BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0391.0020.p (337 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_243041.1| BH2175~unknown conserved protein [Bacillus halo... 449 e-125 ref|NP_389170.1| similar to ABC transporter (binding protein) [B... 362 6e-99 ref|NP_470095.1| lin0753 [Listeria innocua] >gi|25305111|pir||AI... 356 4e-97 ref|NP_464286.1| lmo0759 [Listeria monocytogenes EGD-e] >gi|2530... 353 3e-96 ref|NP_814150.1| glyoxalase family protein [Enterococcus faecali... 342 8e-93 >ref|NP_243041.1| BH2175~unknown conserved protein [Bacillus halodurans] pir||G83921 hypothetical protein BH2175 [imported] - Bacillus halodurans (strain C-125) dbj|BAB05894.1| BH2175~unknown conserved protein [Bacillus halodurans] Length = 327 Score = 449 bits (1155), Expect = e-125, Method: Compositional matrix adjust. Identities = 214/321 (66%), Positives = 260/321 (80%) Query: 15 LKGLHHVSALTARAPENFKFYTEVLGLRLIKKTVNQDDVSVYHLFYGDEAGNPGTEVTFF 74 LKG HHVSA+TA+A EN+ FYT+ LG+RL+KKTVNQDD S+YHLFY DE GNPGT++TFF Sbjct: 6 LKGQHHVSAITAKAKENYTFYTKTLGMRLVKKTVNQDDTSMYHLFYADERGNPGTDLTFF 65 Query: 75 EIPNAGRNRDGNNSISALSLRVPDDKALEYWTQRLAEFQVEHDEIQDRGGRKTLAFRDHE 134 EIP+AG+ G NSI+ SLRVP D+AL+YW +R EF +EHD + GR TLAFRD E Sbjct: 66 EIPHAGQTYQGTNSITKTSLRVPSDEALQYWLKRFDEFGIEHDGVSHHTGRATLAFRDFE 125 Query: 135 GQRLILVSDEHNQGVAGGKPWDKSPVPAAYGILGLGPVHLTVPAAESSAKVLVELLGFRR 194 GQRL LVSDE+N+GVA G PW +SPVP AY I GLGPV LTV E + K+L++++G+R Sbjct: 126 GQRLELVSDENNEGVASGIPWKESPVPEAYAIRGLGPVTLTVSRPELTEKILIDVMGYRE 185 Query: 195 KSTYPSLVAGQPDVIVFETGEGGSGAELHLEERTDLPQERLGRGGVHHVAFRVDNEEELK 254 K +YPSLV GQPDV VFETGEGG+GAE+HLE R D+ +ER GRG VHHVAFRV+++EEL+ Sbjct: 186 KGSYPSLVEGQPDVKVFETGEGGTGAEVHLETRKDIGRERPGRGSVHHVAFRVESKEELE 245 Query: 255 QWIGRISSYSLPNSGFVDRFYFRSLYFREPSGILFELATDGPGFATDEDIEHLGESLALP 314 +W+ I++ LPNSGFV+R+YFRSLYFREP+GILFELATDGPGF DE E LGESLALP Sbjct: 246 KWVDYITNIGLPNSGFVERYYFRSLYFREPNGILFELATDGPGFEGDEPFETLGESLALP 305 Query: 315 PFLEDKRPQIEAHLKPLDTRQ 335 P+LE +R IE +LKPLDT Q Sbjct: 306 PYLEPQRETIEKNLKPLDTAQ 326 >ref|NP_389170.1| similar to ABC transporter (binding protein) [Bacillus subtilis] pir||C69855 ABC transporter homolog ykcA - Bacillus subtilis emb|CAA05567.1| YkcA [Bacillus subtilis] emb|CAB13144.1| ykcA [Bacillus subtilis subsp. subtilis str. 168] Length = 316 Score = 362 bits (929), Expect = 6e-99, Method: Compositional matrix adjust. Identities = 178/319 (55%), Positives = 227/319 (71%), Gaps = 4/319 (1%) Query: 13 LTLKGLHHVSALTARAPENFKFYTEVLGLRLIKKTVNQDDVSVYHLFYGDEAGNPGTEVT 72 + + G+HHVSALTA A +N FY +VLGL+L+KK+VNQD+ ++YHLFYGDE NPGTE+T Sbjct: 1 MKVNGIHHVSALTADAQKNLDFYKKVLGLKLVKKSVNQDEPTMYHLFYGDEVANPGTELT 60 Query: 73 FFEIPNAGRNRDGNNSISALSLRVPDDKALEYWTQRLAEFQVEHDEIQDRGGRKTLAFRD 132 FFEIP G NSIS++ LRVP +AL YW +R E QV H I R GR LAF+D Sbjct: 61 FFEIPRIAPFHAGTNSISSIGLRVPGTEALHYWKERFEEQQVTHSGISKRAGRDILAFQD 