0%) Query: 7 NWPVTVIIALCSLLILFPLYMTIAIALKNPEEMARSIFSLPTGLHFENFANAIKATNFFN 66 NW +T +A+ SL IL PLY TI ALK P E F+LPT + NFA+A N+ Sbjct: 24 NWWLTAAVAVLSLTILIPLYFTIVTALKTPAEAGT--FALPTSWQWHNFADASAKVNYPK 81 Query: 67 ALGNSATITVTAVIFILLTNSMVAYAIARNMNKRFFKTLYFYFISAMFIPFQIIMLPVVK 126 A NSA ITV AV+ LLTN+ VAYA+ARNM+KRFF+ LY++FI+AMF+PF ++MLP+ K Sbjct: 82 AALNSAIITVAAVVLTLLTNTFVAYAVARNMDKRFFRFLYYFFIAAMFVPFPVVMLPIAK 141 Query: 127 VTTDLHMNNIPGLIILYIVYGLAFNVFVYVGYIRSIPYELEEAATVDGASTWGTFWRIIF 186 LH++N GLIILY V GL N+F+ G+IRSIP LEEAA +DGASTW FW IIF Sbjct: 142 QMGSLHLDNQVGLIILYTVLGLGTNLFIATGFIRSIPVSLEEAARIDGASTWRIFWTIIF 201 Query: 187 PLLAPVNATIGILSCLSTWNDFMLPLILLGNQDSYTLPLVQYVFQGQFSTDFNLAFASYL 246 PL++P+NATI IL+ L WNDF+LPLI+L +Q + T+PL QYVF QF+T++ +AF+SYL Sbjct: 202 PLMSPINATIAILTALWAWNDFLLPLIILTDQSNQTIPLAQYVFSSQFATNYPMAFSSYL 261 Query: 247 LALSPMLIIYLFAQKWIIGGLTQGSIK 273 +A++P+LI+Y+FAQKW++GG+ +G++K Sbjct: 262 MAMAPILIVYIFAQKWVVGGVMRGAVK 288 >ref|ZP_00070453.1| COG0395: ABC-type sugar transport system, permease component [Oenococcus oeni MCW] Length = 224 Score = 238 bits (607), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 115/222 (51%), Positives = 163/222 (73%), Gaps = 1/222 (0%) Query: 53 ENFANAIKATNFFNALGNSATITVTAVIFILLTNSMVAYAIAR-NMNKRFFKTLYFYFIS 111 E+F +A + T+F N+ IT +IF ++TNS AYAI R RFF LY+YFIS Sbjct: 2 EHFTSAWQMTDFPLMFRNTLFITAWNIIFTIITNSAAAYAITRYRKQSRFFNLLYYYFIS 61 Query: 112 AMFIPFQIIMLPVVKVTTDLHMNNIPGLIILYIVYGLAFNVFVYVGYIRSIPYELEEAAT 171 AMFIPF +IMLP+V+ + HM+N G+ LYI++G+ N+F+Y G+++ IP LEEAA Sbjct: 62 AMFIPFNVIMLPLVREVSAFHMDNDFGMTFLYIIFGMPLNIFLYSGFVKQIPVALEEAAV 121 Query: 172 VDGASTWGTFWRIIFPLLAPVNATIGILSCLSTWNDFMLPLILLGNQDSYTLPLVQYVFQ 231 +DGA + F+++IFPL+AP++AT+ ILS + TWNDF++PL+LL + TL L QYVFQ Sbjct: 122 MDGAKPYQVFFKVIFPLMAPMHATVAILSFMWTWNDFLMPLVLLSDPKQQTLQLAQYVFQ 181 Query: 232 GQFSTDFNLAFASYLLALSPMLIIYLFAQKWIIGGLTQGSIK 273 GQFST++NLAFASY+L L+P+LI+Y+F Q++II G+ GS+K Sbjct: 182 GQFSTNYNLAFASYVLVLAPVLIMYVFFQRYIISGVLTGSVK 223 >ref|NP_359302.1| ABC transporter membrane spanning permease - multiple sugars [Streptococcus pneumoniae R6] pir||D98085 hypothetical protein msmG [imported] - Streptococcus pneumoniae (strain R6) gb|AAL00513.1| ABC transporter membrane spanning permease - multiple sugars [Streptococcus pneumoniae