BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0391.0011.p (251 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_781346.1| peptidyl-prolyl cis-trans isomerase [Clostridiu... 192 5e-48 ref|ZP_00097005.1| COG0652: Peptidyl-prolyl cis-trans isomerase ... 186 5e-46 ref|NP_563482.1| peptidyl-prolyl cis-trans isomerase B [Clostrid... 184 2e-45 ref|NP_349373.1| Peptidyl-prolyl cis-transisomerase, cyclophilin... 183 3e-45 ref|NP_562483.1| probable peptidyl-prolyl cis-trans isomerase B ... 174 2e-42 >ref|NP_781346.1| peptidyl-prolyl cis-trans isomerase [Clostridium tetani E88] gb|AAO35283.1| peptidyl-prolyl cis-trans isomerase [Clostridium tetani E88] Length = 172 Score = 192 bits (488), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 95/170 (55%), Positives = 114/170 (67%) Query: 81 HPVVTIEMDNGGIIKAELYPEVAPNTVNNFISLIQKGFYDGTIFHRVIPGFMIQXXXXXX 140 +P++TI M+NG ++K ELYPE+APNTV NFISLI KGFYDG IFHRVIPGF+IQ Sbjct: 3 NPIITITMENGDVMKGELYPEIAPNTVRNFISLIDKGFYDGLIFHRVIPGFVIQGGCPEG 62 Query: 141 XXXXXXXYSIAGEFTANGFTNNLQHTQGVLSMARSQDMNSGGSQFFIMAAAYPSLDGQYA 200 YSI GEF+ANGF N+L+H +GVLSMAR+ +S GSQFFIM P LDGQYA Sbjct: 63 TGVGGPGYSIKGEFSANGFPNSLKHEEGVLSMARAMSPDSAGSQFFIMVGESPHLDGQYA 122 Query: 201 AFGKVTEGQDVVDAIVNLXXXXXXXXXXXXVMKKVTVDTLGVTYPEPEKV 250 FGK+TEG DV IV +K++TVDT G Y EPE+ Sbjct: 123 GFGKITEGLDVAFKIVEQPTDFMDKPLEDQKIKEITVDTFGEKYEEPEEA 172 >ref|ZP_00097005.1| COG0652: Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Desulfitobacterium hafniense] Length = 169 Score = 186 bits (471), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 92/157 (58%), Positives = 110/157 (70%) Query: 82 PVVTIEMDNGGIIKAELYPEVAPNTVNNFISLIQKGFYDGTIFHRVIPGFMIQXXXXXXX 141 PVVTIEM++G IK ELYP+VAP TV NF+SL++KGFYDG IFHRVIPGFMIQ Sbjct: 11 PVVTIEMESGSTIKIELYPDVAPETVKNFVSLVEKGFYDGIIFHRVIPGFMIQGGDPQGT 70 Query: 142 XXXXXXYSIAGEFTANGFTNNLQHTQGVLSMARSQDMNSGGSQFFIMAAAYPSLDGQYAA 201 YSI GEFTANGF NNL+H +GV+SMAR+ + NS GSQFF+M A P LDGQYA+ Sbjct: 71 GMGGCGYSINGEFTANGFPNNLKHERGVISMARTANPNSAGSQFFLMHADSPHLDGQYAS 130 Query: 202 FGKVTEGQDVVDAIVNLXXXXXXXXXXXXVMKKVTVD 238 FG++ EG + VD I N+ MKKVTV+ Sbjct: 131 FGRIIEGIEEVDRIANVKRDYRDKPVEDQQMKKVTVE 167 >ref|NP_563482.1| peptidyl-prolyl cis-trans isomerase B [Clostridium perfringens] dbj|BAB82272.1| peptidyl-prolyl cis-trans isomerase B [Clostridium perfringens str. 13] Length = 170 Score = 184 bits (466), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 93/167 (55%), Positives = 111/167 (66%), Gaps = 1/167 (0%) Query: 81 HPVVTIEMDNGGIIKAELYPEVAPNTVNNFISLIQKGFYDGTIFHRVIPGFMIQXXXXXX 140 +P+VTIEM G IK ELYPE+APNTV NF+SL++KGFYDG FHR+IPGFMIQ Sbjct: 2 NPIVTIEMATGEKIKIELYPEIAPNTVRNFVSLVKKGFYDGLTFHRIIPGFMIQGGCPEG 61 Query: 141 XXXXXXXYSIAGEFTANGFTNNLQHTQGVLSMARSQDMNSGGSQFFIMAAAYPSLDGQYA 200 Y I GEFT N F NNL+H++GV+SMAR+ + +S