120 Query: 133 HEGQRLILVSDEHNQGVAGGKPWDKSPVPAAYGILGLGPVHLTVPAAESSAKVLVELLGF 192 HEGQRL+L +DE +G G P +S +P + GLGPV LTVP AE + VL +LGF Sbjct: 121 HEGQRLVLTADEEGKGY--GLPVKQSGIPEEFSFRGLGPVELTVPYAEPTLHVLTNILGF 178 Query: 193 RRKSTYPSLVAGQPDVIVFETGEGGSGAELHLEERTDLPQERLGRGGVHHVAFRVDNEEE 252 S P V GQ ++ E+GEGG+ E+HL ER DLP+ER G+G VHHVAFRV +EEE Sbjct: 179 TEISREP--VEGQGTAVILESGEGGAATEIHLIERNDLPRERQGKGSVHHVAFRVRDEEE 236 Query: 253 LKQWIGRISSYSLPNSGFVDRFYFRSLYFREPSGILFELATDGPGFATDEDIEHLGESLA 312 L W IS NSG V+R+YF++LYFREP+GILFEL+TDGPGF DE+++ LG+++A Sbjct: 237 LAGWHRIISREGFSNSGIVERYYFKALYFREPNGILFELSTDGPGFMVDENLDELGQTIA 296 Query: 313 LPPFLEDKRPQIEAHLKPL 331 LPP+LE +R +IEA LKP+ Sbjct: 297 LPPYLEHRRAEIEAKLKPI 315 >ref|NP_470095.1| lin0753 [Listeria innocua] pir||AI1526 hypothetical protein lin0753 [imported] - Listeria innocua (strain Clip11262) emb|CAC95985.1| lin0753 [Listeria innocua] Length = 319 Score = 356 bits (914), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 170/321 (52%), Positives = 229/321 (71%), Gaps = 7/321 (2%) Query: 15 LKGLHHVSALTARAPENFKFYTEVLGLRLIKKTVNQDDVSVYHLFYGDEAGNPGTEVTFF 74 LKG+HHV+A+T+ A +N+ F+TEVLG+RL+KKTVNQDD+ YHLF+ D+ G+ GT++TFF Sbjct: 5 LKGIHHVTAMTSSAEKNYAFFTEVLGMRLVKKTVNQDDIHTYHLFFADDKGSAGTDMTFF 64 Query: 75 EIPNAGRNRDGNNSISALSLRVPDDKALEYWTQRLAEFQVEHDEIQDRGGRKTLAFRDHE 134 + PN + R G +SIS +S RVP D ALEYW R + +V H +IQ G+K L F+D + Sbjct: 65 DFPNLPKGRHGTDSISRVSFRVPSDAALEYWLDRFDQLEVPHSDIQTLFGKKYLTFQDFD 124 Query: 135 GQRLILVSDEHNQGVAGGKPWDKSPVPAAYGILGLGPVHLTVPAAESSAKVLVELLGFRR 194 Q+L L+SDE+N+GVA G PW K PV Y I GLGPV LTV + ++ +L + GFR+ Sbjct: 125 DQQLQLISDENNEGVAAGTPWKKGPVSEKYAIYGLGPVFLTVVSLKNMEAILQTIFGFRK 184 Query: 195 KSTYPSLVAGQPDVIVFETGEGGSGAELHLEERTDLPQERLGRGGVHHVAFRVDNEEELK 254 V + + ++E GEGG+GA++ +EERTD+P G GGVHHVAFRVD+ EEL+ Sbjct: 185 -------VTEEDGLHLYEVGEGGNGAQVIVEERTDIPAAMQGYGGVHHVAFRVDDHEELQ 237 Query: 255 QWIGRISSYSLPNSGFVDRFYFRSLYFREPSGILFELATDGPGFATDEDIEHLGESLALP 314 +WI R+++ PNSG+V+RFYF SLY ILFE ATDGPGFA DE E LGE LALP Sbjct: 238 KWIDRMNTIEAPNSGYVNRFYFESLYVPVSERILFEFATDGPGFAGDEPYETLGEKLALP 297 Query: 315 PFLEDKRPQIEAHLKPLDTRQ 335 PFLE KR +IE ++P++T++ Sbjct: 298 PFLEPKRAEIEKMVRPINTKR 318 >ref|NP_464286.1| lmo0759 [Listeria monocytogenes EGD-e] pir||AG1169 hypothetical protein lmo0759 [imported] - Listeria monocytogenes (strain EGD-e) emb|CAC98837.1| lmo0759 [Listeria monocytogenes] Length = 319 Score = 353 bits (906), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 168/325 (51%), Positives = 231/325 (71%), Gaps = 7/325 (2%) Query: 11 MSLTLKGLHHVSALTARAPENFKFYTEVLGLRLIKKTVNQDDVSVYHLFYGDEAGNPGTE 70 M LKG+HHV+A+T+ A +N+ F+TEVLG+RL+KKTVNQDD+ YHLF+ D+ G+ GT+ Sbjct: 1 MIKDLKGIHHVTAMTSSAEKNYAFFTEVLGMRLVKKTVNQDDIHTYHLFFADDKGSAGTD 60 Query: 71 VTFFEIPNAGRNRDGNNSISALSLRVPDDKALEYWTQRLAEFQVEHDEIQDRGGRKTLAF 130 +TFF+ PN + R G +SIS ++ RVP D ALEYW R + +V H +I+ G+K L F Sbjct: 61 MTFFDFPNLPKGRHGTDSISRVAFRVPSDAALEYWLDRFEQLEVPHSDIKTLFGKKYLTF 120 Query: 131 RDHEGQRLILVSDEHNQGVAGGKPWDKSPVPAAYGILGLGPVHLTVPAAESSAKVLVELL 190 +D + Q+L L+SDE+N+GVA G PW PVP Y I GLGPV LTV + ++ +L + Sbjct: 121 QDFDDQQLQLISDENNEGVAPGTPWKNGPVPEKYAIYGLGPVFLTVVSLKNMDAILQTIF 180 Query: 191 GFRRKSTYPSLVAGQPDVIVFETGEGGSGAELHLEERTDLPQERLGRGGVHHVAFRVDNE 250 GFR+ V + + ++E GEGG+GA++ +EERTD+P G GGVHHVAFRV++ Sbjct: 181 GFRK-------VTEEDGLHLYEVGEGGNGAQVIVEERTDIPAAMQGYGGVHHVAFRVEDH 233 Query: 251 EELKQWIGRISSYSLPNSGFVDRFYFRSLYFREPSGILFELATDGPGFATDEDIEHLGES 310 EEL++WI R+++ PNSG+V+RFYF SLY ILFE ATDGPGFA+DE E LGE Sbjct: 234 EELQKWIDRMNTIEAPNSGYVNRFYFESLYVPVSERILFEFATDGPGFASDEPYETLGEK 293 Query: 311 LALPPFLEDKRPQIEAHLKPLDTRQ 335 LALPPFLE KR +IE ++P++T++ Sbjct: 294 LALPPFLEPKRAEIEKMVRPINTKR 318 >ref|NP_814150.1| glyoxalase family protein [Enterococcus faecalis V583] gb|AAO80221.1| glyoxalase family protein [Enterococcus faecalis V583] Length = 324 Score = 342 bits (877), Expect = 8e-93, Method: Compositional matrix adjust. Identities = 165/323 (51%), Positives = 218/323 (67%), Gaps = 7/323 (2%) Query: 11 MSLTLKGLHHVSALTARAPENFKFYTEVLGLRLIKKTVNQDDVSVYHLFYGDEAGNPGTE 70 M+ + GLHHV+A+T+ A + + F+T++LGLRLIKKTVNQDD+ YHLF+ D+AG+PGT+ Sbjct: 1 MNTQILGLHHVTAMTSSAEKIYHFFTDILGLRLIKKTVNQDDIETYHLFFADDAGSPGTD 60 Query: 71 VTFFEIPNAGRNRDGNNSISALSLRVPDDKALEYWTQRLAEFQVEHDEIQDRGGRKTLAF 130 +TFF+ P + G N+IS S RV DD L+YW R E+ ++H EIQ+R G+K L F Sbjct: 61 MTFFDFPGLPKGTKGTNTISRTSFRVKDDATLDYWVSRFNEYAIDHGEIQERFGKKYLEF 120 Query: 131 RDHEGQRLILVSDEHNQGVAGGKPWDKSPVPAAYGILGLGPVHLTVPAAESSAKVLVELL 190 D + QR L+SDE NQ VA G PW KS VP+ + ++GLGP +TV E VL E+L Sbjct: 121 EDFDNQRYQLISDEKNQCVAAGTPWKKSNVPSEHALIGLGPAFVTVENYEHLQLVLTEVL 180 Query: 191 GFRRKSTYPSLVAGQPDVIVFETGEGGSGAELHLEERTDLPQERLGRGGVHHVAFRVDNE 250 GF+ L+ + +FE GEGG+GA + +E R DLP + G G VHH+A RV +E Sbjct: 181 GFK-------LIDAEGSFHLFEVGEGGNGASIIVEHREDLPAAQEGYGNVHHLALRVADE 233 Query: 251 EELKQWIGRISSYSLPNSGFVDRFYFRSLYFREPSGILFELATDGPGFATDEDIEHLGES 310 E L+ WI +I+ PNSGFV+RFYF+S YF + +LFELATDGPGF DE EH GE Sbjct: 234 EALRFWIEKINRLEFPNSGFVERFYFKSEYFLAATHVLFELATDGPGFLEDETYEHAGEK 293 Query: 311 LALPPFLEDKRPQIEAHLKPLDT 333 L+LPPFLE KR IE ++P DT Sbjct: 294 LSLPPFLEPKRAGIEEFVRPFDT 316 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.317 0.138 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 549,206,521 Number of extensions: 25239488 Number of successful extensions: 49489 Number of sequences better than 1.0e-05: 68 Number of HSP's gapped: 49323 Number of HSP's successfully gapped: 69 Length of query: 337 Length of database: 757,237,578 Length adjustment: 126 Effective length of query: 211 Effective length of database: 415,135,104 Effective search space: 87593506944 Effective search space used: 87593506944 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 126 (53.1 bits)