BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0391.0032.p (300 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_782554.1| ABC transporter ATP-binding protein [Clostridiu... 211 1e-53 ref|NP_472239.1| similar to ABC transporter, ATP-binding protein... 191 2e-47 ref|NP_846532.1| ABC transporter, ATP-binding protein [Bacillus ... 189 5e-47 ref|NP_390923.1| similar to ABC transporter (ATP-binding protein... 189 1e-46 ref|NP_980440.1| ABC transporter, ATP-binding protein [Bacillus ... 188 1e-46 >ref|NP_782554.1| ABC transporter ATP-binding protein [Clostridium tetani E88] gb|AAO36491.1| ABC transporter ATP-binding protein [Clostridium tetani E88] Length = 298 Score = 211 bits (538), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 99/296 (33%), Positives = 180/296 (60%), Gaps = 1/296 (0%) Query: 1 MIEIRGVSKSFQGEKAVDSLSLTVHKGAIYGLLGSNGAGKTTLLKTLAGIYRSEEGTVKI 60 M+EI V+K + +++++L V KG+I+GL+G NGAGKTTL+K + GIY+ + G +KI Sbjct: 1 MLEISNVNKKLGNKLILNNVNLNVSKGSIFGLIGENGAGKTTLIKCITGIYKVDSGNIKI 60 Query: 61 GGQPVFENPQVKQSLIFMPDSPYFFPQASLKTMAAFYRSVYPGFSDKRFEELGTVFRLDM 120 + VFEN ++K+ + ++ D + P + M F++ Y FS RF EL F++ + Sbjct: 61 FNEEVFENTKIKEKIGYVADENQYIPSFKVSEMIKFFKLTYKKFSMNRFNELNKTFKIPI 120 Query: 121 GRKLSRFSKGMQRQAAFWLALSCRPDVLIMDEPIDGLDPVMRRQIKNLLFQEVAERELTV 180 +++ SKGM+ + + L LS P++L++DEP GLDPV+++++ N+L +VA+ T+ Sbjct: 121 DKRIKELSKGMKMRLSLMLNLSIMPEILVLDEPTSGLDPVIKKKVINILLDDVAKNNTTI 180 Query: 181 LISSHNLREIEDLCDHVGIMHHGRMLVEKDLDDLKADTHKVQVAFRDERHADALAAKLQI 240 ISSH+L ++E +CD+V ++ G + ++DD+K + K+QV F+D D + + ++ Sbjct: 181 FISSHHLGDLERICDNVAFINKGTISYVNNIDDMKHNIKKLQVVFKDNVPKD-IQSWDEV 239 Query: 241 LHQERRGSVDLYIVKGDRERISKVIHVYEPYVFDLLPLTLEEIFIYEMGDAGYDAQ 296 L E G V+ I K + + + + + L L+LE++FIY + + ++ + Sbjct: 240 LTIESIGRVNYVITKKFSKELEEKLKSMSALFIEELDLSLEDMFIYSVEEDEHNEK 295 >ref|NP_472239.1| similar to ABC transporter, ATP-binding protein [Listeria innocua] pir||AI1795 ABC transporter, ATP-binding protein homolog lin2912 [imported] - Listeria innocua (strain Clip11262) emb|CAC98137.1| lin2912 [Listeria innocua] Length = 295 Score = 191 bits (484), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 102/299 (34%), Positives = 175/299 (58%), Gaps = 6/299 (2%) Query: 2 IEIRGVSKSFQGEKAVDSLSLTVHKGAIYGLLGSNGAGKTTLLKTLAGIYRSEEGTVKIG 61 +EIR ++K + + +S + G I L+G NG GKTTL T+ GIY +EG V + Sbjct: 1 MEIRNLTKKMEDNLVLKDISFGLKAGEITALIGRNGVGKTTLFSTMTGIYLPDEGDVFLD 60 Query: 62 GQPVFENPQVKQSLIFMPDSPYFFPQASLKTMAAFYRSVYPGFSDKRFEELGTVFRLDMG 121 G+ +FE+P+VKQ L F+ D+ F S++T+ YR +YP F + F +L F L M Sbjct: 61 GKSIFEHPEVKQQLFFLEDNMNHFNTYSVQTVVKIYRKIYPTFDETFFNDLMRQFELPMK 