BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0391.0024.p (172 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_651925.1| CG1981-PA [Drosophila melanogaster] >gi|7304305... 131 5e-30 gb|AAD33588.1| G/T mismatch-specific thymine DNA glycosylase [Dr... 130 1e-29 gb|EAA70466.1| hypothetical protein FG00873.1 [Gibberella zeae P... 119 2e-26 gb|EAJ36238.1| unknown [environmental sequence] 115 6e-25 gb|EAH53440.1| unknown [environmental sequence] 112 3e-24 >ref|NP_651925.1| CG1981-PA [Drosophila melanogaster] gb|AAF59338.1| CG1981-PA [Drosophila melanogaster] emb|CAB93525.1| mismatch depedent uracil/thymine DNA glycosylase [Drosophila melanogaster] Length = 1738 Score = 131 bits (330), Expect = 5e-30, Method: Composition-based stats. Identities = 70/147 (47%), Positives = 93/147 (63%), Gaps = 5/147 (3%) Query: 4 VPDHLDHGLQIVFIGFNPSLRSGEVGHHYANPRNNFWRILERSGLTPRLYDASEDGELLR 63 +PDHL L IV +G NP L + GHHYA P N+FW+ L +GLT A ED +L++ Sbjct: 779 IPDHLCDNLDIVIVGINPGLFAAYKGHHYAGPGNHFWKCLYLAGLTQEQMSADEDHKLIK 838 Query: 64 LGLGFTNIVARPTRGAEDITREEYAEGRQILREKLARHRPEIACFVGKGVYTEFSRRPKA 123 G+GFTN+VAR T+G+ D+TR+E EG +IL EKL R RP++A F GK ++ FS + + Sbjct: 839 QGIGFTNMVARATKGSADLTRKEIKEGSRILLEKLQRFRPKVAVFNGKLIFEVFSGKKEF 898 Query: 124 DWGFQDGQPPVVDGVREF--VAPSSSG 148 +G QP VDG F V PSSS Sbjct: 899 HFG---RQPDRVDGTDTFIWVMPSSSA 922 >gb|AAD33588.1| G/T mismatch-specific thymine DNA glycosylase [Drosophila melanogaster] Length = 1095 Score = 130 bits (327), Expect = 1e-29, Method: Composition-based stats. Identities = 70/147 (47%), Positives = 93/147 (63%), Gaps = 5/147 (3%) Query: 4 VPDHLDHGLQIVFIGFNPSLRSGEVGHHYANPRNNFWRILERSGLTPRLYDASEDGELLR 63 +PDHL L IV +G NP L + GHHYA P N+FW+ L +GLT A ED +L++ Sbjct: 136 IPDHLCDNLDIVIVGINPGLFAAYKGHHYAGPGNHFWKCLYLAGLTQEQMSADEDHKLIK 195 Query: 64 LGLGFTNIVARPTRGAEDITREEYAEGRQILREKLARHRPEIACFVGKGVYTEFSRRPKA 123 G+GFTN+VAR T+G+ D+TR+E EG +IL EKL R RP++A F GK ++ FS + + Sbjct: 196 QGIGFTNMVARATKGSADLTRKEIKEGSRILLEKLQRFRPKVAVFNGKLIFEVFSGKKEF 255 Query: 124 DWGFQDGQPPVVDGVREF--VAPSSSG 148 +G QP VDG F V PSSS Sbjct: 256 HFG---RQPDRVDGTDTFIWVMPSSSA 279 >gb|EAA70466.1| hypothetical protein FG00873.1 [Gibberella zeae PH-1] Length = 386 Score = 119 bits (299), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 65/161 (40%), Positives = 98/161 (60%), Gaps = 14/161 (8%) Query: 4 VPDHLDHGLQIVFIGFNPSLRSGEVGHHYANPRNNFWRILERSGLTPRLYDASEDGELLR 63 +PD + L ++FIG NP +++ GH YA+P N FW++L SGLTPRL +ED +L Sbjct: 191 