GSQFFIM P LDGQYA Sbjct: 62 TGMGNPGYRIKGEFTRNQFPNNLKHSRGVISMARAMNFDSAGSQFFIMHENSPHLDGQYA 121 Query: 201 AFGKVTEGQDVVDAIVNLXXXXXXXXXXXXVMKKVTVDTL-GVTYPE 246 +FGKV EG DVVD I N+ VM KVTV+ G+ PE Sbjct: 122 SFGKVIEGMDVVDKIANVKTDYNDMPDEPQVMAKVTVENAEGIEEPE 168 >ref|NP_349373.1| Peptidyl-prolyl cis-transisomerase, cyclophilin family [Clostridium acetobutylicum] pir||F97240 peptidyl-prolyl cis-transisomerase, cyclophilin family [imported] - Clostridium acetobutylicum gb|AAK80713.1| Peptidyl-prolyl cis-transisomerase, cyclophilin family [Clostridium acetobutylicum] Length = 174 Score = 183 bits (464), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 92/171 (53%), Positives = 115/171 (67%) Query: 81 HPVVTIEMDNGGIIKAELYPEVAPNTVNNFISLIQKGFYDGTIFHRVIPGFMIQXXXXXX 140 +P+VTIEM+NG IK ELYP +APNTV+NFISLI FYDG IFHRVIPGFMIQ Sbjct: 3 NPIVTIEMENGNKIKIELYPHIAPNTVSNFISLINHNFYDGVIFHRVIPGFMIQGGDPDG 62 Query: 141 XXXXXXXYSIAGEFTANGFTNNLQHTQGVLSMARSQDMNSGGSQFFIMAAAYPSLDGQYA 200 Y+I GEF++NGF NNL+H +GV+SMAR+ +S GSQFFIMA P LDG YA Sbjct: 63 NGMGGPGYAIKGEFSSNGFQNNLKHERGVISMARTGFPDSAGSQFFIMAEDSPHLDGDYA 122 Query: 201 AFGKVTEGQDVVDAIVNLXXXXXXXXXXXXVMKKVTVDTLGVTYPEPEKVQ 251 AFG+VTEG + VD IV++ +K + ++T G YPE E ++ Sbjct: 123 AFGRVTEGIEEVDRIVSVKRDYSDKPLEDQRIKTMEIETFGENYPEVEIIE 173 >ref|NP_562483.1| probable peptidyl-prolyl cis-trans isomerase B [Clostridium perfringens] dbj|BAB81273.1| probable peptidyl-prolyl cis-trans isomerase B [Clostridium perfringens str. 13] Length = 210 Score = 174 bits (440), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 85/170 (50%), Positives = 110/170 (64%) Query: 82 PVVTIEMDNGGIIKAELYPEVAPNTVNNFISLIQKGFYDGTIFHRVIPGFMIQXXXXXXX 141 PV TIE+ N G I+AELYP APNTV+NFISL GFYDG HR++ GF++Q Sbjct: 41 PVATIEVKNFGTIEAELYPNKAPNTVDNFISLANSGFYDGLTIHRIVKGFVLQGGDPKGT 100 Query: 142 XXXXXXYSIAGEFTANGFTNNLQHTQGVLSMARSQDMNSGGSQFFIMAAAYPSLDGQYAA 201 Y I GEF++NG N+++H +G+LSMARSQ+ +S GSQFFI+ P L+GQYAA Sbjct: 101 GTGGPGYMIKGEFSSNGVENDIKHEEGILSMARSQNPDSAGSQFFIVTKEAPHLNGQYAA 160 Query: 202 FGKVTEGQDVVDAIVNLXXXXXXXXXXXXVMKKVTVDTLGVTYPEPEKVQ 251 FGKVT+G DVV I + V++ + VDT G+ Y EPEKV+ Sbjct: 161 FGKVTKGLDVVHEIEKVSVGANDKPVEDVVIESIKVDTKGIEYKEPEKVK 210 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.320 0.137 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 262,708,996 Number of extensions: 7946927 Number of successful extensions: 17428 Number of sequences better than 1.0e-05: 1254 Number of HSP's gapped: 15945 Number of HSP's successfully gapped: 1257 Length of query: 251 Length of database: 757,237,578 Length adjustment: 123 Effective length of query: 128 Effective length of database: 423,280,401 Effective search space: 54179891328 Effective search space used: 54179891328 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 124 (52.4 bits)