BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0391.0023.p (324 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00103965.1| COG0472: UDP-N-acetylmuramyl pentapeptide pho... 361 1e-98 ref|NP_562550.1| probable undecaprenyl-phosphate N-acetylglucosa... 327 2e-88 ref|NP_621851.1| UDP-N-acetylmuramyl pentapeptide phosphotransfe... 215 1e-54 ref|NP_781015.1| putative undecaprenyl-phosphate alpha-N-acetylg... 203 5e-51 ref|NP_391433.1| alternate gene name: yvhI [Bacillus subtilis] >... 188 1e-46 >ref|ZP_00103965.1| COG0472: UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase [Desulfitobacterium hafniense] Length = 330 Score = 361 bits (927), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 182/306 (59%), Positives = 236/306 (77%), Gaps = 5/306 (1%) Query: 6 IFYVLAFLVSFCIVYLLIPPLGRLAFRLDFVDKPRKDVERKIHREPIPLTASYAIFIGFF 65 ++Y L F+ F IV++ IP L +LA + +FVDKP ERK H+ PIPL IF+GF Sbjct: 17 VYYPLFFV--FFIVFMSIPLLEKLAVKWNFVDKP---TERKKHKHPIPLLGGVGIFLGFM 71 Query: 66 ITYLLFTRDFSLGTLALFIGGVLLLTIGTIDDWYKTKGKDFPALPKFIVQIAAAILVFLS 125 I YL+F R + +LA+ I VL+L IG IDDWYKT GK+FPALP+ +V I AA +VF + Sbjct: 72 IGYLVFVRPINYQSLAIIIASVLVLGIGLIDDWYKTLGKEFPALPRLMVHILAAWMVFSA 131 Query: 126 GNAFTGFFNPFSGDYISLPVILQFVLTILWIFGVTTVINFSDGMDGLAGGLTAISAMTLF 185 G F GF NPF+ YI LP I+Q +L+I+WI GVTTVIN+SDG+DGLAG L+AI+ TL+ Sbjct: 132 GIVFYGFTNPFTQQYIVLPYIIQLILSIMWIVGVTTVINWSDGIDGLAGILSAIAGATLY 191 Query: 186 VVALAKGQSASAMMAITLVGVTIAYLRYNKAPAKIFMGDAGATFLGYILAVIALDGAFKQ 245 V ALAKGQS SA+++ LVG ++ +LRYN+ PA+IFMGD+GA FLG+ILA++AL GAFKQ Sbjct: 192 VAALAKGQSDSALLSALLVGASLGFLRYNRHPARIFMGDSGANFLGFILAIVALSGAFKQ 251 Query: 246 ATVLSLFIPILALGVPIFDNLFVVIKRFVQGKSIYQADATQVHYRLLKAGLNQKQVVAVL 305 AT++SL IP+LALGVPIFDNL VV+KRF +G+SIY+ADATQ+H+RL+ +GLN KQ VA + Sbjct: 252 ATLVSLSIPVLALGVPIFDNLIVVLKRFSRGESIYKADATQIHHRLISSGLNPKQTVAFI 311 Query: 306 YLASVC 311 L SVC Sbjct: 312 SLMSVC 317 >ref|NP_562550.1| probable undecaprenyl-phosphate N-acetylglucosaminyltransferase [Clostridium perfringens] dbj|BAB81340.1| probable undecaprenyl-phosphate N-acetylglucosaminyltransferase [Clostridium perfringens str. 13] Length = 319 Score = 327 bits (838), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 167/310 (53%), Positives = 221/310 (71%), Gaps = 7/310 (2%) Query: 5 VIFYVLAFLVSFCIVYLLIPPLGRLAFRLDFVDKPRKDVERKIHREPIPLTASYAIFIGF 64 +I Y++ L+ F IVYLL+P A FVDKP RK H + PL ++IGF Sbjct: 1 MIKYLIVMLIPFVIVYLLMPKFIEFANEKGFVDKP---TGRKKHDKLTPLIGGVVMYIGF 57 Query: 65 FITYLL---FTRDFSLGTLALFIGGVLLLTIGTIDDWYKTKGKDFPALPKFIVQIAAAIL 121 F TYL TR S T +FI L++ IG IDD+YK KGK+FP P+ I+QI AA + Sbjct: 58 FATYLFGIDSTRQLS-QTFIIFIAATLVIIIGVIDDYYKGKGKEFPIYPRVIIQILAATM 116 Query: 122 VFLSGNAFTGFFNPFSGDYISLPVILQFVLTILWIFGVTTVINFSDGMDGLAGGLTAISA 181 VF +G F G NPF+G++ +Q++LTI WIFG TTVIN+SDGMDGLAG ++ ISA Sbjct: 