120 Query: 122 RKLSRFSKGMQRQAAFWLALSCRPDV--LIMDEPIDGLDPVMRRQIKNLLFQEVAERELT 179 KL FSKG R+A F++ L+ DV L++DEP+DGLD ++++QI ++ V +RE++ Sbjct: 121 AKLMSFSKG--RKALFFIILAFSLDVRYLLLDEPMDGLDIIIKKQILAIIKDTVKKREMS 178 Query: 180 VLISSHNLREIEDLCDHVGIMHHGRMLVEKDLDDLKADTHKVQVAFRDERHADALAAKLQ 239 V+I+SH L E+E + + V ++ + ++ LDD++ D K+QVAF+ ++ D + Q Sbjct: 179 VVIASHRLDELEAIANRVIVLKGAHLELDYYLDDMRNDAVKIQVAFKTKKIPDFVKNNAQ 238 Query: 240 ILHQERRGSVDLYIVKGDRERISKVIHVYEPYVFDLLPLTLEEIFIYEMGDAGYDAQPI 298 +L+ R G + +V + + + + EP +F+ + +++E+IF + + D I Sbjct: 239 LLY--RNGRIYTLLVTKNASEFVRKLRLEEPVLFEEMAISIEDIFTVHLANDKIDYYEI 295 >ref|NP_846532.1| ABC transporter, ATP-binding protein [Bacillus anthracis str. Ames] gb|AAP28018.1| ABC transporter, ATP-binding protein [Bacillus anthracis str. Ames] Length = 293 Score = 189 bits (481), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 100/286 (34%), Positives = 172/286 (60%), Gaps = 4/286 (1%) Query: 1 MIEIRGVSKSFQGEKAVDSLSLTVHKGAIYGLLGSNGAGKTTLLKTLAGIYRSEEGTVKI 60 M+++ + K+ + +D +S T+ +G+I GLLG NGAGKTTLL+T+ GI +EG+V Sbjct: 1 MLKVTSLKKTIDSQTILDDVSFTLQRGSIIGLLGRNGAGKTTLLRTMVGILDPDEGSVTY 60 Query: 61 GGQPVFENPQVKQSLIFMPDSPYFFPQASLKTMAAFYRSVYPGFSDKRFEELGTVFRLDM 120 G + +NP+ KQ ++++PDS ++K + FY++VY F + F EL F L Sbjct: 61 GDTDIHKNPETKQKIVYVPDSTNILNGYTVKEIVRFYKTVYTAFDEVYFYELLERFNLP- 119 Query: 121 GRKLSRFSKGMQRQAAFWLALSCRPDVLIMDEPIDGLDPVMRRQIKNLLFQEVAERELTV 180 +++ +SKGM+ A LA+S + + +I+DEP +GLDP+++RQI L EVAE+E+T+ Sbjct: 120 NKRIRSYSKGMKALLAIILAISTKAEYIILDEPTNGLDPIVKRQILQFLVGEVAEKEITI 179 Query: 181 LISSHNLREIEDLCDHVGIMHHGRMLVEKDLDDLKADTHKVQVAF-RDERHADALAAKLQ 239 +S+H+L E+E + D + I+ + LDD K+ K+QVA+ R + ++ Sbjct: 180 FVSTHHLDEVEQIADTIIILKGHTISSITSLDDAKSRFAKIQVAYERSLPQKLENLSNIK 239 Query: 240 ILHQERRGSVDLYIVKGDRERISKVIHVYEPYVFDLLPLTLEEIFI 285 IL+Q G V +++G+ + + +P + + L ++LE+IFI Sbjct: 240 ILNQ--TGKVYTILIEGNVATTLEKFYKEQPILIEELTMSLEDIFI 283 >ref|NP_390923.1| similar to ABC transporter (ATP-binding protein) [Bacillus subtilis] pir||H69999 ABC transporter (ATP-binding protein) homolog ytrB - Bacillus subtilis gb|AAC00248.1| transporter [Bacillus subtilis] emb|CAB15023.1| ytrB [Bacillus subtilis subsp. subtilis str. 168] Length = 292 Score = 189 bits (479), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 101/291 (34%), Positives = 172/291 (59%), Gaps = 6/291 (2%) Query: 1 MIEIRGVSKSFQGEKAVDSLSLTVHKGAIYGLLGSNGAGKTTLLKTLAGIYRSEEGTVKI 60 MIE+R +SK+ G + + +SLT+ KG I+GLLG NG+GKTT+L+ + I ++ GT+ Sbjct: 1 MIELRQLSKAIDGNQVLKDVSLTIEKGEIFGLLGRNGSGKTTMLRLIQQIIFADSGTILF 60 Query: 61 GGQPVFENPQVKQSLIFMPDSPYFFPQASLKTMAAFYRSVYPGFSDKRFEELGTVFRLDM 120 G + ++P+VKQ++I+MP F+ + + K + R +YP F EL + + Sbjct: 61 DGVEIKKHPKVKQNIIYMPVQNPFYDKYTYKQLVDILRRIYPKFDVTYANELMNRYEIPE 120 Query: 121 GRKLSRFSKGMQRQAAFWLALSCRPDVLIMDEPIDGLDPVMRRQIKNLLFQEVAERELTV 180 +K S G+++Q + L+ + RP ++++DEP DG+D V R + L+ EVAER+ ++ Sbjct: 121 TKKYRELSTGLKKQLSLVLSFAARPALILLDEPTDGIDAVTRHDVLQLMVDEVAERDTSI 180 Query: 181 LISSHNLREIEDLCDHVGIMHHGRMLVEKDLDDLKADTHKVQVAFRDERHADALAAKLQI 240 LI+SH L +IE +C+ +G + + DLD+LK + K+Q+AF + + LA + Q Sbjct: 181 LITSHRLEDIERMCNRIGFLEDNSLTNVMDLDELKEEYIKIQMAFDTDVN---LAIREQN 237 Query: 241 LHQERRGSV--DLYIVKGDRERISKVIHVYEPYVFDLLPLTLEEIFIYEMG 289 + + V + I K D E+ S + +P V++ LP+ LEE+FI + G Sbjct: 238 IPMLDQAGVFYTVLIPKSDEEKKS-FLRELKPKVWNELPVNLEEVFIAKFG 287 >ref|NP_980440.1| ABC transporter, ATP-binding protein [Bacillus cereus ATCC 10987] gb|AAS43048.1| ABC transporter, ATP-binding protein [Bacillus cereus ATCC 10987] Length = 293 Score = 188 bits (478), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 103/289 (35%), Positives = 170/289 (58%), Gaps = 10/289 (3%) Query: 1 MIEIRGVSKSFQGEKAVDSLSLTVHKGAIYGLLGSNGAGKTTLLKTLAGIYRSEEGTVKI 60 M+++ + K+ + +D +S T+ +G I GLLG NGAGKTTLL+T+ GI +EG V Sbjct: 1 MLKVTNLKKTIDNQTILDDVSFTLQRGNIIGLLGRNGAGKTTLLRTMVGILDPDEGCVTY 60 Query: 61 GGQPVFENPQVKQSLIFMPDSPYFFPQASLKTMAAFYRSVYPGFSDKRFEELGTVFRLDM 120 + +NP+ KQ ++++PDS ++K + FY+SVY F + F EL F L Sbjct: 61 EDTDIHKNPETKQKIVYVPDSTNILNGYTVKEIVKFYKSVYAAFDEAYFYELLERFNLP- 119 Query: 121 GRKLSRFSKGMQRQAAFWLALSCRPDVLIMDEPIDGLDPVMRRQIKNLLFQEVAERELTV 180 +++ +SKGM+ A LA+S + + +I+DEP +GLDP+++RQI L EVAE+E+T+ Sbjct: 120 NKRIRSYSKGMKALLAIILAVSTKAEYIILDEPTNGLDPIVKRQILQFLVGEVAEKEITI 179 Query: 181 LISSHNLREIEDLCDHVGIMHHGRMLVEKDLDDLKADTHKVQVAFRDERHADALAAKLQI 240 IS+H+L E+E + D + I+ + LDD K+ K+QVA+ ER +L KL+ Sbjct: 180 FISTHHLDEVEQIADTIIILKGHTIASITSLDDAKSQFAKIQVAY--ER---SLPQKLEN 234 Query: 241 LHQ----ERRGSVDLYIVKGDRERISKVIHVYEPYVFDLLPLTLEEIFI 285 L + G V +++G+ + + +P + + L ++LE+IFI Sbjct: 235 LSNIKILNQTGKVYTILIEGNVATTLEKFYKEQPLLIEELTMSLEDIFI 283 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.322 0.140 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 422,427,293 Number of extensions: 16806723 Number of successful extensions: 107019 Number of sequences better than 1.0e-05: 13803 Number of HSP's gapped: 97132 Number of HSP's successfully gapped: 14353 Length of query: 300 Length of database: 757,237,578 Length adjustment: 125 Effective length of query: 175 Effective length of database: 417,850,203 Effective search space: 73123785525 Effective search space used: 73123785525 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 125 (52.8 bits)