BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0391.0005.p
         (86 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_980352.1| sporulation kinase B [Bacillus cereus ATCC 1098...    67   1e-10
ref|NP_658044.1| HATPase_c, Histidine kinase-, DNA gyrase B-, ph...    67   1e-10
ref|NP_833726.1| Sporulation kinase B [Bacillus cereus ATCC 1457...    67   1e-10
ref|NP_977776.1| sporulation kinase B [Bacillus cereus ATCC 1098...    60   2e-08
ref|NP_843816.1| sporulation kinase B [Bacillus anthracis str. A...    60   2e-08

>ref|NP_980352.1| sporulation kinase B [Bacillus cereus ATCC 10987]
 gb|AAS42960.1| sporulation kinase B [Bacillus cereus ATCC 10987]
          Length = 424

 Score = 67.4 bits (163), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 30/50 (60%), Positives = 41/50 (82%)

Query: 1   MKMSELAHLGEPYYSNKKKGTGLGLMVTFRIIEAMNGSIQFQSRKGEGTE 50
           M   +LA LG+PYYS K+KGTGLGLMVTF I++A NG+++++S  G+GTE
Sbjct: 363 MTKEQLARLGQPYYSLKEKGTGLGLMVTFSILQAHNGTLEYKSESGKGTE 412


>ref|NP_658044.1| HATPase_c, Histidine kinase-, DNA gyrase B-, phytochrome-like
           ATPase [Bacillus anthracis A2012]
 ref|NP_846458.1| sporulation kinase B [Bacillus anthracis str. Ames]
 gb|AAP27944.1| sporulation kinase B [Bacillus anthracis str. Ames]
          Length = 424

 Score = 67.4 bits (163), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 30/50 (60%), Positives = 41/50 (82%)

Query: 1   MKMSELAHLGEPYYSNKKKGTGLGLMVTFRIIEAMNGSIQFQSRKGEGTE 50
           M   +LA LG+PYYS K+KGTGLGLMVTF I++A NG+++++S  G+GTE
Sbjct: 363 MTKEQLARLGQPYYSLKEKGTGLGLMVTFSILQAHNGTLEYKSESGKGTE 412


>ref|NP_833726.1| Sporulation kinase B [Bacillus cereus ATCC 14579]
 gb|AAP10927.1| Sporulation kinase B [Bacillus cereus ATCC 14579]
          Length = 424

 Score = 67.0 bits (162), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 30/50 (60%), Positives = 41/50 (82%)

Query: 1   MKMSELAHLGEPYYSNKKKGTGLGLMVTFRIIEAMNGSIQFQSRKGEGTE 50
           M   +LA LG+PYYS K+KGTGLGLMVTF I++A NG+++++S  G+GTE
Sbjct: 363 MTNEQLARLGQPYYSLKEKGTGLGLMVTFSILQAHNGTLEYKSESGKGTE 412


>ref|NP_977776.1| sporulation kinase B [Bacillus cereus ATCC 10987]
 gb|AAS40384.1| sporulation kinase B [Bacillus cereus ATCC 10987]
          Length = 402

 Score = 60.1 bits (144), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/49 (53%), Positives = 34/49 (69%)

Query: 1   MKMSELAHLGEPYYSNKKKGTGLGLMVTFRIIEAMNGSIQFQSRKGEGT 49
           M   ++  LG P+YS K+KGTGLG+MV F +++AMNG I   S KG GT
Sbjct: 342 MDQEQVKRLGSPFYSTKEKGTGLGMMVVFSVVQAMNGKIDIISEKGTGT 390


>ref|NP_843816.1| sporulation kinase B [Bacillus anthracis str. Ames]
 gb|AAP25302.1| sporulation kinase B [Bacillus anthracis str. Ames]
          Length = 402

 Score = 60.1 bits (144), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/49 (53%), Positives = 34/49 (69%)

Query: 1   MKMSELAHLGEPYYSNKKKGTGLGLMVTFRIIEAMNGSIQFQSRKGEGT 49
           M   ++  LG P+YS K+KGTGLG+MV F +++AMNG I   S KG GT
Sbjct: 342 MDQEQVKRLGSPFYSTKEKGTGLGMMVVFSVVQAMNGKIDIISEKGTGT 390


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.319    0.136    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 96,195,509
Number of extensions: 2450901
Number of successful extensions: 9424
Number of sequences better than 1.0e-05: 24
Number of HSP's gapped: 9547
Number of HSP's successfully gapped: 24
Length of query: 86
Length of database: 757,237,578
Length adjustment: 55
Effective length of query: 31
Effective length of database: 607,907,133
Effective search space: 18845121123
Effective search space used: 18845121123
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 120 (50.8 bits)