BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0394.0004.p
         (73 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_782408.1| ABC transporter ATP-binding protein [Clostridiu...   112   3e-24
ref|NP_782040.1| transporter [Clostridium tetani E88] >gi|282035...   109   2e-23
ref|NP_347093.1| ABC-transporter, ATP-binding protein [Clostridi...   100   1e-20
ref|ZP_00060008.1| COG1136: ABC-type antimicrobial peptide trans...    98   5e-20
ref|NP_349338.1| ABC transporter, ATPase component [Clostridium ...    96   3e-19

>ref|NP_782408.1| ABC transporter ATP-binding protein [Clostridium tetani E88]
 gb|AAO36345.1| ABC transporter ATP-binding protein [Clostridium tetani E88]
          Length = 226

 Score =  112 bits (279), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 53/65 (81%), Positives = 59/65 (90%)

Query: 3   LLGLTERRQHLPSELSGGQQQRTAIGRALINKPSIILADEPTGNLDSKNSKEIMDLLTFS 62
           +LGL ER  HLPSELSGGQQQR +IGRALINKPSIILADEPTGNLDSKNSKE+++LL +S
Sbjct: 128 MLGLKERITHLPSELSGGQQQRVSIGRALINKPSIILADEPTGNLDSKNSKEVIELLKYS 187

Query: 63  VKKYN 67
            KKYN
Sbjct: 188 SKKYN 192


>ref|NP_782040.1| transporter [Clostridium tetani E88]
 gb|AAO35977.1| transporter [Clostridium tetani E88]
          Length = 227

 Score =  109 bits (272), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 52/67 (77%), Positives = 59/67 (88%)

Query: 1   MGLLGLTERRQHLPSELSGGQQQRTAIGRALINKPSIILADEPTGNLDSKNSKEIMDLLT 60
           + +LGL  RR HLPSELSGGQQQR +IGRAL  KPSIILADEPTGNLDSKNSKEI++LL 
Sbjct: 126 INILGLQNRRNHLPSELSGGQQQRVSIGRALAYKPSIILADEPTGNLDSKNSKEIIELLR 185

Query: 61  FSVKKYN 67
           FSV+KY+
Sbjct: 186 FSVQKYH 192


>ref|NP_347093.1| ABC-transporter, ATP-binding protein [Clostridium acetobutylicum]
 pir||F96955 ABC-transporter, ATP-binding protein CAC0453 [imported] -
           Clostridium acetobutylicum
 gb|AAK78433.1| ABC-transporter, ATP-binding protein [Clostridium acetobutylicum]
          Length = 227

 Score =  100 bits (248), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 46/65 (70%), Positives = 55/65 (84%)

Query: 3   LLGLTERRQHLPSELSGGQQQRTAIGRALINKPSIILADEPTGNLDSKNSKEIMDLLTFS 62
           +L L ++R H P ELSGGQQQRTAIGRAL  KPSIILADEPTGNLD+KNS+ + +LL FS
Sbjct: 128 ILNLKDKRNHFPEELSGGQQQRTAIGRALSYKPSIILADEPTGNLDTKNSRAVAELLRFS 187

Query: 63  VKKYN 67
           V+K+N
Sbjct: 188 VEKFN 192


>ref|ZP_00060008.1| COG1136: ABC-type antimicrobial peptide transport system, ATPase
           component [Clostridium thermocellum ATCC 27405]
          Length = 231

 Score = 98.2 bits (243), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 46/64 (71%), Positives = 54/64 (84%)

Query: 4   LGLTERRQHLPSELSGGQQQRTAIGRALINKPSIILADEPTGNLDSKNSKEIMDLLTFSV 63
           L L  R  HLP++LSGGQQQR +IGRALIN PS++LADEPTGNLDSKNS+EI++LL  S 
Sbjct: 133 LNLKGRENHLPNQLSGGQQQRVSIGRALINAPSVVLADEPTGNLDSKNSQEIVELLKLSN 192

Query: 64  KKYN 67
           KKYN
Sbjct: 193 KKYN 196


>ref|NP_349338.1| ABC transporter, ATPase component [Clostridium acetobutylicum]
 pir||C97236 ABC transporter, ATPase component CAC2732 [imported] - Clostridium
           acetobutylicum
 gb|AAK80678.1| ABC transporter, ATPase component [Clostridium acetobutylicum]
          Length = 218

 Score = 95.5 bits (236), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 46/64 (71%), Positives = 53/64 (82%)

Query: 3   LLGLTERRQHLPSELSGGQQQRTAIGRALINKPSIILADEPTGNLDSKNSKEIMDLLTFS 62
           +LGLT+R  H P++LSGGQQQR AIGRALI KPSIILADEPTGNLD KN+K  +DLL  S
Sbjct: 128 MLGLTQRLNHFPNQLSGGQQQRVAIGRALIYKPSIILADEPTGNLDRKNTKTTIDLLKRS 187

Query: 63  VKKY 66
            K+Y
Sbjct: 188 NKEY 191


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.313    0.132    0.359 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 100,018,378
Number of extensions: 3346860
Number of successful extensions: 31112
Number of sequences better than 1.0e-05: 4937
Number of HSP's gapped: 31218
Number of HSP's successfully gapped: 4976
Length of query: 73
Length of database: 757,237,578
Length adjustment: 44
Effective length of query: 29
Effective length of database: 637,773,222
Effective search space: 18495423438
Effective search space used: 18495423438
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 120 (50.8 bits)