117 VFKAGIVFRGITNPFTGEFTQFSGWIQYILTITWIFGGTTVINWSDGMDGLAGSISIISA 176 Query: 182 MTLFVVALAKGQSASAMMAITLVGVTIAYLRYNKAPAKIFMGDAGATFLGYILAVIALDG 241 MT+FVVALAKGQ SA M+ITLVG +A+LRYN+ PA++FMGD+GA FLG+ILA+IAL+G Sbjct: 177 MTMFVVALAKGQFNSAYMSITLVGSILAFLRYNRHPARVFMGDSGANFLGFILAIIALEG 236 Query: 242 AFKQATVLSLFIPILALGVPIFDNLFVVIKRFVQGKSIYQADATQVHYRLLKAGLNQKQV 301 AFKQA LS+ +P+LALGVPIFDN+FV+ +RF GK +Y+AD +Q+HYRL + G++ KQ+ Sbjct: 237 AFKQAPALSILVPVLALGVPIFDNIFVIFRRFQSGKPVYEADRSQIHYRLQERGMSVKQI 296 Query: 302 VAVLYLASVC 311 V+ + + S C Sbjct: 297 VSYICILSGC 306 >ref|NP_621851.1| UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase [Thermoanaerobacter tengcongensis] gb|AAM23455.1| UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase [Thermoanaerobacter tengcongensis] Length = 346 Score = 215 bits (547), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 124/299 (41%), Positives = 189/299 (63%), Gaps = 8/299 (2%) Query: 8 YVLAFLVSFCIVYLLIPPLGRLAFRLDFVDKPRKDVERKIHREPIPLTASYAIFIGFFIT 67 Y L+F+++F + ++ P + +LAF + +D P D +R+IH +PIP AIF G + Sbjct: 4 YFLSFILAFAMSFVTTPLVKKLAFAIGAIDVP--DDKRRIHTKPIPRLGGLAIFAGTMAS 61 Query: 68 YLLFTRDFSLGTLALFIGGVLLLTIGTIDDWYKTKGKDFPALPKFIVQIAAAILVFLSGN 127 LL S T+ + +G ++++ +G +DD Y K K + QIAAA+++ LSG Sbjct: 62 LLLLLPK-SHETIGIILGSLVIVLLGVLDDKYTLSAK-----VKLVGQIAAALILILSGI 115 Query: 128 AFTGFFNPFSGDYISLPVILQFVLTILWIFGVTTVINFSDGMDGLAGGLTAISAMTLFVV 187 NPF I L + LT+LW+ GVT IN DG+DGLA G+ IS+ +LF++ Sbjct: 116 RIDWISNPFGSGVIYLKSWVAISLTLLWVVGVTNTINLIDGLDGLAAGIAFISSTSLFII 175 Query: 188 ALAKGQSASAMMAITLVGVTIAYLRYNKAPAKIFMGDAGATFLGYILAVIALDGAFKQAT 247 +L G+ A+A+++I + G ++ +L YN PAKIFMGD GA FLG++L+ I++ GA K AT Sbjct: 176 SLLNGRYATAVISIAIAGASLGFLPYNFNPAKIFMGDTGAMFLGFLLSAISIQGAIKSAT 235 Query: 248 VLSLFIPILALGVPIFDNLFVVIKRFVQGKSIYQADATQVHYRLLKAGLNQKQVVAVLY 306 +++ +P+L LGVPIFD LF +I+R + + I +AD +H+RLL GLNQKQVV +LY Sbjct: 236 AIAIVVPVLVLGVPIFDTLFAIIRRILNKRPIMEADRGHLHHRLLDKGLNQKQVVFILY 294 >ref|NP_781015.1| putative undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase [Clostridium tetani E88] gb|AAO34952.1| putative undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase [Clostridium tetani E88] Length = 353 Score = 203 bits (516), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 112/303 (36%), Positives = 178/303 (58%), Gaps = 10/303 (3%) Query: 10 LAFLVSFCIVYLLIPPLGRLAFRLDFVDKPRKDVERKIHREPIPLTASYAIFIGFFITYL 69 LAF+VS +L P + + A ++ +D P+ +R++H++PIPL AI++ F T + Sbjct: 15 LAFIVSTIASIILTPLVKKFAIKVKVIDVPKD--KRRVHKKPIPLLGGIAIYLSFLFTVV 72 Query: 70 LFTRDFSLGTLALFIGGVLLLTIGTIDDWYKTKGKDFPALPKFIVQIAAAILVFLSGNAF 129 + + + IG +++ G +DD Y+ + + K + QI AA + Sbjct: 73 MKEGPLTNSEKGILIGATIIVIAGFLDDKYELR-----PIYKLLFQILAATTLVAFDLRI 127 Query: 130 TGFFNPFSGDYISLPV-ILQFVLTILWIFGVTTVINFSDGMDGLAGGLTAISAMTLFVVA 188 NPFS