LPDAIADNLLVLFIGLNPGIQTARTGHAYAHPSNLFWKLLFSSGLTPRLCSPTEDRKLPE 250 Query: 64 L-GLGFTNIVARPTRGAEDITREEYAEGRQILREKLARHRPEIACFVGKGVYTEFSR--- 119 + +GFTNIVARP+R +++++E EG +IL EK ++RPE C VGK ++ R Sbjct: 251 MYSMGFTNIVARPSRNGSELSKQEMDEGVEILHEKCRKYRPESVCVVGKSIWESIWRVRH 310 Query: 120 -RP--KA-DWGFQDGQPPV------VDGVREFVAPSSSGLV 150 +P KA +G+QD + +G + FV+ S+SGL Sbjct: 311 GKPVGKAFKYGWQDESENMGVIEGEWEGAKVFVSSSTSGLA 351 >gb|EAJ36238.1| unknown [environmental sequence] Length = 188 Score = 115 bits (287), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 89/164 (54%), Gaps = 4/164 (2%) Query: 2 DEVPDHLDHGLQIVFIGFNPSLRSGEVGHHYANPRNNFWRILERSGLTPRLYDASEDGEL 61 DE+PD + L ++F G NP L + GHH+A N FWR++ +G TP +D + Sbjct: 9 DELPDLIAPHLDVLFCGINPGLTAAATGHHFAGRSNRFWRVIHLAGFTPVEIPPQDDRAI 68 Query: 62 LRLGLGFTNIVARPTRGAEDITREEYAEGRQILREKLARHRPEIACFVGKGVYTEFSRRP 121 L+ G G T +V RPT A+ ++R E+ + +KLA + P F+GK Y+ SR+ Sbjct: 69 LQYGCGLTAVVKRPTASADQLSRAEFTAAAEEFDQKLACYAPRFVAFLGKAAYSALSRQR 128 Query: 122 KADWGFQDGQPPVVDGVREFVAPSSSGL-VRMPLPEIVAIYRRL 164 + +WG QP + G +V P+ SG + L E+V YR+L Sbjct: 129 EIEWGL---QPARMQGASVWVLPNPSGRNLAFSLDELVDAYRQL 169 >gb|EAH53440.1| unknown [environmental sequence] Length = 164 Score = 112 bits (280), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 61/161 (37%), Positives = 88/161 (54%), Gaps = 7/161 (4%) Query: 8 LDHGLQIVFIGFNPSLRSGEVGHHYANPRNNFWRILERSGLTPRLYDASEDGELLRLGLG 67 + HGL++VF+G NPSL+S E GH+YA N FW L +G T R ED E+LR G+G Sbjct: 1 MKHGLEVVFVGLNPSLKSAETGHYYAGLGNQFWPFLSEAGFTNRQLRPDEDHEVLRFGVG 60 Query: 68 FTNIVARPTRGAEDITREEYAEGRQILREKLARHRPEIACFVGKGVYTEFSRRPKADWGF 127 T+ V R TRG D+ R E+ ++R K+ + RP CF GK + + D+G Sbjct: 61 LTDFVKRATRGVNDLKRSEFEI--DLVRAKITKVRPRFVCFNGKSGFQ--ATVGPCDYGL 116 Query: 128 QDGQPPVVDGVREFVAPSSSGLVRMPLPEIVAIYRRLYEYI 168 Q + R +VAPS+SG + M + +A + L E + Sbjct: 117 QAQEWST---TRLYVAPSTSGALPMTRTDKLAHFHALKELV 154 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.321 0.142 0.438 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 287,819,529 Number of extensions: 12361248 Number of successful extensions: 21285 Number of sequences better than 1.0e-05: 39 Number of HSP's gapped: 21258 Number of HSP's successfully gapped: 39 Length of query: 172 Length of database: 757,237,578 Length adjustment: 117 Effective length of query: 55 Effective length of database: 439,570,995 Effective search space: 24176404725 Effective search space used: 24176404725 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 121 (51.2 bits)