BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0391.0039.p (198 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_693176.1| cytochrome aa3 quinol oxidase subunit III [Ocea... 242 3e-63 ref|NP_391694.1| cytochrome aa3 quinol oxidase (subunit III) [Ba... 202 4e-51 ref|NP_654650.1| COX3, Cytochrome c oxidase subunit III [Bacillu... 191 9e-48 ref|NP_242932.1| cytochrome aa3 quinol oxidase subunit III [Baci... 189 4e-47 ref|NP_463548.1| AA3-600 quinol oxidase subunit III [Listeria mo... 182 5e-45 >ref|NP_693176.1| cytochrome aa3 quinol oxidase subunit III [Oceanobacillus iheyensis HTE831] dbj|BAC14211.1| cytochrome aa3 quinol oxidase subunit III [Oceanobacillus iheyensis HTE831] Length = 199 Score = 242 bits (618), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 121/199 (60%), Positives = 150/199 (75%), Gaps = 1/199 (0%) Query: 1 MKIDASKPLEYSTEENSNKIFGFWVFLGAEIPLFATLFTVYFVMVDR-FASGPSGSELFE 59 MKID+++PLEYSTE+N I GFW+FLGAEI LFATLFT YF+ R SGPS +E+FE Sbjct: 1 MKIDSNQPLEYSTEQNKMNILGFWIFLGAEIMLFATLFTSYFIYEGRGVGSGPSSAEIFE 60 Query: 60 IGPVLIETFLLLTSSFTIGLAVHAMRLGYKKAMMVLMAITLLMGLGFIGIEIDEFFTYVH 119 IGPV+I T +LLTSSFTIGLA+HAMR+ KAM+ + +TL++G F+ +EI EF + H Sbjct: 61 IGPVIINTMILLTSSFTIGLAIHAMRIQRTKAMIGFLIVTLVLGAAFVSVEIYEFIHFYH 120 Query: 120 EGATLQTXXXXXXXXXXXXTHGAHVSFGFLWGTAIMIQVWRQGINPATANKAFIFSLFWH 179 GATLQT THGAHV+FG WGT I+IQ+ + G+ TANK+FIFSL+WH Sbjct: 121 IGATLQTSGFTATLFTTLATHGAHVTFGLFWGTMIIIQLVKHGLTAQTANKSFIFSLYWH 180 Query: 180 FLDVVWIFIFSFVYLKGLM 198 FLDV+WIFIFSFVYLKG+M Sbjct: 181 FLDVMWIFIFSFVYLKGMM 199 >ref|NP_391694.1| cytochrome aa3 quinol oxidase (subunit III) [Bacillus subtilis] sp|P34958|QOX3_BACSU Quinol oxidase polypeptide III (Quinol oxidase aa3-600, subunit qoxC) (Oxidase aa(3)-600 subunit 3) pir||C38129 bo-type ubiquinol oxidase (EC 1.10.3.-) chain III qoxC - Bacillus subtilis gb|AAA22688.1| quinol oxidase emb|CAA51595.1| ipa-39d qoxC [Bacillus subtilis] emb|CAB15841.1| cytochrome aa3 quinol oxidase (subunit III) [Bacillus subtilis subsp. subtilis str. 168] Length = 204 Score = 202 bits (513), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 103/194 (53%), Positives = 132/194 (68%) Query: 4 DASKPLEYSTEENSNKIFGFWVFLGAEIPLFATLFTVYFVMVDRFASGPSGSELFEIGPV 63 +++ P+EY +E I GFW+FLGAEI LF+TLF +FV+ +R A G ELFE+ V Sbjct: 8 NSNAPMEYQSETGRLNILGFWIFLGAEIVLFSTLFATFFVLKNRTAGGVLPDELFEVNLV 67 Query: 64 LIETFLLLTSSFTIGLAVHAMRLGYKKAMMVLMAITLLMGLGFIGIEIDEFFTYVHEGAT 123 +I TFLLL SSFT G+AVH MR G K +++ ITLL+G GF+G EI+EF YVHEGA Sbjct: 68 MIMTFLLLISSFTCGIAVHEMRRGSLKGVVIWTIITLLLGAGFVGCEINEFVHYVHEGAA 127 Query: 124 LQTXXXXXXXXXXXXTHGAHVSFGFLWGTAIMIQVWRQGINPATANKAFIFSLFWHFLDV 183 L T THG HV+ G W T I+IQ+ ++G+ P T++K FI SL+WHFLDV Sbjct: 128 LSTSAFWSGFFVLLGTHGTHVTIGIFWITGILIQLKKRGLTPQTSSKIFISSLYWHFLDV 187 Query: 184 VWIFIFSFVYLKGL 197 VWIFIF+ VYL GL Sbjct: 188 VWIFIFTGVYLMGL 201 >ref|NP_654650.1| COX3, Cytochrome c oxidase subunit III [Bacillus anthracis A2012] ref|NP_830509.1| Cytochrome aa3 quinol oxidase polypeptide III [Bacillus cereus ATCC 14579] ref|NP_843228.1| quinol oxidase, subunit III [Bacillus anthracis str. Ames] ref|NP_977095.1| quinol oxidase, subunit III [Bacillus cereus ATCC 10987] gb|AAP07710.1| Cytochrome aa3 quinol oxidase polypeptide III [Bacillus cereus ATCC 14579] gb|AAP24714.1| quinol oxidase, subunit III [Bacillus anthracis str. Ames] gb|AAS39703.1| quinol oxidase, subunit III [Bacillus cereus ATCC 10987] Length = 200 Score = 191 bits (485), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 99/196 (50%), Positives = 136/196 (69%) Query: 3 IDASKPLEYSTEENSNKIFGFWVFLGAEIPLFATLFTVYFVMVDRFASGPSGSELFEIGP 62 +D S PLEY +E++ I GFW+FLGAEI LFATLF Y V+ R A GP+ ++LFE+ Sbjct: 4 LDKSLPLEYQSEQSRLNILGFWIFLGAEIMLFATLFASYLVLAGRTADGPTPAQLFELKT 63 Query: 63 VLIETFLLLTSSFTIGLAVHAMRLGYKKAMMVLMAITLLMGLGFIGIEIDEFFTYVHEGA 122 +LI+T LLLTSSFT G+ +H MR +KAM+ +TLL+G GF+ EI+EF Y+ EGA Sbjct: 64 LLIQTLLLLTSSFTCGIVIHEMRKHNQKAMLGWFVLTLLLGAGFLFFEIEEFIMYIGEGA 123 Query: 123 TLQTXXXXXXXXXXXXTHGAHVSFGFLWGTAIMIQVWRQGINPATANKAFIFSLFWHFLD 182 T+QT THGAHV+ G +W ++IQ+ ++G+ P TA K FI SL+WHFLD Sbjct: 124 TIQTSAFLSGFFVLLGTHGAHVTGGIIWAICVIIQILKRGLTPVTARKVFIISLYWHFLD 183 Query: 183 VVWIFIFSFVYLKGLM 198 +VW+FI++ VYL G++ Sbjct: 184 LVWVFIYTLVYLNGMV 199 >ref|NP_242932.1| cytochrome aa3 quinol oxidase subunit III [Bacillus halodurans] pir||B83908 cytochrome aa3 quinol oxidase subunit III qoxC [imported] - Bacillus halodurans (strain C-125) dbj|BAB05785.1| cytochrome aa3 quinol oxidase subunit III [Bacillus halodurans] Length = 204 Score = 189 bits (479), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 105/195 (53%), Positives = 130/195 (66%) Query: 3 IDASKPLEYSTEENSNKIFGFWVFLGAEIPLFATLFTVYFVMVDRFASGPSGSELFEIGP 62 I+ ++PLEY + E N I GFW+FLGAE LFATLF YFV+VDR A ++LF++ Sbjct: 7 INPNQPLEYQSAEGRNNILGFWIFLGAEFALFATLFASYFVLVDRNADAVRAADLFDLNL 66 Query: 63 VLIETFLLLTSSFTIGLAVHAMRLGYKKAMMVLMAITLLMGLGFIGIEIDEFFTYVHEGA 122 VLI TFLLLTSSFT GLA+H MR G M V + +TLL+GLGF+G EI EF Y HEGA Sbjct: 67 VLIMTFLLLTSSFTCGLAIHEMRAGRMNRMFVWIGLTLLLGLGFVGFEIYEFVHYAHEGA 126 Query: 123 TLQTXXXXXXXXXXXXTHGAHVSFGFLWGTAIMIQVWRQGINPATANKAFIFSLFWHFLD 182 TL THG HVS G W ++IQ+ ++G+ P T +K FI SL+WHFLD Sbjct: 127 TLSASAHWSAFFLLLGTHGLHVSIGIGWIVLLVIQMKKRGLTPRTTSKFFIASLYWHFLD 186 Query: 183 VVWIFIFSFVYLKGL 197 VVWI IF+ VYL G+ Sbjct: 187 VVWIMIFTGVYLLGM 201 >ref|NP_463548.1| AA3-600 quinol oxidase subunit III [Listeria monocytogenes EGD-e] pir||AH1806 AA3-600 quinol oxidase chain III [imported] - Listeria monocytogenes (strain EGD-e) emb|CAC98230.1| AA3-600 quinol oxidase subunit III [Listeria monocytogenes] Length = 203 Score = 182 bits (461), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 101/201 (50%), Positives = 131/201 (65%), Gaps = 5/201 (2%) Query: 1 MKIDASKPLEYSTEENSNKIFGFWVFLGAEIPLFATLFTVYFVMVDRFASGPSG---SEL 57 ++ + + P+EY +E+ I GFW+FLGAEI LFATLF YFVM R A +G +E+ Sbjct: 4 VETNKNLPIEYRSEQGRLNILGFWIFLGAEIALFATLFATYFVM--RKAGSNAGHPPAEM 61 Query: 58 FEIGPVLIETFLLLTSSFTIGLAVHAMRLGYKKAMMVLMAITLLMGLGFIGIEIDEFFTY 117 FE+ VLI TFLLLTSSFT GLA+ MR G K + + ITL++G GF+G E+ EF Y Sbjct: 62 FELWLVLIMTFLLLTSSFTCGLAIGEMRKGNVKMLTIYSIITLILGAGFVGFELYEFAHY 121 Query: 118 VHEGATLQTXXXXXXXXXXXXTHGAHVSFGFLWGTAIMIQVWRQGINPATANKAFIFSLF 177 V EG T+Q THG HV+ G W + I+IQ+ G+ P TA+K FI SL+ Sbjct: 122 VTEGVTMQVGSYWSAFFVLLGTHGLHVTVGIFWISFILIQIKMHGLTPKTASKVFISSLY 181 Query: 178 WHFLDVVWIFIFSFVYLKGLM 198 WHFLDVVWIFIF+ VYL G++ Sbjct: 182 WHFLDVVWIFIFTGVYLLGMV 202 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.331 0.144 0.450 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 259,986,634 Number of extensions: 9016620 Number of successful extensions: 36400 Number of sequences better than 1.0e-05: 1180 Number of HSP's gapped: 36173 Number of HSP's successfully gapped: 1180 Length of query: 198 Length of database: 757,237,578 Length adjustment: 119 Effective length of query: 79 Effective length of database: 434,140,797 Effective search space: 34297122963 Effective search space used: 34297122963 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 123 (52.0 bits)