BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0389.0010.p (457 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|EAH90315.1| unknown [environmental sequence] 162 2e-38 ref|NP_881223.1| putative GntR-family transcriptional regulator ... 159 1e-37 ref|NP_948140.1| transcriptional regulator, GntR family with ami... 159 2e-37 ref|NP_888968.1| putative GntR-family transcriptional regulator ... 157 7e-37 ref|NP_488778.1| transcriptional regulator [Nostoc sp. PCC 7120]... 156 8e-37 >gb|EAH90315.1| unknown [environmental sequence] Length = 490 Score = 162 bits (409), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 95/217 (43%), Positives = 122/217 (56%), Gaps = 5/217 (2%) Query: 234 FRSRGMLMEHFPYAEWRSALKYAGGKSGGLLEGYCPPQGEEGLRRAIAAHLRVTRGIRAE 293 FR + HFP WR A+ A ++G L GY P GE LR +IA HL VTRG+R + Sbjct: 128 FRPGVPALTHFPADAWRHAIDRALRRAGRDLLGYGDPLGEPALRESIARHLAVTRGVRCD 187 Query: 294 AEHIVLFSGSMQGIVLLAQLLLEPGSPAVVEDPGFHGIRRAVEISGGELLLGRVDESGLV 353 E IV+ G+ I L AQLL PG VE+PG+ G R A++ + +++ VD GL Sbjct: 188 PEQIVITEGAQGAIALCAQLLTNPGDTVWVEEPGYRGARTAMQAADLDVVPMPVDAEGLR 247 Query: 354 PQ--DWAA---RLLFVTPSRQFPTGAVLPXXXXXXXXXXXXXXXXXIVEDDYDSEFRWGG 408 + DW A RL++ TPS QFPTGAVL IVEDDYDSEFR G Sbjct: 248 TEEDDWRARTPRLVYTTPSNQFPTGAVLSISRRLALIDAARRHRAWIVEDDYDSEFRHTG 307 Query: 409 RPIEPLKALDHEERVIYIGSFSNSMFSGLRLGYAVLP 445 PI + L + V+Y+GSFS +MF LR+G+ VLP Sbjct: 308 EPIGAMHGLAPDSPVVYLGSFSKTMFPALRIGFLVLP 344 >ref|NP_881223.1| putative GntR-family transcriptional regulator [Bordetella pertussis Tohama I] emb|CAE42875.1| putative GntR-family transcriptional regulator [Bordetella pertussis] Length = 510 Score = 159 bits (402), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 98/251 (39%), Positives = 130/251 (51%), Gaps = 5/251 (1%) Query: 209 LSSWGNRLMHRHVSIYEPADGAFVSFRSRGMLMEHFPYAEWRSALKYAGGKSGGLLEGYC 268 LS+WG R+ + P +F + FP W+ A ++A + L Y Sbjct: 104 LSAWGRRVANIGTPAPLPHPPVRYNFLYGALASRDFPSLAWKRAYQHALQRPPHSLS-YA 162 Query: 269 PPQGEEGLRRAIAAHLRVTRGIRAEAEHIVLFSGSMQGIVLLAQLLLEPGSPAVVEDPGF 328 PP+GE LRRA+ +LR RGI E I++ GS Q I L A+LLL+ G V E+PG+ Sbjct: 163 PPEGEPALRRALQGYLRRARGIACEPGQILIVQGSQQAIDLCARLLLDAGDDFVFENPGY 222 Query: 329 HGIRRAVEISGGELLLGRVDESGL----VPQDWAARLLFVTPSRQFPTGAVLPXXXXXXX 384 R +G LL VDE GL +P RL +VTPS QFP G VLP Sbjct: 223 LMARHCFAATGARLLPVDVDEHGLDTEQLPDTARVRLAYVTPSHQFPLGGVLPIGRRRQL 282 Query: 385 XXXXXXXXXXIVEDDYDSEFRWGGRPIEPLKALDHEERVIYIGSFSNSMFSGLRLGYAVL 444 IVEDDYD EFR+G RPI+ L+++D + RVIY+G+ S ++ LRLGY VL Sbjct: 283 LQWARRHDAWIVEDDYDGEFRYGQRPIDALQSIDTDGRVIYVGTVSKALSPRLRLGYMVL 342 Query: 445 PPXXXXTRRQS 455 P RQ+ Sbjct: 343 PRHLVEVFRQA 353 >ref|NP_948140.1| transcriptional regulator, GntR family with aminotransferase domain [Rhodopseudomonas palustris CGA009] emb|CAE28239.1| transcriptional regulator, GntR family with aminotransferase domain [Rhodopseudomonas palustris CGA009] Length = 483 Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 83/208 (39%), Positives = 118/208 (56%), Gaps = 5/208 (2%) Query: 244 FPYAEWRSALKYAGGKSGGLLEGYCPPQGEEGLRRAIAAHLRVTRGIRAEAEHIVLFSGS 303 FP W + + G +C PQG E LRRAIA ++ + RG RA A+ +++ + S Sbjct: 132 FPLPLWERLERQVRKELGAQTLLHCDPQGTEPLRRAIADYVNLERGARASADRVLVLTSS 191 Query: 304 MQGIVLLAQLLLEPGSPAVVEDPGFHGIRRAVEISGGELLLGRVDESGLV-----PQDWA 358 Q + L A +LL+PG +EDP ++G R+A + +G E + VD GLV Q Sbjct: 192 QQALSLCANMLLDPGDRVFIEDPAYYGARKAFDAAGLECVPIPVDRQGLVVDQITAQPRR 251 Query: 359 ARLLFVTPSRQFPTGAVLPXXXXXXXXXXXXXXXXXIVEDDYDSEFRWGGRPIEPLKALD 418 A+ +F+TPS QFPTGA L I+EDDYDSEF + G+P ++ LD Sbjct: 252 AKAVFLTPSHQFPTGATLALDRRLALIEWAARHQTWIIEDDYDSEFHYAGKPTACVQGLD 311 Query: 419 HEERVIYIGSFSNSMFSGLRLGYAVLPP 446 +R +YIG+F+ S+F GLR+GY VLPP Sbjct: 312 PHDRTVYIGTFTKSLFPGLRIGYVVLPP 339 >ref|NP_888968.1| putative GntR-family transcriptional regulator [Bordetella bronchiseptica RB50] emb|CAE32922.1| putative GntR-family transcriptional regulator [Bordetella bronchiseptica] Length = 493 Score = 157 bits (396), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 93/225 (41%), Positives = 129/225 (57%), Gaps = 5/225 (2%) Query: 226 PADGAFVSFRSRGMLMEHFPYAEWRSALKYAGGKSGGLLEGYCPPQGEEGLRRAIAAHLR 285 P ++ R + HFP + WR+AL+ A ++ L GY P GE LR+AIAA+L Sbjct: 127 PRTDTYLPLRPGTPALNHFPASAWRNALERALREAPAALLGYGEPAGEPRLRQAIAAYLA 186 Query: 286 VTRGIRAEAEHIVLFSGSMQGIVLLAQLLLEPGSPAVVEDPGFHGIRRAVEISGGELLLG 345 RG+R EA IV+ G+ +G+ L +LL G A VEDPG+ G + A+ ++ Sbjct: 187 AARGVRCEARQIVITEGAQEGLALCVRLLGNAGDTAWVEDPGYRGAKTALRCGDMRVVPV 246 Query: 346 RVDESGLV--PQDW---AARLLFVTPSRQFPTGAVLPXXXXXXXXXXXXXXXXXIVEDDY 400 RVD +GL+ PQ W RL++VTPS Q+PTGAVLP I+EDDY Sbjct: 247 RVDAAGLLAPPQAWRDAPPRLIYVTPSHQYPTGAVLPVTRRLALIEQARRAGAWIIEDDY 306 Query: 401 DSEFRWGGRPIEPLKALDHEERVIYIGSFSNSMFSGLRLGYAVLP 445 DSEFR G PI ++ L + V+Y+G++S +MF LRLG+ VLP Sbjct: 307 DSEFRHQGEPIAAMQGLVPDAPVLYVGTYSKTMFPSLRLGFVVLP 351 >ref|NP_488778.1| transcriptional regulator [Nostoc sp. PCC 7120] pir||AB2398 transcription regulator alr4738 [imported] - Nostoc sp. (strain PCC 7120) dbj|BAB76437.1| transcriptional regulator [Nostoc sp. PCC 7120] Length = 490 Score = 156 bits (395), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 90/245 (36%), Positives = 128/245 (52%), Gaps = 7/245 (2%) Query: 207 IPLSSWGNRLMHRHVSIYEPADGAFVSFRSRGMLMEHFPYAEWRSALKYAGGKSGGLLEG 266 +PLS++G L + + P +SF + FP WR + +L+ Sbjct: 103 VPLSAYGKSLSDKAF-LRIPEQAVEISFSYGRPAFDQFPIDLWRKLISRHCHSKAEVLDY 161 Query: 267 YCPPQGEEGLRRAIAAHLRVTRGIRAEAEHIVLFSGSMQGIVLLAQLLLEPGSPAVVEDP 326 G + LR AIAA+L +R + +AE I++ GS QG+ L+ ++L++P VE+P Sbjct: 162 TDNSLGYQPLREAIAAYLSRSRAVNCQAEQIIIVGGSQQGLDLITRILIDPNDGIAVEEP 221 Query: 327 GFHGIRRAVEISGGELLLGRVDESGLVPQDWAA------RLLFVTPSRQFPTGAVLPXXX 380 G+ G RRA G L VD+SGL+ +L++VTPS QFPTGAVL Sbjct: 222 GYLGARRAFLAQGASLFPVPVDQSGLIVSKLTTGIIPKLKLIYVTPSHQFPTGAVLSLPR 281 Query: 381 XXXXXXXXXXXXXXIVEDDYDSEFRWGGRPIEPLKALDHEERVIYIGSFSNSMFSGLRLG 440 I+EDDYDSE+R+G RPI L+ LD V+Y+G+FS +F LRLG Sbjct: 282 RLELLAWAHKTGVMIIEDDYDSEYRYGERPIPALQGLDQGNSVVYVGTFSKVLFPALRLG 341 Query: 441 YAVLP 445 Y VLP Sbjct: 342 YLVLP 346 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.136 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 627,089,250 Number of extensions: 25101505 Number of successful extensions: 62589 Number of sequences better than 1.0e-05: 400 Number of HSP's gapped: 62219 Number of HSP's successfully gapped: 400 Length of query: 457 Length of database: 757,237,578 Length adjustment: 129 Effective length of query: 328 Effective length of database: 406,989,807 Effective search space: 133492656696 Effective search space used: 133492656696 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)