R6] Length = 277 Score = 197 bits (502), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 110/266 (41%), Positives = 177/266 (66%), Gaps = 6/266 (2%) Query: 12 VIIALCSLLILFPLYMTIAIALKNPEEMARSIFSLPTGLHFENFANAIKATNFFNALGNS 71 +++ L S+LIL PL T+ + K +++ + F PT ++NF+ + A NS Sbjct: 14 ILLILGSVLILVPLLATLFSSFKPTKDIVDNFFGFPTNFTWDNFSRLL-ADGIGGYYWNS 72 Query: 72 ATITVTAVIFILLTNSMVAYAIARNMNKR-FFKTLYFYFISAMFIPFQIIMLPVVKVTTD 130 ITV +++ +++ M AY+IARNM+KR F +Y I +F+PFQ+IM+P+ + + Sbjct: 73 VVITVLSLLAVMIFIPMAAYSIARNMSKRKAFTIMYTLLILGIFVPFQVIMIPITVMMSK 132 Query: 131 LHMNNIPGLIILYIVYGLAFNVFVYVGYIR-SIPYELEEAATVDGASTWGTFWRIIFPLL 189 L + N GLI+LY+ Y + +F+YVGYI+ SIP L+EAA +DGA+ + T++RIIFP++ Sbjct: 133 LGLANTFGLILLYLTYAIPQTLFLYVGYIKISIPESLDEAAEIDGANQFTTYFRIIFPMM 192 Query: 190 APVNATIGILSCLSTWNDFMLPLILLGNQDS--YTLPLVQYVFQGQFSTDFNLAFASYLL 247 P++AT I++ L WNDFMLPL++L N+DS +TLPL QY + GQ+ D+ +FASY++ Sbjct: 193 KPMHATTMIINALWFWNDFMLPLLVL-NRDSKMWTLPLFQYNYAGQYFNDYGPSFASYVV 251 Query: 248 ALSPMLIIYLFAQKWIIGGLTQGSIK 273 + + I+YLF Q+ II G++ G++K Sbjct: 252 GIISITIVYLFFQRHIISGMSNGAVK 277 >ref|NP_346326.1| sugar ABC transporter, permease protein [Streptococcus pneumoniae TIGR4] pir||E95221 sugar ABC transporter, permease protein SP1895 [imported] - Streptococcus pneumoniae (strain TIGR4) gb|AAK75966.1| sugar ABC transporter, permease protein [Streptococcus pneumoniae TIGR4] Length = 278 Score = 197 bits (502), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 110/266 (41%), Positives = 177/266 (66%), Gaps = 6/266 (2%) Query: 12 VIIALCSLLILFPLYMTIAIALKNPEEMARSIFSLPTGLHFENFANAIKATNFFNALGNS 71 +++ L S+LIL PL T+ + K +++ + F PT ++NF+ + A NS Sbjct: 15 ILLILGSVLILVPLLATLFSSFKPTKDIVDNFFGFPTNFTWDNFSRLL-ADGIGGYYWNS 73 Query: 72 ATITVTAVIFILLTNSMVAYAIARNMNKR-FFKTLYFYFISAMFIPFQIIMLPVVKVTTD 130 ITV +++ +++ M AY+IARNM+KR F +Y I +F+PFQ+IM+P+ + + Sbjct: 74 VVITVLSLLAVMIFIPMAAYSIARNMSKRKAFTIMYTLLILGIFVPFQVIMIPITVMMSK 133 Query: 131 LHMNNIPGLIILYIVYGLAFNVFVYVGYIR-SIPYELEEAATVDGASTWGTFWRIIFPLL 189 L + N GLI+LY+ Y + +F+YVGYI+ SIP L+EAA +DGA+ + T++RIIFP++ Sbjct: 134 LGLANTFGLILLYLTYAIPQTLFLYVGYIKISIPESLDEAAEIDGANQFTTYFRIIFPMM 193 Query: 190 APVNATIGILSCLSTWNDFMLPLILLGNQDS--YTLPLVQYVFQGQFSTDFNLAFASYLL 247 P++AT I++ L WNDFMLPL++L N+DS +TLPL QY + GQ+ D+ +FASY++ Sbjct: 194 KPMHATTMIINALWFWNDFMLPLLVL-NRDSKMWTLPLFQYNYAGQYFNDYGPSFASYVV 252 Query: 248 ALSPMLIIYLFAQKWIIGGLTQGSIK 273 + + I+YLF Q+ II G++ G++K Sbjct: 253 GIISITIVYLFFQRHIISGMSNGAVK 278 >ref|NP_721289.1| multiple sugar-binding ABC transporter, permease protein MsmG [Streptococcus mutans UA159] sp|Q00751|MSMG_STRMU Multiple sugar-binding transport system permease protein msmG pir||D42400 membrane protein MsmG - Streptococcus mutans gb|AAA26936.1| membrane protein gb|AAN58595.1| multiple sugar-binding ABC transporter, permease protein MsmG [Streptococcus mutans UA159] Length = 277 Score = 187 bits (474), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 107/266 (40%), Positives = 171/266 (64%), Gaps = 6/266 (2%) Query: 12 VIIALCSLLILFPLYMTIAIALKNPEEMARSIFSLPTGLHFENFANAIKATNFFNALGNS 71 V++ + +LIL PL +T+ + K +++ F+ P + +N+ + A NS Sbjct: 14 VLLTVGGILILIPLMVTVFSSFKKTKDIMNHFFAFPNPITLDNYKRLL-ADGVGGYFWNS 72 Query: 72 ATITVTAVIFILLTNSMVAYAIARNMNKR-FFKTLYFYFISAMFIPFQIIMLPVVKVTTD 130 ITV +V+ ++L AY+IARNM++R F +Y I +F+PFQ+IM+P+ + + Sbjct: 73 TVITVLSVLVVMLFIPAAAYSIARNMSRRKAFNIMYSLLILGIFVPFQVIMIPITVMMSK 132 Query: 131 LHMNNIPGLIILYIVYGLAFNVFVYVGYIR-SIPYELEEAATVDGASTWGTFWRIIFPLL 189 L + N+ GLIILY+ Y + +F+YVGYI+ S+P L+EAA +DGA T+ +IIFP+L Sbjct: 133 LGLANMWGLIILYLTYAIPQTLFLYVGYIKLSVPDSLDEAAEIDGADKLTTYRKIIFPML 192 Query: 190 APVNATIGILSCLSTWNDFMLPLILLGNQDS--YTLPLVQYVFQGQFSTDFNLAFASYLL 247 P++AT I++ L WNDFMLPL++L N+DS +TLPL QY + GQ+ D+ +FASY++ Sbjct: 193 KPMHATTLIINALWFWNDFMLPLLIL-NKDSSMWTLPLFQYNYSGQYFNDYGPSFASYIV 251 Query: 248 ALSPMLIIYLFAQKWIIGGLTQGSIK 273 + + I+YL QK II G++ G++K Sbjct: 252 GIITITIVYLIFQKHIIAGMSNGAVK 277 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.330 0.142 0.434 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 384,222,230 Number of extensions: 15456048 Number of successful extensions: 60147 Number of sequences better than 1.0e-05: 1520 Number of HSP's gapped: 58870 Number of HSP's successfully gapped: 1522 Length of query: 273 Length of database: 757,237,578 Length adjustment: 124 Effective length of query: 149 Effective length of database: 420,565,302 Effective search space: 62664229998 Effective search space used: 62664229998 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 125 (52.8 bits)