L +L LT++W+ G+T IN DG+DGLA G+ IS++TLF++A Sbjct: 128 VNITNPFSNSNPWLSTGLLSIPLTLIWVVGITNAINLIDGLDGLAAGVALISSVTLFIIA 187 Query: 189 LAKG--QSASAMMAITLVGVTIAYLRYNKAPAKIFMGDAGATFLGYILAVIALDGAFKQA 246 + + +A + L G + +L YN PA IFMGD GA LG++LA I+++GA K A Sbjct: 188 VMSIDIRYEAAFLTAALSGAILGFLPYNFNPASIFMGDTGAQLLGFLLAAISIEGAIKSA 247 Query: 247 TVLSLFIPILALGVPIFDNLFVVIKRFVQGKSIYQADATQVHYRLLKAGLNQKQVVAVLY 306 +++ +PILALG+PI+D LF +I+R + GKSI +AD +H+RLL GLNQ+Q V ++Y Sbjct: 248 ATVAISVPILALGIPIYDTLFAMIRRKINGKSIMEADKGHLHHRLLDMGLNQRQAVLIMY 307 Query: 307 LAS 309 + S Sbjct: 308 VIS 310 >ref|NP_391433.1| alternate gene name: yvhI [Bacillus subtilis] sp|O34753|TAGO_BACSU Probable undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (UDP-GlcNAc:undecaprenyl-P GlcNAc 1-P transferase) pir||B69721 teichoic acid linkage unit synthesis tagO - Bacillus subtilis emb|CAA06152.1| putative undecaprenyl-phosphate N-acetylglucosaminyltransferase [Bacillus subtilis] emb|CAB15570.1| tagO [Bacillus subtilis subsp. subtilis str. 168] Length = 358 Score = 188 bits (478), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 108/299 (36%), Positives = 173/299 (57%), Gaps = 9/299 (3%) Query: 9 VLAFLVSFCIVYLLIPPLGRLAFRLDFVDKPRKDVERKIHREPIPLTASYAIFIGFFITY 68 V+AF+VS V ++ P + R+A ++ VD+P RK+H + +P AIFIG Sbjct: 10 VVAFIVSLLTVLIITPIVKRIAIKIGAVDQPS---NRKVHDKIMPRMGGLAIFIGVVAGV 66 Query: 69 LLFTRDFSLGTLALFIGGVLLLTIGTIDDWYKTKGKDFPALPKFIVQIAAAILVFLSGNA 128 L A+ +G +++ +G +DD Y+ K KF++Q+ AI++ +G Sbjct: 67 LASGIYTETRMTAITVGAFIIIVLGILDDKYQLSAK-----VKFLIQLGVAIMIVSTGLK 121 Query: 129 FTGFFNPFSGDYISLPVILQFVLTILWIFGVTTVINFSDGMDGLAGGLTAISAMTLFVVA 188 F PF + L + + LT+LWI G+T IN DG+DGLA GL+ I T+ V+A Sbjct: 122 MDFFSVPFLTERFELG-WMAYPLTVLWIVGITNAINLIDGLDGLAAGLSVIGLSTIAVMA 180 Query: 189 LAKGQSASAMMAITLVGVTIAYLRYNKAPAKIFMGDAGATFLGYILAVIALDGAFKQATV 248 L+ G+ +++ ++ T+ +L YN PAKIFMGD G+ FLGY +++++L G +K T+ Sbjct: 181 LSGGKVLILSLSLVVIASTLGFLFYNFHPAKIFMGDTGSLFLGYSISILSLLGLYKSVTL 240 Query: 249 LSLFIPILALGVPIFDNLFVVIKRFVQGKSIYQADATQVHYRLLKAGLNQKQVVAVLYL 307 S+ IPI+ LGVPIFD F +I+R + + I D + +H+RL+ GL+ + V V+YL Sbjct: 241 FSIVIPIIILGVPIFDTTFAIIRRILNKQPISAPDKSHIHHRLMAFGLSHRMSVLVIYL 299 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.332 0.147 0.433 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 421,994,654 Number of extensions: 17298621 Number of successful extensions: 62946 Number of sequences better than 1.0e-05: 756 Number of HSP's gapped: 62044 Number of HSP's successfully gapped: 756 Length of query: 324 Length of database: 757,237,578 Length adjustment: 126 Effective length of query: 198 Effective length of database: 415,135,104 Effective search space: 82196750592 Effective search space used: 82196750592 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 126 (53.1 bits)