BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0391.0033.p
         (126 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_833794.1| Acetoin transport repressor [Bacillus cereus AT...    89   2e-17
ref|NP_980439.1| transcriptional regulator, GntR family [Bacillu...    89   3e-17
ref|NP_390924.1| similar to transcriptional regulator (GntR fami...    89   4e-17
ref|ZP_00183243.1| hypothetical protein Exigu136801 [Exiguobacte...    89   5e-17
ref|NP_782553.1| transcriptional regulator, gntR family [Clostri...    88   5e-17

>ref|NP_833794.1| Acetoin transport repressor [Bacillus cereus ATCC 14579]
 gb|AAP10995.1| Acetoin transport repressor [Bacillus cereus ATCC 14579]
          Length = 141

 Score = 89.4 bits (220), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 46/111 (41%), Positives = 69/111 (62%), Gaps = 1/111 (0%)

Query: 2   FELDVRSRKPIYEQLNDKVKELIMHGILRADEQLPSVRTLSSQLTVNPNTIQKAYRELER 61
            +LD RS  PI+EQ+   +KEL++  +L   ++LPSVR L+S L +NPNT+ KAY+ELER
Sbjct: 5   IQLDPRSNTPIWEQIVQNIKELVLKSMLAPSDKLPSVRELASLLVINPNTVSKAYQELER 64

Query: 62  EGYIYSLQGKGSFVA-PLQQGQNESKKXXXXXXXXXXXXXXVYLGFTENEI 111
           +G I +L+GKG+FV+  +    +E K                YLG T+++I
Sbjct: 65  QGIIETLRGKGTFVSQSITPTLDERKIAMVEKQFHQLLLEASYLGVTKDKI 115


>ref|NP_980439.1| transcriptional regulator, GntR family [Bacillus cereus ATCC 10987]
 gb|AAS43047.1| transcriptional regulator, GntR family [Bacillus cereus ATCC 10987]
          Length = 139

 Score = 89.0 bits (219), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 46/111 (41%), Positives = 69/111 (62%), Gaps = 1/111 (0%)

Query: 2   FELDVRSRKPIYEQLNDKVKELIMHGILRADEQLPSVRTLSSQLTVNPNTIQKAYRELER 61
            +LD RS  PI+EQ+   +KEL++  +L   ++LPSVR L+S L +NPNT+ KAY+ELER
Sbjct: 3   IQLDPRSNTPIWEQIVQNIKELVLKNMLAPSDKLPSVRELASLLVINPNTVSKAYQELER 62

Query: 62  EGYIYSLQGKGSFVA-PLQQGQNESKKXXXXXXXXXXXXXXVYLGFTENEI 111
           +G I +L+GKG+FV+  +    +E K                YLG T+++I
Sbjct: 63  QGIIETLRGKGTFVSQSITPTLDERKIAMVEKQFHQLLLEASYLGVTKDKI 113


>ref|NP_390924.1| similar to transcriptional regulator (GntR family) [Bacillus
          subtilis]
 pir||G69999 transcription regulator GntR related protein ytrA - Bacillus
          subtilis
 gb|AAC00247.1| transcription regulator [Bacillus subtilis]
 emb|CAB15024.1| ytrA [Bacillus subtilis subsp. subtilis str. 168]
          Length = 130

 Score = 88.6 bits (218), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 37/76 (48%), Positives = 59/76 (77%)

Query: 1  MFELDVRSRKPIYEQLNDKVKELIMHGILRADEQLPSVRTLSSQLTVNPNTIQKAYRELE 60
          M ++D RS  PIYEQ+  ++KEL + GI++  ++LPSVR L++ +  NPNT+ KAY+ELE
Sbjct: 1  MIQIDPRSSTPIYEQIIQQMKELCLKGIMKPGDKLPSVRELATIIIANPNTVSKAYKELE 60

Query: 61 REGYIYSLQGKGSFVA 76
          REG I +L+G+G++++
Sbjct: 61 REGIIETLRGRGTYIS 76


>ref|ZP_00183243.1| hypothetical protein Exigu136801 [Exiguobacterium sp. 255-15]
          Length = 122

 Score = 88.6 bits (218), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 40/78 (51%), Positives = 57/78 (73%)

Query: 1  MFELDVRSRKPIYEQLNDKVKELIMHGILRADEQLPSVRTLSSQLTVNPNTIQKAYRELE 60
          MF +D +S  PIYEQL  ++   I  G+LR+ EQ+PSVR L+S L VNPNT+ +AY+ELE
Sbjct: 1  MFTVDPKSSLPIYEQLVAQIIRAIARGLLRSGEQMPSVRELASTLLVNPNTVSRAYQELE 60

Query: 61 REGYIYSLQGKGSFVAPL 78
             +I +++GKGSF++ L
Sbjct: 61 SRNFIVTMRGKGSFISDL 78


>ref|NP_782553.1| transcriptional regulator, gntR family [Clostridium tetani E88]
 gb|AAO36490.1| transcriptional regulator, gntR family [Clostridium tetani E88]
          Length = 126

 Score = 88.2 bits (217), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 40/76 (52%), Positives = 60/76 (78%)

Query: 1  MFELDVRSRKPIYEQLNDKVKELIMHGILRADEQLPSVRTLSSQLTVNPNTIQKAYRELE 60
          M  +D RS K IY+Q+ D++KE I+ GIL+  ++LPSVR +SS LTVNPNT+ KAY+ELE
Sbjct: 1  MINIDSRSSKSIYQQIVDQIKENILKGILKPGDKLPSVREMSSLLTVNPNTVSKAYQELE 60

Query: 61 REGYIYSLQGKGSFVA 76
          R+  I +++G+G++V+
Sbjct: 61 RQKTIETIRGRGTYVS 76


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.314    0.134    0.361 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 152,715,736
Number of extensions: 4899531
Number of successful extensions: 11375
Number of sequences better than 1.0e-05: 211
Number of HSP's gapped: 11398
Number of HSP's successfully gapped: 211
Length of query: 126
Length of database: 757,237,578
Length adjustment: 89
Effective length of query: 37
Effective length of database: 515,593,767
Effective search space: 19076969379
Effective search space used: 19076969379
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 120 (50.8 bits)